Contig 004400:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF041J06Sequence739004400 (6)ref|XP_009771672.1|3e-112PREDICTED: Golgi SNAP receptor complex member 1-1-like isoform X1 [Nicotiana sy123004400 (6)ref|XP_009771672.1|3e-06PREDICTED: Golgi SNAP receptor complex member 1-1-like isoform X1 [Nicotiana sy
JMSF041K05Sequence737004400 (6)ref|XP_009771672.1|4e-113PREDICTED: Golgi SNAP receptor complex member 1-1-like isoform X1 [Nicotiana sy688004400 (6)ref|XP_009771672.1|2e-87PREDICTED: Golgi SNAP receptor complex member 1-1-like isoform X1 [Nicotiana sy
JMSF048A12Sequence697004400 (6)ref|XP_009771672.1|8e-131PREDICTED: Golgi SNAP receptor complex member 1-1-like isoform X1 [Nicotiana sy782004400 (6)ref|XP_009771672.1|2e-98PREDICTED: Golgi SNAP receptor complex member 1-1-like isoform X1 [Nicotiana sy

Alignment

This contig is upended


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JMSF041K05-                                               GAACCGTCTCCCTCAACTCCAAC-
JMSF041J06-                                               GAACCGTCTCCCTCAACTCCAACG
                      ____________________________________________________________
consensus                                                 GAACCGTCTCCCTCAACTCCAACG
 
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JMSF041K05-           TTCCACCCACCAAAATATCAATATTACGCTTCCCAAATTTGGTTTCTACTCACCTTAATC
JMSF041J06-           TTCCACCCACCAAAATATCAATATTACGCTTCCCAAATTTGGTTTCTACTCACCTTAATC
                      ____________________________________________________________
consensus             TTCCACCCACCAAAATATCAATATTACGCTTCCCAAATTTGGTTTCTACTCACCTTAATC
 
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JMSF041K05-           TCTTCGACGTACTAAGCAAACCGCAGGTTGTTTGTCTGCTTGTCTGCCTCTCTCGACCAC
JMSF041J06-           TCTTCGACGTACTAAGCAAACCGCAGGTTGTTTGTCTGCTTGTCTGCCTCTCTCGACCAC
JMSF048A12-                                   AGGTTGTTTGTCTGCTTGTCTGCCTCTCTCGACCAC
                      ____________________________________________________________
consensus             TCTTCGACGTACTAAGCAAACCGCAGGTTGTTTGTCTGCTTGTCTGCCTCTCTCGACCAC
 
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JMSF041K05-           TCCGTTGCTGGGTTTCACATGGATCCGCCGCCTAGCTCTTGGGATTCCTTGCGAAAACAG
JMSF041J06-           TCCGTTGCTGGGTTTCACATGGATCCGCCGCCTAGCTCTTGGGATTCCTTGCGAAAACAG
JMSF048A12-           TCCGTTGCTGGGTTTCACATGGATCCGCCGCCTAGCTCTTGGGATTCCTTGCGAAAACAG
                      ____________________________________________________________
consensus             TCCGTTGCTGGGTTTCACATGGATCCGCCGCCTAGCTCTTGGGATTCCTTGCGAAAACAG
 
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JMSF041K05-           GCAAGGAAGCTTGAAGCTCAGCTCGATGAGCAGATGCAGTTATATCGTAAATTGGTGAAC
JMSF041J06-           GCAAGGAAGCTTGAAGCTCAGCTCGATGAGCAGATGCAGTTATATCGTAAATTGGNGAAC
JMSF048A12-           GCAAGGAAGCTTGAAGCTCAGCTCGATGAGCAGATGCAGTTATATCGTAAATTGGTGAAC
                      ____________________________________________________________
consensus             GCAAGGAAGCTTGAAGCTCAGCTCGATGAGCAGATGCAGTTATATCGTAAATTGGTGAAC
 
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JMSF041K05-           ACAAAAGTTGACAATGCCACAGATAATGACCTTGAAATCAGGATAGATCAGCTACTT-AA
JMSF041J06-           ACAAAAGTTGACAATGCCACAGATAATGACCTTGAAATCAGGATAGATCAGCTACTT-AA
JMSF048A12-           ACAAAAGTTGACAATGCCACAGATAATGACCTTGAAATCAGGATAGATCAGCTACTT-AA
rJMSF041K05+                          CCACAGATAATGNCCTTGGAATCAGGATAGATCAGCTACTTNAA
                      ____________________________________________________________
consensus             ACAAAAGTTGACAATGCCACAGATAATGACCTTGAAATCAGGATAGATCAGCTACTT-AA
 
