Contig 004412:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF014C11Sequence479005310 (4)ref|XP_006366893.1|2e-36PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X1 [So800004412 (3)ref|XP_006366894.1|4e-124PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X2 [So
JMSF050J15Sequence624005310 (4)ref|XP_006366893.1|5e-67PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X1 [So783004412 (3)ref|XP_006366894.1|6e-114PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X2 [So
JMSF050O23Sequence653005310 (4)ref|XP_006366893.1|3e-78PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X1 [So648004412 (3)ref|XP_006366894.1|3e-94PREDICTED: homogentisate phytyltransferase 2, chloroplastic-like isoform X2 [So

Alignment

This contig is upended


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rJMSF014C11+                                                 TCTGCATGGATCTTGGTTATA
                      ____________________________________________________________
consensus                                                    TCTGCATGGATCTTGGTTATA
 
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rJMSF014C11+          NTTTTTGCTGNGGCAGGACTGTTTATAGTTGGGATGAACTTTGGTTCGTTCATTTGTTCT
                      ____________________________________________________________
consensus             NTTTTTGCTGNGGCAGGACTGTTTATAGTTGGGATGAACTTTGGTTCGTTCATTTGTTCT
 
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rJMSF014C11+          CTTTATGCTCTTGGTCTCTTCCTGGGCACCATCTACTCTGTACCCCCGTTTCGCTTGAAG
                      ____________________________________________________________
consensus             CTTTATGCTCTTGGTCTCTTCCTGGGCACCATCTACTCTGTACCCCCGTTTCGCTTGAAG
 
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rJMSF014C11+          AGATTTCCAATTTTAGCATTTCTAATCATCGCCACGGTACGGGGTTTTCTCCTTAATTAT
                      ____________________________________________________________
consensus             AGATTTCCAATTTTAGCATTTCTAATCATCGCCACGGTACGGGGTTTTCTCCTTAATTAT
 
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rJMSF014C11+          GGCGTCTATTATGCCACAAGAGCAGCTCTGGGGTTAAGCTTTGAATGGAGCTCACCCGTG
rJMSF050O23+                                                          AGCTCACCCGTG
rJMSF050J15+                                                          AGCTCACCCGTG
                      ____________________________________________________________
consensus             GGCGTCTATTATGCCACAAGAGCAGCTCTGGGGTTAAGCTTTGAATGGAGCTCACCCGTG
 
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rJMSF014C11+          GCTTTCATTACAACTTTTGTCACGTTATTTGCTTTGGTTATTGCCATAACTAAGGATCTG
rJMSF050O23+          GCTTTCATTACAACTTTTGTCACGTTATTTGCTTTGGTTATTGCCATAACTAAGGATCTG
rJMSF050J15+          GCTTTCATTACAACTTTTGTCACGTTATTTGCTTTGGTTATTGCCATAACTAAGGATCTG
                      ____________________________________________________________
consensus             GCTTTCATTACAACTTTTGTCACGTTATTTGCTTTGGTTATTGCCATAACTAAGGATCTG
 
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rJMSF014C11+          CCCGATGTAGAAGGTGACCGAAAGTTTCAAATTTCTACTTTCGCTACTAAGCTTGGCGTG
rJMSF050O23+          CCCGATGTAGAAGGTGACCGAAAGTTTCAAATTTCTACTTTCGCTACTAAGCTTGGCGTG
rJMSF050J15+          CCCGATGTAGAAGGTGACCGAAAGTTTCAAATTTCTACTTTCGCTACTAAGCTTGGCGTG
                      ____________________________________________________________
consensus             CCCGATGTAGAAGGTGACCGAAAGTTTCAAATTTCTACTTTCGCTACTAAGCTTGGCGTG
 
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rJMSF014C11+          AGGAACATAGCATTCATGGGCTCGGGGCTCTTGTTGGTAAATTACATCGGTGCTGTATTG
rJMSF050O23+          AGGAACATAGCATTCATGGGCTCGGGGCTCTTGTTGGTAAATTACATCGGTGCTGTATTG
rJMSF050J15+          AGGAACATAGCATTCATGGGCTCGGGGCTCTTGTTGGTAAATTACATCGGTGCTGTATTG
                      ____________________________________________________________
consensus             AGGAACATAGCATTCATGGGCTCGGGGCTCTTGTTGGTAAATTACATCGGTGCTGTATTG
 
