Contig 004404:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF049M18+                                                                     A
                      ____________________________________________________________
consensus                                                                        A
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026L11+                                              AAAAGAAAATGAGTCGGATTCAAG
rJMSF049M18+          AAGATAAAGTGGAGGATAAAATTGTCAAGTCTGGGAAAAAGAAAATGAGTCGGATTCAAG
                      ____________________________________________________________
consensus             AAGATAAAGTGGAGGATAAAATTGTCAAGTCTGGGAAAAAGAAAATGAGTCGGATTCAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026L11+          GAGAAGAGCTTCTATTGATACCAAGGAAGGTAAGGGGAAGACAGATAGGGAGGGCAGATC
rJMSF018O21+            GAAGAGCTTNTATTGATACCAANGAAGGTAAGGGGAAGACAGATAGGGAGGGCNGATC
rJMSF049M18+          GAGAAGAGCTTCTATTGATACCAAGGAAGGTAAGGGGAAGACAGATAGGGAGGGCAGATC
                      ____________________________________________________________
consensus             GAGAAGAGCTTCTATTGATACCAAGGAAGGTAAGGGGAAGACAGATAGGGAGGGCAGATC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026L11+          AAGTACTAAAGGAGATAGCGGCCGAAGAAGAGAAAAAGTTAAGGATGAAAAAAGAGAAAA
rJMSF018O21+          AANTACTAAAGGAGATAGCGGCCGAAGAAGAGAAAAAGTTAAGGATGAAAAAAGAGAAAA
rJMSF049M18+          AAGTACTAAAGGAGATAGCGGCCGAAGAAGAGAAAAAGTTAAGGATGAAAAAAGAGAAAA
                      ____________________________________________________________
consensus             AAGTACTAAAGGAGATAGCGGCCGAAGAAGAGAAAAAGTTAAGGATGAAAAAAGAGAAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026L11+          ATCTAGACGCAAAGATGCAAGTGACTCTGGTAAACATAAGAGACAGCGCTCCTCTTCTGT
rJMSF018O21+          ATCTAGCCGCAAAGATGCAAGTGACTCTGGTAAACATAAGNGACAGCNNTCCTCTTCTGT
rJMSF049M18+          ATCTAGACGCAAAGATGCAAGTGACTCTGGTAAACATAAGAGACAGCGCTCCTCTTCTGT
                      ____________________________________________________________
consensus             ATCTAGACGCAAAGATGCAAGTGACTCTGGTAAACATAAGAGACAGCGCTCCTCTTCTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026L11+          TGGCAGCAGAGGTAGAGAAAGTAAGGATAATTTAGTTAGCTATCCCACTGATTCAAGTGA
rJMSF018O21+          TGGCAGCAGAGGTAGNGAAAGTAAGGATAATTTAGTTAGCTATCCCACTGATTCAAGTGA
rJMSF049M18+          TGGCAGCAGAGGTAGAGAAAGTAAGGATAATTTAGTTAGCTATCCCACTGATTCAAGTGA
                      ____________________________________________________________
consensus             TGGCAGCAGAGGTAGAGAAAGTAAGGATAATTTAGTTAGCTATCCCACTGATTCAAGTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026L11+          TGAATCTTCTGATGATTATAAAAGGAAGCTTTATTCAAGAAGACATAGATCACCTTCGCC
rJMSF018O21+          TGAATNTTCTGATGATTATAAAAGGAAGCTTTATTCAAGAAGACATAGATCACCTTCGCC
rJMSF049M18+          TGAATCTTCTGATGATTATAAAAGGAAGCTTTATTCAAGAAGACATAGATCACCTTCGCC
                      ____________________________________________________________
consensus             TGAATCTTCTGATGATTATAAAAGGAAGCTTTATTCAAGAAGACATAGATCACCTTCGCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026L11+          TGTCAGGTCGAGGAAAAGACAAGTTTCGAGGTCTCCTCATAGCAAGCACTCTCAGCGCAG
rJMSF018O21+          TGTCAGGTCGAGGAAAAGACAAGTTTCGAGGTCTCCTCATAGCAAGCACTCTCAGCGCAG
rJMSF049M18+          TGTCAGGTCGAGGAAAAGACAAGTTTCGAGGTCTCCTCATAGCAAGCACTCTCAGCGCAG
                      ____________________________________________________________
consensus             TGTCAGGTCGAGGAAAAGACAAGTTTCGAGGTCTCCTCATAGCAAGCACTCTCAGCGCAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026L11+          GCATTCTCCCTACTCTTCTCTTGAGACAACCAGGAGTAGGAGGTCAAGATCGAGATCTAG
rJMSF018O21+          GCATTCTCCCTACTCTTCTCTTGAGACAACCAGGAGTAGGAGGTCAAGATCGAGATCTAG
rJMSF049M18+          GCATTCTCCCTACTCTTCTCTTGAGACAACCAGGAGTAGGAGGTCAAGATCGAGATCTAG
                      ____________________________________________________________
consensus             GCATTCTCCCTACTCTTCTCTTGAGACAACCAGGAGTAGGAGGTCAAGATCGAGATCTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026L11+          GTCAAGGTCTCCAGCCCGTCGGAAGAGATGAAGGTGCGGGGCGACTGTATTAAGGTCGAT
rJMSF018O21+          GTCAAGGTCTCCAGCCCGTCGGAAGAGANGAAGGTGCGGGGCGACTGTATTAAGGTCGAT
rJMSF049M18+          GTCAAGGTCTCCAGCCCGTCGGAAGAGATGAAGGTGCGGGGCGACTGTATTAAGGTCGAT
                      ____________________________________________________________
consensus             GTCAAGGTCTCCAGCCCGTCGGAAGAGATGAAGGTGCGGGGCGACTGTATTAAGGTCGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026L11+          GAAACTTGTTGAATGTCGGATTTCTCGCGAGATAAGAGGATTTGTTTGCCCATTTGTTAC
rJMSF018O21+          GAAACTTGTTGAATGTCGGATTTCTCGCGAGATAAGAGGATTTGTTNGCCCATTTGTTAC
rJMSF049M18+          GAAACTTGTTGAATGTCGGATTTCTCGCGAGATAAGAGGATTTGTTTGCCCATTTGTTAC
                      ____________________________________________________________
consensus             GAAACTTGTTGAATGTCGGATTTCTCGCGAGATAAGAGGATTTGTTTGCCCATTTGTTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026L11+          CGAGGGATTTGCCTTATCATCGATTTCAATTGGCAAGGAGAAGAGGCAGGTAGTTGCAAT
rJMSF018O21+          CGAGGGATTTGCCTTATCATCGATTTCAATTGGCAAGGNGAAGAGGCAGGTAGTTGCAAT
rJMSF049M18+          CGAGGGATTTGCCTTATCATCGATTTCAATTGGCAAGGAGAAGAGGCAGGTAGTTGCAAT
                      ____________________________________________________________
consensus             CGAGGGATTTGCCTTATCATCGATTTCAATTGGCAAGGAGAAGAGGCAGGTAGTTGCAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF026L11+          TTGGAGAGGAAAGATTTTGGATGTGTTGTCTGTATTTTTCTGTTTTTTTTTTACCCCC  
rJMSF018O21+          TTGGAGAGGAAAGATTTTGGATG                                     
rJMSF049M18+          TTGGAGAGGAAAGATTTTGGATGTGTTGTCTGTATTTTTCTGTTTTTTTTTNACCCCCNC
                      ____________________________________________________________
consensus             TTGGAGAGGAAAGATTTTGGATGTGTTGTCTGTATTTTTCTGTTTTTTTTTTACCCCCNC