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JMSF041K05-           ACAGCTGCAA-CAAGTGAACTCTCAAATGC-AAACGTGGGTCTCATCTGGGGGATCTGAA
JMSF041J06-           ACAGCTGCAA-CAAGTGAACTCTCAAATGC-AAACGTGGGTCTCATCTGGGGGATCTGAA
JMSF048A12-           ACAGCTGCAA-CAAGTGAACTCTCAAATGC-AAACGTGGGTCTCATCTGGGGGATCTGAA
rJMSF041K05+          ACAGCTGCAACCAAGTGAACTCTCAAATGCAAAACGTGGGTCTCATCTGGGGGATCTGAA
rJMSF048A12+                            ACTCTCNAATGC-AAACGTGGGTCTCATCTGGGGGATCTGAA
                      ____________________________________________________________
consensus             ACAGCTGCAA-CAAGTGAACTCTCAAATGC-AAACGTGGGTCTCATCTGGGGGATCTGAA
 
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JMSF041K05-           ATA-TTTTCGCATACATTGACTCGCCATCAAGAAATCCTTCAGGATCTTACTCAGGAATT
JMSF041J06-           ATA-TTTTCGCATACATTGACTCGCCATCAAGAAATCCTTCAGGATCTTACTCAGGAATT
JMSF048A12-           ATA-TTTTCGCATACATTGACTCGCCATCAAGAAATCCTTCAGGATCTTACTCAGGAATT
rJMSF041K05+          ATATTTTTCGCATACATTGACTCGCCATCAAGAAATCCTTCAGGATCTTACTCAGGAATT
rJMSF048A12+          ATA-TTTTCGCATACATTGACTCGCCATCAAGAAATCCTTCAGGATCTTACTCAGGAATT
                      ____________________________________________________________
consensus             ATA-TTTTCGCATACATTGACTCGCCATCAAGAAATCCTTCAGGATCTTACTCAGGAATT
 
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JMSF041K05-           TAATCGCCTCCGTTCTAGTCATAGAGCTAAAAAAGAGCATGCCTCATTGCTTGATGATTT
JMSF041J06-           TAATCGCCTCCGTTCTAGTCATAGAGCTAAAAAAGAGCATGCCTCATTGCTTGATGATTT
JMSF048A12-           TAATCGCCTCCGTTCTAGTCATAGAGCTAAAAAAGAGCATGCCTCATTGCTTGATGATTT
rJMSF041K05+          TAATCGCCTCCGTTCTAGTCATAGAGCTAAAAAAGAGCATGCCTCATTGCTTGATGATTT
rJMSF048A12+          TAATCGCCTCCGTTCTAGTCATAGAGCTAAAAAAGAGCATGCCTCATTGCTTGATGATTT
                      ____________________________________________________________
consensus             TAATCGCCTCCGTTCTAGTCATAGAGCTAAAAAAGAGCATGCCTCATTGCTTGATGATTT
 
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JMSF041K05-           TAGGGAATTTGATCGCACTAGAT---ATCTGGAAGATGATGGTGGCTCTTATGATCAAGC
JMSF041J06-           TAGGGAATTTGATCGCACTAGAT---ATCTGGAAGATGATGGTGGCTCTTATGATCAAGC
JMSF048A12-           TAGGGAATTTGATCGCACTAGATTAGATCTGGAAGATGATGGTGGCTCTTATGATCAAGC
rJMSF041K05+          TAGGGAATTTGATCGCACTAGAT---ATCTGGAAGATGATGGTGGCTCTTATGATCAAGC
rJMSF048A12+          TAGGGAATTTGATCGCACTAGATTAGATCTGGAAGATGATGGTGGCTCTTATGATCAAGC
                      ____________________________________________________________
consensus             TAGGGAATTTGATCGCACTAGAT---ATCTGGAAGATGATGGTGGCTCTTATGATCAAGC
 
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JMSF041K05-           GCTTCTTAATGAGCGTGCTTCCCTACACAGGAGCACAGGACAGATGGATGGCGTGATTTC
rJMSF041J06+                                                   AGATGGANGGCGTGNTTTA
JMSF041J06-           GCTTCTTAATGAGCGTGCTTCCCTACACAGGAGCACAGGACAGATGGATGGCGTGATTTC
JMSF048A12-           GCTTCTTAATGAGCGTGCTTCCCTACACAGGAGCACAGGACAGATGGATGGCGTGATTTC
rJMSF041K05+          GCTTCTTAATGAGCGTGCTTCCCTACACAGGAGCACAGGACAGATGGATGGCGTGATTTC
rJMSF048A12+          GCTTCTTAATGAGCGTGCTTCCCTACACAGGAGCACAGGACAGATGGATGGCGTGATTTC
                      ____________________________________________________________
consensus             GCTTCTTAATGAGCGTGCTTCCCTACACAGGAGCACAGGACAGATGGATGGCGTGATTTC
 
