Contig 004407:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF039C12+                      GTTGTGTGATAAAAGGTGACGAAACCCACCTTAAAAACTCGAGCATTT
                      ____________________________________________________________
consensus                         GTTGTGTGATAAAAGGTGACGAAACCCACCTTAAAAACTCGAGCATTT
 
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rJMSF039C12+          CAAGAGGCTTGTGTTTTTTCGGTGGTTGAAGAACCTGCTGAGCATCTTGCTCAGTGGAGC
                      ____________________________________________________________
consensus             CAAGAGGCTTGTGTTTTTTCGGTGGTTGAAGAACCTGCTGAGCATCTTGCTCAGTGGAGC
 
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rJMSF039C12+          TACTCTGTTGCCTTCTCTGAGCTGTCTTTTGTACCTGCTGTTCGGCTACGCAGTTTTTGC
                      ____________________________________________________________
consensus             TACTCTGTTGCCTTCTCTGAGCTGTCTTTTGTACCTGCTGTTCGGCTACGCAGTTTTTGC
 
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rJMSF039C12+          AAGTCCACAAAGGTTGAGAGGTTCCGTCGAGAAATTAGGCAATTCATTCGTCAGGTTGAG
                      ____________________________________________________________
consensus             AAGTCCACAAAGGTTGAGAGGTTCCGTCGAGAAATTAGGCAATTCATTCGTCAGGTTGAG
 
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rJMSF039C12+          GCAAATTCCGAATTTACAAATAAGAAGCGTATGACTGTTACATTTCTACCCAATGATTCA
rJMSF050C04+               TTCCGAATTTACAAATAAGAAGCGTATGACTGTTACATTTCTACCCAATGATTCA
                      ____________________________________________________________
consensus             GCAAATTCCGAATTTACAAATAAGAAGCGTATGACTGTTACATTTCTACCCAATGATTCA
 
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rJMSF039C12+          GCTGCATCATCTTTTCTTGAGGATGAAAAAAAGGCAGGCATTAGCCCTTTGTCAAAATAT
rJMSF050C04+          GCTGCATCATCTTTTCTTGAGGATGAAAAAAAGGCAGGCATTAGCCCTTTGTCAAAATAT
                      ____________________________________________________________
consensus             GCTGCATCATCTTTTCTTGAGGATGAAAAAAAGGCAGGCATTAGCCCTTTGTCAAAATAT
 
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rJMSF039C12+          GTTGGCACTCTTCGCCAGAGGGCACAACAAAGAAGCGAATCTTTAATTGAATCGAGTGTT
rJMSF037K03+                                                         TGAATCGAGTGTT
rJMSF050C04+          GTTGGCACTCTTCGCCAGAGGGCACAACAAAGAAGCGAATCTTTAATTGAATCGAGTGTT
                      ____________________________________________________________
consensus             GTTGGCACTCTTCGCCAGAGGGCACAACAAAGAAGCGAATCTTTAATTGAATCGAGTGTT
 
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rJMSF039C12+          ATTGTTGGTGAACGTTCATCACTATTTGGAAGTAAGGTGATGGAGGACGTT--GACGATG
rJMSF037K03+          ATTGNTGGTGAACGTTCATCACTATTNGGAAGTAAGGTGATGGAGGACGTTCGACCGATG
rJMSF050C04+          ATTGTTGGTGAACGTTCATCACTATTTGGAAGTAAGGTGATGGAGGACGTT--GACGATG
                      ____________________________________________________________
consensus             ATTGTTGGTGAACGTTCATCACTATTTGGAAGTAAGGTGATGGAGGACGTT--GACGATG
 
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rJMSF039C12+          ATGATGATAGGGAAGACAAAGGTGATGCTATCTTCAATTCGTCTTGGCTACCAGGAGGCA
rJMSF037K03+          ATGATGATAGGGAAGACAAAGGTGATGCTATCTTCAATTCGTCCNGGNTACCAGGAGGCA
rJMSF050C04+          ATGATGATAGGGAAGACAAAGGTGATGCTATCTTCAATTCGTCTTGGCTACCAGGAGGCA
                      ____________________________________________________________
consensus             ATGATGATAGGGAAGACAAAGGTGATGCTATCTTCAATTCGTCTTGGCTACCAGGAGGCA
 
