Contig 004409:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF041H01Sequence423002425 (8)ref|XP_006345416.1|2e-41PREDICTED: cinnamoyl-CoA reductase 1-like [Solanum tuberosum]736004409 (3)ref|XP_004299809.1|1e-54PREDICTED: uncharacterized protein LOC101295420 isoform X1 [Fragaria vesca subs
JMSF050G18Sequence709004409 (3)ref|XP_009790552.1|6e-104PREDICTED: uncharacterized protein LOC104237992 isoform X1 [Nicotiana sylvestri763004409 (3)ref|XP_009790559.1|3e-77PREDICTED: uncharacterized protein LOC104237992 isoform X2 [Nicotiana sylvestri

Alignment

This contig is upended


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JMSF050G18-                     GAATCCTGCACTATTCCATCTCACCCACTGCTCCTCGCTCTTTCCGCGCG
                      ____________________________________________________________
consensus                       GAATCCTGCACTATTCCATCTCACCCACTGCTCCTCGCTCTTTCCGCGCG
 
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JMSF050G18-           GCAAAAATTTGCACACTTTCAGTTTGCTAGGAAACGACGTCGCTTCATTACTTTTGCATC
                      ____________________________________________________________
consensus             GCAAAAATTTGCACACTTTCAGTTTGCTAGGAAACGACGTCGCTTCATTACTTTTGCATC
 
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JMSF050G18-           CACCTTGGAGCTCCCACTTCTTCCCTTTCCTATAGACCAGACACTTATCCCTTCAGAGAC
                      ____________________________________________________________
consensus             CACCTTGGAGCTCCCACTTCTTCCCTTTCCTATAGACCAGACACTTATCCCTTCAGAGAC
 
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JMSF050G18-           CAAGTCACTTCACTTGTATGAAGCCAGATACCTAGCTCTGCTAGATGAGTCTCTATTTAG
                      ____________________________________________________________
consensus             CAAGTCACTTCACTTGTATGAAGCCAGATACCTAGCTCTGCTAGATGAGTCTCTATTTAG
 
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JMSF050G18-           GAAAGAGAAGCTATTTGTACACTTTGTGTTGGATCCTATTGCGATTAATGATACATCTGG
                      ____________________________________________________________
consensus             GAAAGAGAAGCTATTTGTACACTTTGTGTTGGATCCTATTGCGATTAATGATACATCTGG
 
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JMSF050G18-           AGAAGCATCATTTGCAGCCAGATATTGTTGCTTAGTTGTTATAGAGAAAGTTGAGCGCTT
rJMSF041H01+                                                TTATAGAGAAAGTTGAGCGCTT
rJMSF050G18+                       GCAGCCAGATATTGTTGCTTAGTTGTTATAGAGAAAGTTGAGCGCTT
                      ____________________________________________________________
consensus             AGAAGCATCATTTGCAGCCAGATATTGTTGCTTAGTTGTTATAGAGAAAGTTGAGCGCTT
 
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JMSF050G18-           AGATGTTGGCGCGTTTGTCTCTATAAGAGGCATAGGCCGTGTCAAGATTGTGCATTTTGT
rJMSF041H01+          NGATGTTGNCGCGTTNGTCTCTATAAGAGGCATAGNCCGTGTCAAGATTGTGCATTTNGT
rJMSF050G18+          AGATGTTGGCGCGTTTGTCTCTATAAGAGGCATAGGCCGTGTCAAGATTGTGCATTTTGT
                      ____________________________________________________________
consensus             AGATGTTGGCGCGTTTGTCTCTATAAGAGGCATAGGCCGTGTCAAGATTGTGCATTTTGT
 
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JMSF050G18-           GCAGGCAGAACCATACTTGAGGGGCATGGTCATACCATTTCAAGATAACATTCCACTCAC
rJMSF041H01+          GCAGGCAGAACCATACTNGAGGGGCATGGTCATACCATTTCANGATAACATTCCACTCNC
rJMSF050G18+          GCAGGCAGAACCATACTTGAGGGGCATGGTCATACCATTTCAAGATAACATTCCACTCAC
                      ____________________________________________________________
consensus             GCAGGCAGAACCATACTTGAGGGGCATGGTCATACCATTTCAAGATAACATTCCACTCAC
 
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JMSF050G18-           GGTTACAGATATAAGTTCCAAAGTTTCAGAGTTGAAGGAATCCATTTGCAGTTTGAATAG
rJMSF041H01+          GGTTACAGANATAAGTTCCAAAGTTTCAGAGTTGAAGGAATCCATTTGCAGTTTGAATAG
rJMSF050G18+          GGTTACAGATATAAGTTCCAAAGTTTCAGAGTTGAAGGAATCCATTTGCAGTTTGAATAG
                      ____________________________________________________________
consensus             GGTTACAGATATAAGTTCCAAAGTTTCAGAGTTGAAGGAATCCATTTGCAGTTTGAATAG
 
