Contig 004410:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF047J12Sequence623002470 (2)gb|EYU41362.1|8e-90hypothetical protein MIMGU_mgv1a0060842mg, partial [Erythranthe guttata]555004410 (2)gb|EYU41363.1|8e-75hypothetical protein MIMGU_mgv1a0060841mg, partial [Erythranthe guttata]
JMSF050H19Sequence662002470 (2)gb|EYU41362.1|2e-96hypothetical protein MIMGU_mgv1a0060842mg, partial [Erythranthe guttata]747004410 (2)emb|CDP02648.1|7e-103unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF050H19+                                           AAGAGGTTTGTAGGAGAATTGACAGTT
                      ____________________________________________________________
consensus                                              AAGAGGTTTGTAGGAGAATTGACAGTT
 
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rJMSF050H19+          TACCTGATGGCACGAATATCCTGCAGCGAATATTTGAAGGAGTTAGTGTCTATTATAATT
                      ____________________________________________________________
consensus             TACCTGATGGCACGAATATCCTGCAGCGAATATTTGAAGGAGTTAGTGTCTATTATAATT
 
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rJMFF047J12+                                                                GCTGGG
rJMSF050H19+          ACACTGGAACAGTTGACTGTTTTGATTTGGATGATGATCCTCATGGTATGAGTGGCTGGG
                      ____________________________________________________________
consensus             ACACTGGAACAGTTGACTGTTTTGATTTGGATGATGATCCTCATGGTATGAGTGGCTGGG
 
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rJMFF047J12+          ACTGGCAGGCATGCACTGAAATGGTTATGCCAGTGTCAAGTAACAGCAACACGAGTATGT
rJMSF050H19+          ACTGGCAGGCATGCACTGAAATGGTTATGCCAGTGTCAAGTAACAGCAACACGAGTATGT
                      ____________________________________________________________
consensus             ACTGGCAGGCATGCACTGAAATGGTTATGCCAGTGTCAAGTAACAGCAACACGAGTATGT
 
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rJMFF047J12+          TTGCAGCATTTGATTATGAATACAGCGCTGATGAAGAGTATTGCTATAATAGCTACCATG
rJMSF050H19+          TTGCAGCATTTGATTATGAATACAGCGCTGATGAAGAGTATTGCTATAATAGCTACCATG
                      ____________________________________________________________
consensus             TTGCAGCATTTGATTATGAATACAGCGCTGATGAAGAGTATTGCTATAATAGCTACCATG
 
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rJMFF047J12+          TTATTCCAAGGCCTACATGGATAACAACTGAATTTGGTGGACATGACATCAAGACTGCTC
rJMSF050H19+          TTATTCCAAGGCCTACATGGATAACAACTGAATTTGGTGGACATGACATCAAGACTGCTC
                      ____________________________________________________________
consensus             TTATTCCAAGGCCTACATGGATAACAACTGAATTTGGTGGACATGACATCAAGACTGCTC
 
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rJMFF047J12+          TTGGAACTTTTGGGAGCAACATTATATTCTCAAATGGTCTCTTAGATCCATGGAGTGGTG
rJMSF050H19+          TTGGAACTTTTGGGAGCAACATTATATTCTCAAATGGTCTCTTAGATCCATGGAGTGGTG
                      ____________________________________________________________
consensus             TTGGAACTTTTGGGAGCAACATTATATTCTCAAATGGTCTCTTAGATCCATGGAGTGGTG
 
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rJMFF047J12+          GCAGTGTTCTTCAGAACATATCAGAAACGATTGTTGCTCTTGTTACTGAAAAAGGTGCCC
rJMSF050H19+          GCAGTGTTCTTCAGAACATATCAGAAACGATTGTTGCTCTTGTTACTGAAAAAGGTGCCC
                      ____________________________________________________________
consensus             GCAGTGTTCTTCAGAACATATCAGAAACGATTGTTGCTCTTGTTACTGAAAAAGGTGCCC
 
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rJMFF047J12+          ATCACTTGGATCTGCGTGCTGCGACGCCAGAGGATCCGGATTGGCTGGTGGAGCAGAGGG
rJMSF050H19+          ATCACTTGGATCTGCGTGCTGCGACGCCAGAGGATCCGGATTGGCTGGTGGAGCAGAGGG
                      ____________________________________________________________
consensus             ATCACTTGGATCTGCGTGCTGCGACGCCAGAGGATCCGGATTGGCTGGTGGAGCAGAGGG
 
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rJMFF047J12+          AATCTGAAGTAAAGCTGATAGAAAGCTGGTTGAACAGTTACTTCGAGTCAAAAAGGAAAA
rJMSF050H19+          AATCTGAAGTAAAGCTGATAGAAAGCTGGTTGAACAGTTACTTCGAGTCAAAAAGGAAAA
                      ____________________________________________________________
consensus             AATCTGAAGTAAAGCTGATAGAAAGCTGGTTGAACAGTTACTTCGAGTCAAAAAGGAAAA
 
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rJMFF047J12+          GTTTCTCCATTTAGAAGGTGAGTTCTTGGCAGCGAAACCTTGGTTGTTTTAACTCCCTGT
rJMSF050H19+          GTTTCTCCATTTAGAAGGTGAGTTCTTGGCAGCGAAACCTTGGTTGTTTTAACTCCCTGT
                      ____________________________________________________________
consensus             GTTTCTCCATTTAGAAGGTGAGTTCTTGGCAGCGAAACCTTGGTTGTTTTAACTCCCTGT
 
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rJMFF047J12+          TATTAAGAAACAAGTAGCATGTCTAGTATGGTAAACAAATCCCACGTTTACAAAAACTTA
rJMSF050H19+          TATTAAGAAACAAGTAGCATGTCTAGTATGGTAAACAAATCCCACGTTTACAAAAACTTA
                      ____________________________________________________________
consensus             TATTAAGAAACAAGTAGCATGTCTAGTATGGTAAACAAATCCCACGTTTACAAAAACTTA
 
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rJMFF047J12+          TGTTACAG                                                    
rJMSF050H19+          TGTTACAGTATTTCCTCGTTATTTTAGTCTTTGTTCAAAAACCATGTTCACCAAAACCTT
                      ____________________________________________________________
consensus             TGTTACAGTATTTCCTCGTTATTTTAGTCTTTGTTCAAAAACCATGTTCACCAAAACCTT