Contig 004398:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013B08Sequence502000665 (5)ref|XP_004251615.1|4e-58PREDICTED: cyclin-dependent kinase F-1 [Solanum lycopersicum]670004398 (2)emb|CAN61169.1|1e-69hypothetical protein VITISV_010446 [Vitis vinifera]
JMSF047L24Sequence651002242 (13)ref|XP_011102070.1|1e-92PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein 756004398 (2)emb|CAN61169.1|2e-95hypothetical protein VITISV_010446 [Vitis vinifera]

Alignment

This contig is upended


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rJMSF047L24+                                  AAAGGTTTAGCTTTCCTGCATGAAGANTCAGAAATA
                      ____________________________________________________________
consensus                                     AAAGGTTTAGCTTTCCTGCATGAAGANTCAGAAATA
 
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rJMSF047L24+          AAAATTATTCATAGAGACATTAAGGCCAACAATGTGCTTCTTGACAAAGAACTCAATCCA
                      ____________________________________________________________
consensus             AAAATTATTCATAGAGACATTAAGGCCAACAATGTGCTTCTTGACAAAGAACTCAATCCA
 
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rJMSF013B08+                                CTAAACTTGACGAGGATGAGAATACACACATCACCACA
rJMSF047L24+          AAAATTTCTGATTTTGGTCTAGCTAAACTTGACGAGGATGAGAATACACACATCACCACA
                      ____________________________________________________________
consensus             AAAATTTCTGATTTTGGTCTAGCTAAACTTGACGAGGATGAGAATACACACATCACCACA
 
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rJMSF013B08+          AGAATTGCTGGGACAGTAGGATACATGGCGCCNGAATATGCATTGTGGGGCTACTTAACA
rJMSF047L24+          AGAATTGCTGGGACAGTAGGATACATGGCGCCTGAATATGCATTGTGGGGCTACTTAACA
                      ____________________________________________________________
consensus             AGAATTGCTGGGACAGTAGGATACATGGCGCCTGAATATGCATTGTGGGGCTACTTAACA
 
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rJMSF013B08+          TTTAAAGCTGATGTCTATAGTTTCGGGATAGTGGCACTGGAAATTCTTGCCGGGAAGAAC
rJMSF047L24+          TTTAAAGCTGATGTCTATAGTTTCGGGATAGTGGCACTGGAAATTCTTGCCGGGAAGAAC
                      ____________________________________________________________
consensus             TTTAAAGCTGATGTCTATAGTTTCGGGATAGTGGCACTGGAAATTCTTGCCGGGAAGAAC
 
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rJMSF013B08+          AACGTGAAGCATCATTCCGATGAGAATTATTTTTGCCTTCTTGATTGGGCACNTGTTCTT
rJMSF047L24+          AACGTGAAGCATCATTCCGATGAGAATTATTTTTGCCTTCTTGATTGGGCACTTGTTCTT
                      ____________________________________________________________
consensus             AACGTGAAGCATCATTCCGATGAGAATTATTTTTGCCTTCTTGATTGGGCACTTGTTCTT
 
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rJMSF013B08+          CAAAGAAAAGGAAACTTAATGGAGTTCATAGATCCAAGATTGGGTTCTAATTTTGACAAA
rJMSF047L24+          CAAAGAAAAGGAAACTTAATGGAGTTCATAGATCCAAGATTGGGTTCTAATTTTGACAAA
                      ____________________________________________________________
consensus             CAAAGAAAAGGAAACTTAATGGAGTTCATAGATCCAAGATTGGGTTCTAATTTTGACAAA
 
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rJMSF013B08+          GATGAGGCACTCAGAATGATTAAAGTGGCTTTGCTCTGTACTAATACTTCACCAGTCCTT
rJMSF047L24+          GATGAGGCACTCAGAATGATTAAAGTGGCTTTGCTCTGTACTAATACTTCACCAGTCCTT
                      ____________________________________________________________
consensus             GATGAGGCACTCAGAATGATTAAAGTGGCTTTGCTCTGTACTAATACTTCACCAGTCCTT
 
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rJMSF013B08+          AGGCCATCCATGTCCGCAGTAGTTAGCATGCTTGAAGGTCATGATGATATTCTTGAGTAT
rJMSF047L24+          AGGCCATCCATGTCTGCAGTAGTTAGCATGCTTGAAGGTCATGATGATATTCTTGAGTAT
                      ____________________________________________________________
consensus             AGGCCATCCATGTCTGCAGTAGTTAGCATGCTTGAAGGTCATGATGATATTCTTGAGTAT
 
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rJMSF013B08+          GATCCCAATCTAGATGAATTCAACTCTCAAGCAATGAATGATCATTATGATGAAATGGCA
rJMSF047L24+          GATCCCAATCTAGATGAATTCAACTCTCAAGCAATGAATGATCATTATGATGAAATGGCA
                      ____________________________________________________________
consensus             GATCCCAATCTAGATGAATTCAACTCTCAAGCAATGAATGATCATTATGATGAAATGGCA
 
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rJMSF013B08+          GTC                                                         
rJMSF047L24+          GTCGGCTCAAGAGATTTTCCCAACAAAGTAGATTTGTCATCATAAGCAAATTAATAGTGA
                      ____________________________________________________________
consensus             GTCGGCTCAAGAGATTTTCCCAACAAAGTAGATTTGTCATCATAAGCAAATTAATAGTGA
 
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rJMSF047L24+          AAATTTGCATCCAAAAATACAAGAAATCTATTGAGATGTTAGATGTATGCATGCATGTAT
                      ____________________________________________________________
consensus             AAATTTGCATCCAAAAATACAAGAAATCTATTGAGATGTTAGATGTATGCATGCATGTAT
 
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rJMSF047L24+          CAATAAGTAAACAAAAGTGTAATTCTGTAAGGATACTCAAATACGTTTATAATCAATTAT
                      ____________________________________________________________
consensus             CAATAAGTAAACAAAAGTGTAATTCTGTAAGGATACTCAAATACGTTTATAATCAATTAT