| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009G21 | Sequence | 553 | 010687 (5) | ref|XP_002285123.1| | 2e-17 | PREDICTED: yrdC domain-containing protein, mitochondrial isoform X1 [Vitis vini | 717 | 004394 (7) | ref|XP_009798167.1| | 1e-104 | PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana |
| JMSF008F11 | Sequence | 350 | 010687 (5) | 752 | 004394 (7) | ref|XP_009798167.1| | 2e-112 | PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana | |||
| JMSF021K18 | Sequence | 658 | 010687 (5) | ref|XP_009592140.1| | 1e-33 | PREDICTED: yrdC domain-containing protein, mitochondrial [Nicotiana tomentosifo | 748 | 004394 (7) | ref|XP_009798167.1| | 2e-122 | PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana |
| JMSF022D14 | Sequence | 611 | 010687 (5) | ref|XP_009592140.1| | 3e-23 | PREDICTED: yrdC domain-containing protein, mitochondrial [Nicotiana tomentosifo | 771 | 004394 (7) | ref|XP_009798167.1| | 7e-125 | PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana |
| JMSF045J05 | Sequence | 810 | 004394 (7) | ref|XP_009592140.1| | 1e-65 | PREDICTED: yrdC domain-containing protein, mitochondrial [Nicotiana tomentosifo | 862 | 004394 (7) | ref|XP_009798167.1| | 8e-133 | PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana |
| JMSF047H02 | Sequence | 669 | 015857 | 778 | 004394 (7) | ref|XP_009798167.1| | 5e-109 | PREDICTED: yrdC domain-containing protein, mitochondrial isoform X3 [Nicotiana | |||
This contig is upended
. : . : . : . : . : . :
JMSF045J05- GAGTCGACGTGTCTTCCTCCCTCACGAGTCATGATGAGT
____________________________________________________________
consensus GAGTCGACGTGTCTTCCTCCCTCACGAGTCATGATGAGT
. : . : . : . : . : . :
JMSF045J05- CACGACTGTCGACAGACGGCGACTCACACCTCAACTTCCCCGCCGGCAAGCCGCTCCGCC
____________________________________________________________
consensus CACGACTGTCGACAGACGGCGACTCACACCTCAACTTCCCCGCCGGCAAGCCGCTCCGCC
. : . : . : . : . : . :
JMSF045J05- GTGAGCCGTTGACGCCGCCTCTCTCTTCGCAAATCGCCGACGCCCCTCTTGACGACAGTC
____________________________________________________________
consensus GTGAGCCGTTGACGCCGCCTCTCTCTTCGCAAATCGCCGACGCCCCTCTTGACGACAGTC
. : . : . : . : . : . :
JMSF045J05- GCCAGTACGCCTCTGTCGCTCTGTCTCTTCAATCTGCCCACTGTCGACCGTCTGTCTCGC
____________________________________________________________
consensus GCCAGTACGCCTCTGTCGCTCTGTCTCTTCAATCTGCCCACTGTCGACCGTCTGTCTCGC
. : . : . : . : . : . :
JMSF045J05- TGCTCGCTTCACTCCGCCGACGGTGCCCTCCTATTGTCGACAGATTAAGAAAGCAGAGTT
____________________________________________________________
consensus TGCTCGCTTCACTCCGCCGACGGTGCCCTCCTATTGTCGACAGATTAAGAAAGCAGAGTT
. : . : . : . : . : . :
JMSF045J05- TCCTGATGTGCATCGCCCCTAAAACTATAAGAATTGCGGCAATTGCCCAGTGGCTGCCCC
____________________________________________________________
consensus TCCTGATGTGCATCGCCCCTAAAACTATAAGAATTGCGGCAATTGCCCAGTGGCTGCCCC
. : . : . : . : . : . :
JMSF045J05- TCTTCAACCCCTTCCTCCTCCCTTCCCCAGGGGTGATTAGGAAGTTTGGGTTTGTGAGAT