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JMSF041K05-           TCAAGCTCAAGAAACTATAAAGGCACTTGTGTACCAACGATCAACATTCGGTGGCATTAA
rJMSF041J06+          TCAAGCTCANGNAANTATAAAGGCNCTTGNGTNCCANCGATCAACATTCNGTGGCATTAA
JMSF041J06-           TCAAGCTCAAGAAACTATAAAGGCACTTGTGTACCAACGATCAACATTCGGTGGCATTAA
JMSF048A12-           TCAAGCTCAAGAAACTATAAAGGCACTTGTGTACCAACGATCAACATTCGGTGGCATTAA
rJMSF041K05+          TCAAGCTCAAGAAACTATAAAGGCACTTGTGTACCAACGATCAACATTCGGTGGCATTAA
rJMSF048A12+          TCAAGCTCAAGAAACTATAAAGGCACTTGTGTACCAACGATCAACATTCGGTGGCATTAA
                      ____________________________________________________________
consensus             TCAAGCTCAAGAAACTATAAAGGCACTTGTGTACCAACGATCAACATTCGGTGGCATTAA
 
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JMSF041K05-           TTCCAAGCTTAGCAATGTCAGCAGTCGGCTTCCAACTGTTAATCACATTCTTTCGTCGAT
rJMSF041J06+          TTCCAAGCTTANCAANGTCAGCAGTCGGCTTCCAACTGTTAATC                
JMSF041J06-           TTCCAAGCTTAGCAATGTCAGCAGTCGGCTTCCAACTGTTAATCACATTCTTTCGTCGAT
JMSF048A12-           TTCCAAGCTTAGCAATGTCAGCAGTCGGCTTCCAACTGTTAATCACATTCTTTCGTCGAT
rJMSF041K05+          TTCCAAGCTTAGCAATGTCAGCAGTCGGCTTCCAACTGTTAATCACATTCTTTCGTCGAT
rJMSF048A12+          TTCCAAGCTTAGCAATGTCAGCAGTCGGCTTCCAACTGTTAATCACATTCTTTCGTCGAT
                      ____________________________________________________________
consensus             TTCCAAGCTTAGCAATGTCAGCAGTCGGCTTCCAACTGTTAATCACATTCTTTCGTCGAT
 
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JMSF041K05-           A                                                           
JMSF041J06-           AA                                                          
JMSF048A12-           AAAGAAGAGAAAGTCCATGGACACGATCGTTCTCTCGTTAGTTGCCTCAGCCTGCATGTT
rJMSF041K05+          AAAGAAGAGAAAGTCCATGGACACGATCGTTCTCTCGTTAGTTGCCTCAGCCTGCATGTT
rJMSF048A12+          AAAGAAGAGAAAGTCCATGGACACGATCGTTCTCTCGTTAGTTGCCTCAGCCTGCATGTT
                      ____________________________________________________________
consensus             AAAGAAGAGAAAGTCCATGGACACGATCGTTCTCTCGTTAGTTGCCTCAGCCTGCATGTT
 
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JMSF048A12-           TCTT                                                        
rJMSF041K05+          TCTTATCTTGATTTACTGGTTCACAAAATGAGAAGGTACCATTGTGCATCTCCAAGGCTT
rJMSF048A12+          TCTTATCTTGATTTACTGGTTCACAAAATGAGAAGGTACCATTGTGCATCTCCAAGGCTT
                      ____________________________________________________________
consensus             TCTTATCTTGATTTACTGGTTCACAAAATGAGAAGGTACCATTGTGCATCTCCAAGGCTT
 
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rJMSF041K05+          CAGCATGTTTGAGTGCTCCATTTTATTCTTTTGTATATTACCTAGTGTAATTTTTATTTT
rJMSF048A12+          CAGCATGTTTGAGTGCTCCATTTTATTCTTTTGTATATTACCTAGTGTAATTTTTATTTT
                      ____________________________________________________________
consensus             CAGCATGTTTGAGTGCTCCATTTTATTCTTTTGTATATTACCTAGTGTAATTTTTATTTT
 
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rJMSF041K05+          ATTTTATTTTTTTGGTTGTATTTTTAAC                                
rJMSF048A12+          ATTTTATTTTTTTGGTTGTATTTTTAACATGGGAGAAATCTTGAATTGTTCTTTTATGCA
                      ____________________________________________________________
consensus             ATTTTATTTTTTTGGTTGTATTTTTAACATGGGAGAAATCTTGAATTGTTCTTTTATGCA
 
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rJMSF048A12+          TTCTGTTGTTCATATACAAACACAAAGTTATTGTTAAAAAGTCAGTATCAGAGCTTCATG
                      ____________________________________________________________
consensus             TTCTGTTGTTCATATACAAACACAAAGTTATTGTTAAAAAGTCAGTATCAGAGCTTCATG
 
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rJMSF048A12+          ATTCACTGACACCAGTTTGTAGACTAGGAGAAAAACATCAATTTGGGGAAATATAGCATT
                      ____________________________________________________________
consensus             ATTCACTGACACCAGTTTGTAGACTAGGAGAAAAACATCAATTTGGGGAAATATAGCATT