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rJMSF039C12+          ATTCCAAGACAAAGCACTCGAAAGAGAAGAAGACAAAGAAAAGAAAGAGGTCAAAGGATG
rJMSF037K03+          ATTCCANGACANAGCACTCGNAAGATAAGAAGNCAAAGANAAGAAAGAGGTCAAAGGATG
rJMSF050C04+          ATTCCAAGACAAAGCACTCGAAAGAGAAGAAGACAAAGAAAAGAAAGAGGTCAAAGGATG
                      ____________________________________________________________
consensus             ATTCCAAGACAAAGCACTCGAAAGAGAAGAAGACAAAGAAAAGAAAGAGGTCAAAGGATG
 
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rJMSF039C12+          GCGGTGTTTCTGATGAAGACATCGTGGAGGATTTGGTGCTTAGCTCTGATGAAGAAGGTT
rJMSF037K03+          GCGGTGTTTNTGATGAAGACATCGTGGAGGATTTGGTNNTNAGCTNNGATGANGAAGGTT
rJMSF050C04+          GCGGTGTTTCTGATGAAGACATCGTGGAGGATTTGGTGCTTAGCTCTGATGAAGAAGGTT
                      ____________________________________________________________
consensus             GCGGTGTTTCTGATGAAGACATCGTGGAGGATTTGGTGCTTAGCTCTGATGAAGAAGGTT
 
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rJMSF039C12+          CCATGAGCGACACACCTACTGAAGACATCAGCAAGAAGCCGAAATCAACTGTAGAGCCAT
rJMSF037K03+          CCATGAGCGACACACCTTCTGAAGACATCAGCAAGAAGCCGAAATCAACTGTAGAGCCAT
rJMSF050C04+          CCATGAGCGACACACCTACTGAAGACATCAGCAAGAAGCCGAAATCAACTGTAGAGCCAT
                      ____________________________________________________________
consensus             CCATGAGCGACACACCTACTGAAGACATCAGCAAGAAGCCGAAATCAACTGTAGAGCCAT
 
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rJMSF039C12+          CTAAGAAGAAAGGTAAGTTTAAGCCAAAGAAATCAAAAAAGAGAAAGCCTTCGAGTTAAT
rJMSF037K03+          CTAAGAAGAAAGGTAAGTTTAAGCCNAAGAAATCAAAANAGAGAAAGCCTTCGAGCTAAT
rJMSF050C04+          CTAAGAAGAAAGGTAAGTTTAAGCCAAAGAAATCAAAAAAGAGAAAGCCTTCGAGTTAAT
                      ____________________________________________________________
consensus             CTAAGAAGAAAGGTAAGTTTAAGCCAAAGAAATCAAAAAAGAGAAAGCCTTCGAGTTAAT
 
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rJMSF039C12+          CAATTATCAAATTCATCGACATTTTTGCTGTGCTTAGGATTTTATAAAACAAGAAATTTC
rJMSF037K03+          CAATNATCAAATTCATCGACATTTTTGCTGTGCTTAGGATTCTATAAANCANGAAATTTC
rJMSF050C04+          CAATTATCAAATTCATCGACATTTTTGCTGTGCTTAGGATTTTATAAAACAAGAAATTTC
                      ____________________________________________________________
consensus             CAATTATCAAATTCATCGACATTTTTGCTGTGCTTAGGATTTTATAAAACAAGAAATTTC
 
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rJMSF039C12+          TTTGTAATGTTGCTCAAGCCCAA                                     
rJMSF037K03+          TTTGTAATGNTGCTCAAGCCCAACTTTTGCGAAAATGNGAATCTAGTCCTAATTTTGCTT
rJMSF050C04+          TTTGTAATGTTGCTCAAGCCCAA-TTTTGAGAAAATGAGAATCTAGTCCTAATTTTGCTT
                      ____________________________________________________________
consensus             TTTGTAATGTTGCTCAAGCCCAACTTTTGCGAAAATGAGAATCTAGTCCTAATTTTGCTT
 
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rJMSF037K03+          TTTGTTTTCTCTGTTTT                                           
rJMSF050C04+          TTTGTTTTCTCTGTTTTAATGGTCATTCTGTATTACACTTTAAATTATTTATTTGACCCC
                      ____________________________________________________________
consensus             TTTGTTTTCTCTGTTTTAATGGTCATTCTGTATTACACTTTAAATTATTTATTTGACCCC