____________________________________________________________
consensus TCTTCAACCCCTTCCTCCTCCCTTCCCCAGGGGTGATTAGGAAGTTTGGGTTTGTGAGAT
. : . : . : . : . : . :
JMSF045J05- TGGGGCAGCGCAAGAGGAGCTTTATTGGGGTTAGTGTGAAAACCAAGCTGGAGTTGAGAA
rJMSF045J05+ GGGGTTAGTGTGAAAACCAAGCTGGAGTTGAGAA
____________________________________________________________
consensus TGGGGCAGCGCAAGAGGAGCTTTATTGGGGTTAGTGTGAAAACCAAGCTGGAGTTGAGAA
. : . : . : . : . : . :
JMSF045J05- TGGAGATTGATAGGATGGGAGTGGTGCAACCAGCAACAGAGGATTATGCTGAAGATGCAA
rJMSF045J05+ TGGAGATTGATAGGATGGGAGTGGTGCAACCAGCAACAGAGGATTATGCTGAAGATGCAA
____________________________________________________________
consensus TGGAGATTGATAGGATGGGAGTGGTGCAACCAGCAACAGAGGATTATGCTGAAGATGCAA
. : . : . : . : . : . :
JMSF045J05- TTAAAGCTATCAAGTCTGGGAATGTTATTGCTGTCCCCACTGACACGCTCTATGGCTTTG
rJMSF045J05+ TTAAAGCTATCAAGTCTGGGAATGTTATTGCTGTCCCCACTGACACGCTCTATGGCTTTG
rJMSF021K18+ GTTATTGCTGTCCCCACCGACACGCTTTATGGCTTTG
rJMSF022D14+ AGCTATCCAGTCTGGGAATGTTATTGCTGTCCCCACCGACACGCTCTATGGCTTTG
rJMSF008F11+ G
____________________________________________________________
consensus TTAAAGCTATCAAGTCTGGGAATGTTATTGCTGTCCCCACTGACACGCTCTATGGCTTTG
. : . : . : . : . : . :
JMSF045J05- CTTGTGACGCTTGTTCTGCTGAGGCAGTTAATCGTATATATGATATCAAAGGCCGTAAAT
rJMSF045J05+ CTTGTGACGCTTGTTCTGCTGAGGCAGTTAATCGTATATATGATATCAAAGGCCGTAAAT
rJMSF021K18+ CTTGTGACGCTTGTTCTGCTGAGGCCGTTAACCGTATATATGATATCAAAGGTCGTAAAT
rJMSF022D14+ CTTGTGACGCTTGTTCTGCTGAGGCCGTTAACCGTATATATGATATCAAAGGTCGTAAAT
rJMFF009G21+ TAACCGTATATATGATATCAAAGGTCGTAAAT
rJMSF008F11+ CTTGTGACGCTTGTTCTGCTGAGGCCGTTAACCGTATATATGATATCAAAGGTCGTAAAT
rJMSF047H02+ TGTGACGCTTGTTCTGCTGAGGCCGTTAACCGTATATATGATATCAAAGGTCGTAAAT
____________________________________________________________
consensus CTTGTGACGCTTGTTCTGCTGAGGCCGTTAACCGTATATATGATATCAAAGGTCGTAAAT
. : . : . : . : . : . :
JMSF045J05- ATACAAATCCCCTGGCAATTTGTGTTGGGGATGTTCAAGACATACAAAAATATGCCATCA
rJMSF045J05+ ATACAAATCCCCTGGCAATTTGTGTTGGGGATGTTCAAGACATACAAAAATATGCCATCA
rJMSF021K18+ ATACAAATCCCCTGGCAATTTGTGTTGGTGATGTTGAAGACATACAAAAATACGCCATCA
rJMSF022D14+ ATACAAATCCCCTGGCAATTTGTGTTGGTGATGTTGAAGACATACAAAAATACGCCATCA
rJMFF009G21+ ATACAAATCCCCTGGCAATTTGTGTTGGTGATGTTGAAGACATACAAAAATACGCCATCA
rJMSF008F11+ ATACAAATCCCCTGGCAATTTGTGTTGGTGATGTTGAAGACATACAAAAATACGCCATCA
rJMSF047H02+ ATACAAATCCCCTGGCAATTTGTGTTGGTGATGTNGAAGACATACANAAATACGCCATCA
____________________________________________________________
consensus ATACAAATCCCCTGGCAATTTGTGTTGGTGATGTTGAAGACATACAAAAATACGCCATCA
. : . : . : . : . : . :
JMSF045J05- GTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGC
rJMSF045J05+ GTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGC
rJMSF021K18+ CTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGC
rJMSF022D14+ CTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGC
rJMFF009G21+ CTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGC
rJMSF008F11+ CTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGC
