Contig 004406:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF021L05+                                                        TAAGCTTGANCAGT
                      ____________________________________________________________
consensus                                                           TAAGCTTGANCAGT
 
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rJMSF021L05+          AGGTAGAGACTAATATTTCATCCCTCAACAGCCTCATCACAATATAGGCTGGATTTGCTC
                      ____________________________________________________________
consensus             AGGTAGAGACTAATATTTCATCCCTCAACAGCCTCATCACAATATAGGCTGGATTTGCTC
 
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rJMSF021L05+          CCCTCATTTGACTGATTTTCAATGATATCTTAAATATCATTGACATTCCAATTAGTGATT
                      ____________________________________________________________
consensus             CCCTCATTTGACTGATTTTCAATGATATCTTAAATATCATTGACATTCCAATTAGTGATT
 
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rJMSF021L05+          CCAACTCTTTTGGAATGTCTGAAACCTATAACCAAGTAAAAAACACTTTAGGAAAAGTAT
                      ____________________________________________________________
consensus             CCAACTCTTTTGGAATGTCTGAAACCTATAACCAAGTAAAAAACACTTTAGGAAAAGTAT
 
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rJMSF021L05+          ACACATAGGATTTAGTGTTTGTATCTAATAAGACAGTGATGCGTTTAGTATTGTTAGCTT
rJMSF041N10+                                                                    TT
rJMSF050B18+                                                                    TT
                      ____________________________________________________________
consensus             ACACATAGGATTTAGTGTTTGTATCTAATAAGACAGTGATGCGTTTAGTATTGTTAGCTT
 
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rJMSF021L05+          ACCTTGTTATATTTATTGTAGAGGAGGTTTGCAGGGATTCCTACCAACTCTGAACACTCC
rJMSF041N10+          ACCTTGTTATATTTATTGTAGAGGAGGTTTGCAGGGATTCCTACCAACTCTGAACACTCC
rJMSF050B18+          ACCTTGTTATATTTCTTGTAGAGGAGGTTTGCAGGGATTCCTACCAAGTCTGAACACTCC
                      ____________________________________________________________
consensus             ACCTTGTTATATTTATTGTAGAGGAGGTTTGCAGGGATTCCTACCAACTCTGAACACTCC
 
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rJMSF021L05+          CTATCCCATAAAAGGAAGGGAGCATCTGATAATCCTTTATCCATAACTCTTACTTTTACC
rJMSF041N10+          CTATCCCATAAAAGGAAGGGAGCATCTGATAATCCTTTATCCATAACTCTTACTTTTACC
rJMSF037I21+               CCATAAAAGGAAGGGAGCATGTGATAATCCTATATCCATAACTCTTATTTTNNCG
rJMSF050B18+          CTATCCCATAAAAGGAAGGGAGCATCTGATAATCCTATATCCATAACTCTTATTTTTACC
                      ____________________________________________________________
consensus             CTATCCCATAAAAGGAAGGGAGCATCTGATAATCCTTTATCCATAACTCTTATTTTTACC
 
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rJMSF021L05+          CGATATCTTGCCATTCCTTCCTTGTACTTTTTATCACAATTAGTACAAAGTAGATCAT-C
rJMSF041N10+          CGATATCTTGCCATTCCTTCCTTGTACTTTTTATCACAATTAGTACAAAGTAGATCAT-C
rJMSF037I21+          NGATATGNTGCCATTCCTTCCTTGTANNNTTTATCACAATTAGAACA             
rJMSF050B18+          TGATATCTTGCCATTCCTTCCTTGTACTTTTTATCACAATTAGAACAAAGTNGATCATGC
                      ____________________________________________________________
consensus             CGATATCTTGCCATTCCTTCCTTGTACTTTTTATCACAATTAGTACAAAGTAGATCAT-C
 
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rJMSF021L05+          TCCATCTTGTGTCAGTTTTCTGTTGCAACCCGATGTCATGCAAGATATGTACATCCATCC
rJMSF041N10+          TCCATCTTGTGTCAGTTTTCTGTTGCAACCCGATGTCATGCAAGATATGTACATCCATCC
rJMSF050B18+          TCCATCTGGNTTCAGTNTTCTGTTGCAACCNGATGTCNNGCAAGATATGTACATCCATCC
                      ____________________________________________________________
consensus             TCCATCTTGTGTCAGTTTTCTGTTGCAACCCGATGTCATGCAAGATATGTACATCCATCC
 
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rJMSF021L05+          AAAGGAACCTTCAATTCCTACAATCTGTGCAGGGACATAAAACTCCCCATCCTGCATTGA
rJMSF041N10+          AAAGGAACCTTCAATTCCTACAATCTGTGCAGGGACATAAAACTCCCCATCCTGCATTGA
rJMSF050B18+          AAATGAACCTTCAATTCNTACNATCTCTGCAGGGACATAAAAATCCCCATCGTGCATTGA
                      ____________________________________________________________
consensus             AAAGGAACCTTCAATTCCTACAATCTGTGCAGGGACATAAAACTCCCCATCCTGCATTGA
 
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rJMSF021L05+          ACCAA                                                       
rJMSF041N10+          ACCAA                                                       
rJMSF050B18+          ACCAAATAATTAATTAGTAACACTGCTAACTGAGTGATTAAATCTAGTCCTAGCAGACAT
                      ____________________________________________________________
consensus             ACCAAATAATTAATTAGTAACACTGCTAACTGAGTGATTAAATCTAGTCCTAGCAGACAT
 
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rJMSF050B18+          AATGTAAAATGAATNCAATTCTCACNTGTTNGTTNTTCAATATATCACCAACTGAAGTGA
                      ____________________________________________________________
consensus             AATGTAAAATGAATNCAATTCTCACNTGTTNGTTNTTCAATATATCACCAACTGAAGTGA
 
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rJMSF050B18+          CAGTGAGAGCACCACTCCTGAANTCAGAAATCCCAGTGGANTGGGACATAACTNTTGGNT
                      ____________________________________________________________
consensus             CAGTGAGAGCACCACTCCTGAANTCAGAAATCCCAGTGGANTGGGACATAACTNTTGGNT