Contig 004399:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011E03Sequence386006427 (2)ref|XP_009604993.1|1e-31PREDICTED: activator of 90 kDa heat shock protein ATPase homolog [Nicotiana tom769004399 (2)ref|XP_007029027.1|2e-84Aha1 domain-containing protein isoform 1 [Theobroma cacao] ref|XP_007029028.1| A
JMSF047N09Sequence685006427 (2)ref|XP_009604993.1|4e-96PREDICTED: activator of 90 kDa heat shock protein ATPase homolog [Nicotiana tom765004399 (2)ref|XP_010111375.1|9e-85Activator of 90 kDa heat shock protein ATPase-1-like protein [Morus notabilis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011E03+                     GGCCCGCCAAGGATGAGCNTGAGTCGAAAACGCCAGTTAAGAAGACCAC
rJMSF047N09+                         CGCCAAGGATGAGCCTGAGTCGAAAACGCCAGTTAAGAAGACCAC
                      ____________________________________________________________
consensus                        GGCCCGCCAAGGATGAGCCTGAGTCGAAAACGCCAGTTAAGAAGACCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011E03+          CGGTGGTGGCGCAGCGGCGGCGGCTCCGGTCGCCGGTGAGAATGCGAAAGCAGTGACGAA
rJMSF047N09+          CGGTGGTGGCGCAGCGGCGGCGGCTCCGGTCGCCGGTGAGAATGCGAAAGCAGTGACGAA
                      ____________________________________________________________
consensus             CGGTGGTGGCGCAGCGGCGGCGGCTCCGGTCGCCGGTGAGAATGCGAAAGCAGTGACGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011E03+          GGATGCGGTGAAAGAGAAGAAGCCAAAGCCGAAGGAAGGCTTTAAGACGATCACAATGTC
rJMSF047N09+          GGATGCGGTGAAAGAGAAGAAGCCAAAGCCGAAGGAAGGCTTTAAGACGATCACAATGTC
                      ____________________________________________________________
consensus             GGATGCGGTGAAAGAGAAGAAGCCAAAGCCGAAGGAAGGCTTTAAGACGATCACAATGTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011E03+          GGAGAAGTTTCATTGTAGGTCAAGGGATTTGTTCGAGATACTGATGGATGAGAATAGGTG
rJMSF047N09+          GGAGAAGTTTCATTGTAGGTCAAGGGATTTGTTCGAGATACTGATGGATGAGAATAGGTG
                      ____________________________________________________________
consensus             GGAGAAGTTTCATTGTAGGTCAAGGGATTTGTTCGAGATACTGATGGATGAGAATAGGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011E03+          GAAGGGGTTCACGCAGAGCAATGCCAGGATCAGTAAGGAGGTTGGAGGTGAGTTTAGCAT
rJMSF047N09+          GAAGGGGTTCACGCAGAGCAATGCCAGGATCAGTAAGGAGGTTGGAGGTGAGTTTAGCAT
                      ____________________________________________________________
consensus             GAAGGGGTTCACGCAGAGCAATGCCAGGATCAGTAAGGAGGTTGGAGGTGAGTTTAGCAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011E03+          ATTCGATGGATCGGTGACTGGGACCAACTTAGAGCTGCAGGAAGGCAAGTTGATTGTGCA
rJMSF047N09+          ATTCGATGGATCGGTGACTGGGACCAACTTAGAGCTGCAGGAAGGCAAGTTGATTGTGCA
                      ____________________________________________________________
consensus             ATTCGATGGATCGGTGACTGGGACCAACTTAGAGCTGCAGGAAGGCAAGTTGATTGTGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011E03+          GAAATGGCGATTCGGGAGCTGGCCGGATGGTATCCTCTCCACGGTCCGACTCACTTTTGA
rJMSF047N09+          GAAATGGCGATTCGGGAACTGGCCGGATGGTATCCTCTCCACGGTCCGACTCACTTTTGA
                      ____________________________________________________________
consensus             GAAATGGCGATTCGGGAGCTGGCCGGATGGTATCCTCTCCACGGTCCGACTCACTTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011E03+          TGAGCCCGAACCTGGAGTTACAGTCGTTAAGCTGACCCACACCGACGTACCAGAGGAAGA
rJMSF047N09+          TGAGCCCGAACCTGGAGTTACAGTCGTTAAGCTGACCCACACCGACGTACCAGAGGAAGA
                      ____________________________________________________________
consensus             TGAGCCCGAACCTGGAGTTACAGTCGTTAAGCTGACCCACACCGACGTACCAGAGGAAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011E03+          TAGATATGGGAATGAAACTGTGGTGGAGAACACGGAGAGAGGATGGCGGGATCTCATTTT
rJMSF047N09+          TAGATATGGGAATGAAACTGTGGTGGAGAACACGGAGAGAGGATGGCGGGATCTCATTTT
                      ____________________________________________________________
consensus             TAGATATGGGAATGAAACTGTGGTGGAGAACACGGAGAGAGGATGGCGGGATCTCATTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011E03+          TCACAAGATTCGAGCTGTGTTTGGTTTTGGGATTTGAAGATTGAAGCTCAGTCTCAGATT
rJMSF047N09+          TCACAAGATTCGAGCTGTGTTTGGTTTTGGGATTTGAAGATTGAAGCTCAGTCTCAGATT
                      ____________________________________________________________
consensus             TCACAAGATTCGAGCTGTGTTTGGTTTTGGGATTTGAAGATTGAAGCTCAGTCTCAGATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011E03+          CTCTCAGTCAATGCCCTCTTCTAGTGTAGAATTTCATATCTTCTCTTCTCTTGTCTGGAC
rJMSF047N09+          CTCTCAGTCAATGCCCTCTTCTAGTGTAGAATTTCATATCTTCTCTTCTCTTGTCTGGAC
                      ____________________________________________________________
consensus             CTCTCAGTCAATGCCCTCTTCTAGTGTAGAATTTCATATCTTCTCTTCTCTTGTCTGGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011E03+          TTTCTAGTGTTGATTGAGTGTGAACTGTTGGTAACCAGTTGAGTATTGGCTCAGTAGTTC
rJMSF047N09+          TTTCTAGTGTTGATTGAGTGTGAACTGTTGGTAACCAGTTGAGTATTGGCTCAGTAGTTC
                      ____________________________________________________________
consensus             TTTCTAGTGTTGATTGAGTGTGAACTGTTGGTAACCAGTTGAGTATTGGCTCAGTAGTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF011E03+          ATTCAGTTGGGTTTTATTTTAGTCATATTTTTTTCTTCTTCATGCTTAAGATTCAAGAAC
rJMSF047N09+          ATTCAGTTGGGTTTTATTTTAGTCATATTTTTTTCTTCTTCATGCTTAAGATTCAAGAAC
                      ____________________________________________________________
consensus             ATTCAGTTGGGTTTTATTTTAGTCATATTTTTTTCTTCTTCATGCTTAAGATTCAAGAAC