rJMSF047H02+ CTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGN
____________________________________________________________
consensus CTGATCATTTACCTCATGGCTTGCTTGATTGTCTCCTTCCTGGTCCTGTAACTGTCGTGC
. : . : . : . : . : . :
JMSF045J05- TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCTGGACTTG
rJMSF045J05+ TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCTGGACTTGAGAGCATAG
rJMSF021K18+ TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCCGGACTTGAGAGCATAG
rJMSF022D14+ TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCCGGACTTGAGAGCATAG
rJMFF009G21+ TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCCGGACTTGAGAGCATAG
rJMSF008F11+ TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCCGGACTTGAGAGCATAG
rJMSF047H02+ TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCCGGACTTGAGAGCATAG
____________________________________________________________
consensus TAAGACGAGGTGAGTCAAGTATCCTTGAGAAGTCTTTAAACCCCGGACTTGAGAGCATAG
. : . : . : . : . : . :
rJMSF045J05+ GGGTTCGAGTGCCCGATAATACATTTATTAGGGTTATTGCCCGTTGTTCTGGAAGTGCAC
rJMSF021K18+ GGGTTCGAGTGCCCGATAATACATTTATTAGAGTTATTGCCCGGCATTCTGGAAGTGCAC
rJMSF022D14+ GGGTTCGAGTGCCCGATAATACATTTATTAGAGTTATTGCCCGGCATTCTGGAAGTGCAC
rJMFF009G21+ GGGTTCGAGTGCCCGATAATACATTTATTAGAGTTATTGCCCGGCATTCTGGAAGTGCAC
rJMSF008F11+ GGGTTCGAGTGCCCGATAATACATTTATTAGAGTTATTGCCCGGCATTCTGGAAGTGCAC
rJMSF047H02+ GGGTTCGAGTGCCCGATAATACATTTATTAGAGTTATTGCCCGGCATTCTGGAAGTGCAC
____________________________________________________________
consensus GGGTTCGAGTGCCCGATAATACATTTATTAGAGTTATTGCCCGGCATTCTGGAAGTGCAC
. : . : . : . : . : . :
rJMSF045J05+ TTGCACTTACCAGTGCAAACCTAAGCGGACAGCCCAGTAGCATCAACATTAGAGATTTTG
rJMSF021K18+ TTGCACTTACCAGTGCAAACCTTAGCGGACAGCCCAGTAGCATCAACATCAGAGATTTTG
rJMSF022D14+ TTGCACTTACCAGTGCAAACCTTAGCGGACAGCCCAGTAGCATCAACATCAGAGATTTTG
rJMFF009G21+ TTGCACTTACCAGTGCAAACCTTAGCGGACAGCCCAGTAGCATCAACATCAGAGATTTTG
rJMSF008F11+ TTGCACTTACCAGTGCAAACCTTAGCGGACAGCCCAGTAGCATCAACATCAGAGATTTTG
rJMSF047H02+ TTGCACTTACCAGTGCAAACCTTAGCGGACAGCCCAGTAGCATCAACATCAGAGATTTTG
____________________________________________________________
consensus TTGCACTTACCAGTGCAAACCTTAGCGGACAGCCCAGTAGCATCAACATCAGAGATTTTG
. : . : . : . : . : . :
rJMSF045J05+ AGAACCTATGGGGCCACTGTGCTTACATCTATGATGGTGGTGTACTTCCAGCTGGGCGTG
rJMSF021K18+ AGAACCTCTGGAGCCACTGTGCCTACATCTATGATGGTGGTGTACTTCCAGCTGGGCGAG
rJMSF022D14+ AGAACCTCTGGAGCCACTGTGCCTACATCTATGATGGTGGTGTACTTCCAGCTGGGCGAG
rJMFF009G21+ AGAACCTCTGGAGCCACTGTGCCTACATCTATGATGGTGGTGTACTTCCAGCTGGGCGAG
rJMSF008F11+ AGAACCTCTGGAGCCACTGTGCCTACATCTATGATGGTGGTGTACTTCCAGCTGGGCGAG
rJMSF047H02+ AGAACCTCTGGAGCCACTGTGCCTACATCTATGATGGTGGTGTACTTCCAGCTGGGCGAG
____________________________________________________________
consensus AGAACCTCTGGAGCCACTGTGCCTACATCTATGATGGTGGTGTACTTCCAGCTGGGCGAG
. : . : . : . : . : . :
rJMSF045J05+ CAGGATCAACAGTGGTGGATCTCACTAAGCAAGGAAAGTACAAGATCTTAAGACCTGGGA
rJMSF021K18+ CAGGATCAACGGTGGTGGATCTCACTAAGCAAGGAAAGTACAAGATCTTAAGACCTGGGA
