Contig 004401:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011K04Sequence354009562 (2)ref|XP_009617843.1|1e-18PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast612004401 (2)ref|XP_009759775.1|7e-41PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast
JMSF048O03Sequence698009562 (2)ref|XP_009617843.1|3e-67PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast540004401 (2)ref|XP_009759775.1|2e-43PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 2, chloroplast

Alignment

This contig is upended


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rJMSF011K04+                                                          GAGCAGCCTCCC
                      ____________________________________________________________
consensus                                                             GAGCAGCCTCCC
 
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rJMSF011K04+          AAGTTTGATTTCCNCAACCCGAAGACACCNTTTTATACTTCNCCGNGATTTTTNCCTCCT
                      ____________________________________________________________
consensus             AAGTTTGATTTCCNCAACCCGAAGACACCNTTTTATACTTCNCCGNGATTTTTNCCTCCT
 
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rJMSF011K04+          ACTAAAGTCGACAAGTGCNGAATAGTGGATTCGATTATTTCATACGGNTGCTTNTTGAGA
rJMSF048O03+          ACTAAAGTCGACAAGTGCNGAATAGTGGATTCGATTATTTCATACGGCTGCTTNTTGAGA
                      ____________________________________________________________
consensus             ACTAAAGTCGACAAGTGCNGAATAGTGGATTCGATTATTTCATACGGCTGCTTNTTGAGA
 
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rJMSF011K04+          GAATGCAGCGTTCAACNTTNTATAATCGGNGTNCGATCCCGATTAGAGAATGGTGTTGAG
rJMSF048O03+          GAATGCAGCGTTCAACNTTCTATAATCGGTGTNCGATCCCGATTAGAGAATGGTGTTGAG
                      ____________________________________________________________
consensus             GAATGCAGCGTTCAACNTTCTATAATCGGTGTNCGATCCCGATTAGAGAATGGTGTTGAG
 
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rJMSF011K04+          CTCAAAGATNCCNTGATGATGGGTGCGGNCTNTTATCNAACTCNAGCCGNGGTTGNTTNT
rJMSF048O03+          CTCAAAGATACCNTGATGATGAGTGCGGNCTATTATCAAACTCNAGCCGAGGTTGCTTNT
                      ____________________________________________________________
consensus             CTCAAAGATACCNTGATGATGGGTGCGGNCTATTATCAAACTCNAGCCGAGGTTGCTTNT
 
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rJMSF011K04+          TTGCTTTTTGAGGGGAAGGTTCCNATTGGCGTCGGTCCNAACNCCNAAATCNGGAATTGT
rJMSF048O03+          TTGCTTTTTGAGGGGAAGGTTCCAATTGGCGTCGGTCCNAACNCCNAAATCNGGAATTGT
                      ____________________________________________________________
consensus             TTGCTTTTTGAGGGGAAGGTTCCAATTGGCGTCGGTCCNAACNCCNAAATCNGGAATTGT
 
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rJMSF011K04+          ATAATNGACNAGAATGCCNGAATNGGGAAAGAAGTGATTNTTGCTAACAAAGAGGGCNTT
rJMSF048O03+          ATNATNGACNAGAATGCCNGAATCGGGAAAGAAGTGATTNTTGCTAACAAAGAGGGCNTT
                      ____________________________________________________________
consensus             ATAATNGACNAGAATGCCNGAATCGGGAAAGAAGTGATTNTTGCTAACAAAGAGGGCNTT
 
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rJMSF011K04+          GATGAAGCCGAGAGGGCNGAGGATGGGTTTTACNTCNGGTCGGGGATAACTGTCATAGTA
rJMSF048O03+          GATGAAGCCGAGAGGGCNGAGGATGGGTTTTACATCNGGTCGGGGATAACTGTCATAGTA
                      ____________________________________________________________
consensus             GATGAAGCCGAGAGGGCNGAGGATGGGTTTTACATCNGGTCGGGGATAACTGTCATAGTA
 
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rJMSF011K04+          AAGAACGCGNCCNTCAAAGNCNAGACNGTCNTATGAAGAAGTTGGCCGGCGGCTCGGGAG
rJMSF048O03+          AAGAACGCGNCCNTCAAAGNCNAGACNGTCNTATGAAGAAGTTGGCCGGCGGCTCGGGAG
                      ____________________________________________________________
consensus             AAGAACGCGNCCNTCAAAGNCNAGACNGTCNTATGAAGAAGTTGGCCGGCGGCTCGGGAG
 
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rJMSF011K04+          GATGATNTATAGGGAATTNGAAGCNCNGCNTATNTGCCTTATTATTAGTTAATAAGCNGC
rJMSF048O03+          GATGATNTATAGGGAATTNGAAGCGCNGCNTATNTGCCTTATTATTAGTTAATAAGCTGC
                      ____________________________________________________________
consensus             GATGATNTATAGGGAATTNGAAGCGCNGCNTATNTGCCTTATTATTAGTTAATAAGCTGC
 
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rJMSF011K04+          TAATAAGTAATAAGCCNTAGCTTCTCCCTTTTGTGTAAGTTCTGTGTTGTAAGNGAATTT
rJMSF048O03+          TAATAAGTAATAAGCCTTAGCTTCTCCNTTTTGNGTAAGTTCTGTGTTGTAAGNGAATTT
                      ____________________________________________________________
consensus             TAATAAGTAATAAGCCTTAGCTTCTCCCTTTTGTGTAAGTTCTGTGTTGTAAGNGAATTT