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rJMSF014C11+          GCTGCAATTTACATGCCTCATGCTTTCAGGAGCCGGTTGATGATACCATTTCATGCAGTC
rJMSF050O23+          GCTGCAATTTACATGCCTCATGCTTTCAGGAGCCGGTTGATGATACCATTTCATGCAGTC
rJMSF050J15+          GCTGCAATTTACATGCCTCATGCTTTCAGGAGCCGGTTGATGATACCATTTCATGCAGTC
                      ____________________________________________________________
consensus             GCTGCAATTTACATGCCTCATGCTTTCAGGAGCCGGTTGATGATACCATTTCATGCAGTC
 
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rJMSF014C11+          TTGGCAGTATGCTTAGTTTTCCAGACCTGGTTACTGGAAAAAGCGAACTATACTAAGGAA
rJMSF050O23+          TTGGCAGTATGCTTAGTTTTCCAGACCTGGTTACTGGAAAAAGCGAACTATACTAAGGAA
rJMSF050J15+          TTGGCAGTATGCTTAGTTTTCCAGACCTGGTTACTGGAAAAAGCGAACTATACTAAGGAA
                      ____________________________________________________________
consensus             TTGGCAGTATGCTTAGTTTTCCAGACCTGGTTACTGGAAAAAGCGAACTATACTAAGGAA
 
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rJMSF014C11+          GCAATTTCAGCATTCTACCGGTTTATATGGAATCTCTTCTACGCAGAGTATTTGCTATTC
rJMSF050O23+          GCAATTTCAGCATTCTACCGGTTTATATGGAATCTCTTCTACGCAGAGTATTTGCTATTC
rJMSF050J15+          GCAATTTCAGCATTCTACCGGTTTATATGGAATCTCTTCTACGCAGAGTATTTGCTATTC
                      ____________________________________________________________
consensus             GCAATTTCAGCATTCTACCGGTTTATATGGAATCTCTTCTACGCAGAGTATTTGCTATTC
 
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rJMSF014C11+          CCTTTCATCTAACGTGTAAGTTTCATTAGTGTCGGGAAATTTTTTCGAGGGCCATGGTTT
rJMSF050O23+          CCTTTCATCTAACGTGTAAGTTTCATTAGTGTCGGGAAATTTTTTCGAGGGCCATGGTTT
rJMSF050J15+          CCTTTCATCTAACGTGTAAGTTTCATTAGTGTCGGGAAATTTTTTCGAGGGCCATGGTTT
                      ____________________________________________________________
consensus             CCTTTCATCTAACGTGTAAGTTTCATTAGTGTCGGGAAATTTTTTCGAGGGCCATGGTTT
 
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rJMSF014C11+          AGCAGAGAAAGAGACAGTGTAGTATCTGTTTTATATATTTTCTCAATTAGTTGTAGCTCA
rJMSF050O23+          AGCAGAGAAAGAGACAGTGTAGTATCTGTTTTATATATTTTCTCAATTAGTTGTAGCTCA
rJMSF050J15+          AGCAGAGAAAGAGACAGTGTAGTATCTGTTTTATATATTTTCTCAATTAGTTGTAGCTCA
                      ____________________________________________________________
consensus             AGCAGAGAAAGAGACAGTGTAGTATCTGTTTTATATATTTTCTCAATTAGTTGTAGCTCA
 
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rJMSF014C11+          AATAGTCAATACTTCACCACAGAGAAAGAGAC                            
rJMSF050O23+          AATAGTCAATACTTCACCACAGAGAAAGAGAC                            
rJMSF050J15+          AATAGTCAATACTTCACCACAGAGAAAGAGACAGTGTAGTATCTGTGCCAATGTGTATAC
                      ____________________________________________________________
consensus             AATAGTCAATACTTCACCACAGAGAAAGAGACAGTGTAGTATCTGTGCCAATGTGTATAC