rJMSF022D14+ CAGGATCAACGGTGGTGGATCTCACTAAGCAAGGAAAGTACAAGATCTTAAGACCTGGGA
rJMFF009G21+ CAGGATCAACGGTGGTGGATCTCACTAAGCAAGGAAAGTACAAGATCTTAAGACCTGGGA
rJMSF008F11+ CAGGATCAACGGTGGTGGATCTCACTAAGCAAGGAAAGTACAAGATCTTAAGACCTGGGA
rJMSF047H02+ CAGGATCAACGGTGGTGGATCTCACTAAGCAAGGAAAGTACAAGATCTTAAGACCTGGGA
____________________________________________________________
consensus CAGGATCAACGGTGGTGGATCTCACTAAGCAAGGAAAGTACAAGATCTTAAGACCTGGGA
. : . : . : . : . : . :
rJMSF045J05+ GTGCGGAGGAAGAGACCGTTGCAATCCTCCAAAAACACTCTTTGGTAGAAGATGGAAGTG
rJMSF021K18+ GTGCCGAGGAAGAGACTGTTGCCATCCTCCAAAAACACTCTTTGTTAGACGATGGAAGTG
rJMSF022D14+ GTGCCGAGGAAGAGACTGTTGCCATCCTCCAAAAACACTCTTTGTTAGACGATGGAAGTG
rJMFF009G21+ GTGCCGAGGAAGAGACTGTTGCCATCCTCCAAAAACACTCTTTGTTAGACGATGGAAGTG
rJMSF008F11+ GTGCCGAGGAAGAGACTGTTGCCATCCTCCAAAAACACTCTTTGTTAGACGATGGAAGTG
rJMSF047H02+ GTGCCGAGGAAGAGACTGTTGCCATCCTCCAAAAACACTCTTTGNTAGACGATGGAAGTG
____________________________________________________________
consensus GTGCCGAGGAAGAGACTGTTGCCATCCTCCAAAAACACTCTTTGTTAGACGATGGAAGTG
. : . : . : . : . : . :
rJMSF045J05+ GTGTGCGGTGAG
rJMSF021K18+ GAGTGCAGTGAGTTTATTCGTGTGTTGATTGAGATGCATAAAGGGACGCTGATGTGCCTG
rJMSF022D14+ GAGTGCAGTGAGTTTATTCGTGTGTTGATTGAGATGCATAAAGGGACGCTGATGTGCCTG
rJMFF009G21+ GAGTGCAGTGAGTTTATTCGTGTGTTGATTGAGATGCATAAAGGGACGCTGATGTGCCTG
rJMSF008F11+ GAGTGCAGTGAGTTTATTCGTGTGTTGATTGAGATGCATAAAGGGACGCTGATGTGCCTG
rJMSF047H02+ GAGTGCAGTGAGTTTATTCGTGTGTTGATTGAGATGCATAAAGGGACGCTGATGTGCCTG
____________________________________________________________
consensus GAGTGCAGTGAGTTTATTCGTGTGTTGATTGAGATGCATAAAGGGACGCTGATGTGCCTG
. : . : . : . : . : . :
rJMSF021K18+ ATACAAGATTCATGTGTAAACCTGAGATTTAGGATGATGGATGAGAGCATGGGTGAATCT
rJMSF022D14+ ATACAAGATTCATGTGTAAACCTGAGATTTAGGATGATGGATGAGAGCATGGGTGAATCT
rJMFF009G21+ ATACAAGATTCATGTGTAAACCTGAGATTTAGGATGATGGATGAGAGCATGGGTGAATCT
rJMSF008F11+ ATACAAGATTCATGTGTAAACCTGAGATTTAGGATGATGGATGAGAGCATGGGTGAATCT
rJMSF047H02+ ATACAAGATTCATGTGTAAACCTGAGATTTAGGATGATGGATGAGAGCATGGGTGAATCT
____________________________________________________________
consensus ATACAAGATTCATGTGTAAACCTGAGATTTAGGATGATGGATGAGAGCATGGGTGAATCT
. : . : . : . : . : . :
rJMSF021K18+ GACAATGTTGCTGATCATCTAGTTTCTTGTACACTCATCATTGTGAAATCA
rJMSF022D14+ GACAATGTTGCTGATCATCTAGTTTCTTGTACACTCATCATTGTGAAATCATTCT
rJMFF009G21+ GACAATGTTGCTGATCATCTAGTTTCTTGTACACTCATCATTGTGAAATCATTCTTTTTT
rJMSF008F11+ GACAATGTTGCTGATCATCTAGTTTCTTGTACACTCATCATTGTGAAATCATTCTTTTTT
rJMSF047H02+ GACAATGTTGCTGATCATCTAGTTTCTTGTNCACTCATCATTGTGAAATCATTCTTTTTT
____________________________________________________________
consensus GACAATGTTGCTGATCATCTAGTTTCTTGTACACTCATCATTGTGAAATCATTCTTTTTT
. : . : . : . : . : . :
rJMFF009G21+ GGTACGTCTAATATAAGGGAAG
rJMSF008F11+ GGTACGTCTAATATAAGGGAAG
rJMSF047H02+ GGTACGTCTAATATAAGGGAAGTGAAGGATCTGAACTGAACTTTACTGCATTGTCGAATG
____________________________________________________________
consensus GGTACGTCTAATATAAGGGAAGTGAAGGATCTGAACTGAACTTTACTGCATTGTCGAATG