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JMSF050G18-           TTTAGAAATAAAGCTGAAGGCCCCTAAAGAAGAATTGTTGCAAACAATGACTGCCAACTC
rJMSF041H01+          TTTNGAAATAAAGNTGAAGGCCCCTAAAGAAGAATTGTTGCAAACAANGACTGCCAACTC
rJMSF050G18+          TTTAGAAATAAAGCTGAAGGCCCCTAAAGAAGAATTGTTGCAAACAATGACTGCCAACTC
                      ____________________________________________________________
consensus             TTTAGAAATAAAGCTGAAGGCCCCTAAAGAAGAATTGTTGCAAACAATGACTGCCAACTC
 
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JMSF050G18-           TATAGGGTGGGTGAAGAAGGCATCTTTACTCGATTGTGACAGCAATTTCATTCCATCCAT
rJMSF041H01+          TATAGGGTGGGTGAAGAAGGCATCTTTACTNGATTGNGACAGCAATTTCATTCCATCCAT
rJMSF050G18+          TATAGGGTGGGTGAAGAAGGCATCTTTACTCGATTGTGACAGCAATTTCATTCCATCCAT
                      ____________________________________________________________
consensus             TATAGGGTGGGTGAAGAAGGCATCTTTACTCGATTGTGACAGCAATTTCATTCCATCCAT
 
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JMSF050G18-           GGCTGAGCTTGTGTCCTTTGCAGCACTCCNACCTGNTTCAGGAGCAACCCGATCCGATG 
rJMSF041H01+          GGCTGAGCTTGTGTCCTTTGCAGCACTCCAACCTGTTTCAGGAGCAACCCGATCCGATGT
rJMSF050G18+          GGCTGAGCTTGTGTCCTTTGCAGCACTCCAACCTGTTTCAGGAGCAACCCGATCCGATGT
                      ____________________________________________________________
consensus             GGCTGAGCTTGTGTCCTTTGCAGCACTCCAACCTGTTTCAGGAGCAACCCGATCCGATGT
 
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rJMSF041H01+          GGTGAAATTGCAGAAGGAGAAGCTAAGAGCAATGCACATGAAAGACACAATGGAGAGGCT
rJMSF050G18+          GGTGAAATTGCAGAAGGAGAAGCTAAGAGCAATGCACATGAAAGACACAATGGAGAGGCT
                      ____________________________________________________________
consensus             GGTGAAATTGCAGAAGGAGAAGCTAAGAGCAATGCACATGAAAGACACAATGGAGAGGCT
 
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rJMSF041H01+          AGACTTGTCGTCCNGATACGTGAGAGATAATATTTCCCTGGTCGCTGCAAANCTCGCGNT
rJMSF050G18+          AGACTTGTCGTCCAGATACGTGAGAGATAATATTTCCCTGGTCGCTGCAAAACTCGCGAT
                      ____________________________________________________________
consensus             AGACTTGTCGTCCAGATACGTGAGAGATAATATTTCCCTGGTCGCTGCAAAACTCGCGAT
 
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rJMSF041H01+          TCAATCTTTAGATGCCCCCTAGCCCCCCCTCTTCATGTGTGGATTCAATGCCTGCCTGCA
rJMSF050G18+          TCAATCTTTAGATGCCCCCTAGCCCCCCCTCTTCATGTGTGGATTCAATGCCTGCCTGCA
                      ____________________________________________________________
consensus             TCAATCTTTAGATGCCCCCTAGCCCCCCCTCTTCATGTGTGGATTCAATGCCTGCCTGCA
 
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rJMSF041H01+          AAAATCACCCACCAATNTCAGCTACACTATTTGACGAAAGAGAGAAATGTTGCAACGCAA
rJMSF050G18+          AAAATCACCCACCAATCTCAGCTACACTATTTGA-GAAAGAGAGAAATGTTGCAA-GCAA
                      ____________________________________________________________
consensus             AAAATCACCCACCAATCTCAGCTACACTATTTGACGAAAGAGAGAAATGTTGCAACGCAA
 
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rJMSF041H01+          GATTGGAAGTTGTTAAGGAAAGAACATTTGATTATTTGTTGAACATTATTTATAATAGTT
rJMSF050G18+          GATTGGAA-TTGTTAAGGAAAGAACATTTGATTATTTGTTGAACATTATTTATAATA-TT
                      ____________________________________________________________
consensus             GATTGGAAGTTGTTAAGGAAAGAACATTTGATTATTTGTTGAACATTATTTATAATAGTT
 
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rJMSF041H01+          GNTTACATTTTTCCACAAATGTCCAAGTTGTAATAANTGATAAAGTNTGCATAT      
rJMSF050G18+          GTTTACATTTTTCCACAAATGTACAAGTTGTAATAAGTGATAAAGTATGCATATCTGCAT
                      ____________________________________________________________
consensus             GTTTACATTTTTCCACAAATGTCCAAGTTGTAATAAGTGATAAAGTATGCATATCTGCAT