Contig 004390:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMSF046N04-                                                                   GAAG
                      ____________________________________________________________
consensus                                                                     GAAG
 
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JMFF025D12-                     ATTGCGCCCTTTGCCATTTATCATCATCCTCTCCACTTTCTTTCTCCAGG
JMSF046N04-           ATTTCATTACATTGCGCCCTTTGCCATTTATCATCATCCTCTCCACTTTCTTTCTCCAGG
                      ____________________________________________________________
consensus             ATTTCATTACATTGCGCCCTTTGCCATTTATCATCATCCTCTCCACTTTCTTTCTCCAGG
 
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JMFF025D12-           CATTTTCGATTTTTTTCCCAATTCTTGATTTTCCGACGATGAGAGACTTCGCTTCTTGTT
JMSF046N04-           CATTTTCGATTTTTTTCCCAATTCTTGATTTTCCGACGATGAGAGACTTCGCTTCTTGTT
                      ____________________________________________________________
consensus             CATTTTCGATTTTTTTCCCAATTCTTGATTTTCCGACGATGAGAGACTTCGCTTCTTGTT
 
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JMFF025D12-           TTAACGAATACGCAGTCCATGTTTCCGATTCATACGCCTGCGCCAGCCACGCCGGCAATT
JMSF046N04-           TTAACGAATACGCAGTCCATGTTTCCGATTCATACGCCTGCGCCAGCCACGCCGGCAATT
                      ____________________________________________________________
consensus             TTAACGAATACGCAGTCCATGTTTCCGATTCATACGCCTGCGCCAGCCACGCCGGCAATT
 
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JMFF025D12-           CTTGCATTTCGCCGGCGCTGACTCCCTCGGTGCAGAACACGGTGGTCTGCGTTTACAGAG
JMSF046N04-           CTTGCATTTCGCCGGCGCTGACTCCCTCGGTGCAGAACACGGTGGTCTGCGTTTACAGAG
                      ____________________________________________________________
consensus             CTTGCATTTCGCCGGCGCTGACTCCCTCGGTGCAGAACACGGTGGTCTGCGTTTACAGAG
 
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JMFF025D12-           CCGTTCTGTCCAGCCGGAGAAGCGTTCCGATCAGGGTTTCTTGGAGCAGAACCGCCGCGT
JMSF046N04-           CCGTTCTGTCCAGCCGGAGAAGCGTTCCGATCAGGGTTTCTTGGAGCANAACCGCCGCGT
                      ____________________________________________________________
consensus             CCGTTCTGTCCAGCCGGAGAAGCGTTCCGATCAGGGTTTCTTGGAGCAGAACCGCCGCGT
 
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JMFF025D12-           CTCAGGGCCTCACCATTAACTTCGGCGACGACCCGGCAACCGGCGCCGCCTTCAAGCTGA
JMSF046N04-           CTCAGGGCCTCACCATTAACTTCGGCGACGACCCGGCAACCGGCGCCGCCTTCAAGCTGA
                      ____________________________________________________________
consensus             CTCAGGGCCTCACCATTAACTTCGGCGACGACCCGGCAACCGGCGCCGCCTTCAAGCTGA
 
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JMFF025D12-           ACGGAAACGCGCGGTTATTCCGGAAGAAAAGGGGGAGCAAATCGTTCGAGTTCGGGAATT
JMSF046N04-           ACGGAAACGCGCGGTTATTCCGGAAGAAAAGGGGGAGCAAATCGTTCGAGTTCGGGAATT
                      ____________________________________________________________
consensus             ACGGAAACGCGCGGTTATTCCGGAAGAAAAGGGGGAGCAAATCGTTCGAGTTCGGGAATT
 
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JMFF025D12-           CCAAGGTCGAAGTGTTCTGGGATTTGTCCGCCGCCCGGTACTGCGCCGGCCCGGAGCCGA
JMSF046N04-           CCAAGGTCGAAGTGTTCTGGGATTTGNCCGCCGCCCGGTACTGCGCCGGCCCGGAGCCGA
rJMFF025D12+                                                             CGGAGCCGA
                      ____________________________________________________________
consensus             CCAAGGTCGAAGTGTTCTGGGATTTGTCCGCCGCCCGGTACTGCGCCGGCCCGGAGCCGA
 
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JMFF025D12-           TCGACGGGTTCTACGTCTTAGCCGCCATAGATTCCGAGCTGAGCCTGCTCCTCGGAGACA
JMSF046N04-           TCGACGGGTTCTACGTCTTAACCGCCATAGATTCCGAGCTGAGCCTGCTCCTCGGAGACA
rJMFF025D12+          TCGACGGGTTNTACGTTTTAGCCGCCATAGATTCCGAGCTGAGCCTGCTCCTCGGAGACA
                      ____________________________________________________________
consensus             TCGACGGGTTCTACGTCTTAGCCGCCATAGATTCCGAGCTGAGCCTGCTCCTCGGAGACA
 
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JMFF025D12-           TGGCGGAGGAAGCCTCCTGCCGGAAAATCAAACCCGCCGGCATTCACCCGGCGAAATGCT
JMSF046N04-           TGGCGGAGGAAGCCTCCTGCCGGAAAATCAAACCCGCCGGCATTCACCCGGCGAAATGCT
rJMFF025D12+          TGGCGGAGGAAGCCTCCTGCCGGAAAATCAAACCCGCCGGCATTCACCCGGCGAAATGCT
                      ____________________________________________________________
consensus             TGGCGGAGGAAGCCTCCTGCCGGAAAATCAAACCCGCCGGCATTCACCCGGCGAAATGCT
 
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JMFF025D12-           CGCTGATTTCCCGGCA                                            
JMSF046N04-           CGCTGATTTCCCGGCAAGAACATTTCTCCGGCAACGCCCTGTACTCCACCAAGGC     
rJMFF025D12+          CGCTGATTTCCCGGCAAGAACATTTCTCCGGCAACGCCCTGTACTCCACCAAGGCGCAAT
                      ____________________________________________________________
consensus             CGCTGATTTCCCGGCAAGAACATTTCTCCGGCAACGCCCTGTACTCCACCAAGGCGCAAT
 
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rJMFF025D12+          TCTCCGACACCGGGACGCCGCACGACGTCGTCGTCAGCTGCTACGGCGACAATAATGCGG
rJMSF046N04+                                                      GGCGACAATAATGCGG
                      ____________________________________________________________
consensus             TCTCCGACACCGGGACGCCGCACGACGTCGTCGTCAGCTGCTACGGCGACAATAATGCGG
 
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rJMFF025D12+          CGGCGGCGGCCGCGAATAGCAACAAGCACCCTGTCCTGTCAGTATCAATCGACAAAAAAA
rJMSF046N04+          CGGCGGCGGCCGCGAATAGCAACAAGCACCCTGTCCTGTCAGTATCAATCGACAAAAAAA
                      ____________________________________________________________
consensus             CGGCGGCGGCCGCGAATAGCAACAAGCACCCTGTCCTGTCAGTATCAATCGACAAAAAAA
 
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rJMFF025D12+          TGGTGATTCGCGTGAAGCGGCTTCAATGGAACTTCCGGGGAAACCACACAATTTTCGTCG
rJMSF046N04+          TGGTGATTCGCGTGAAGCGGCTTCAATGGAACTTCCGGGGAAACCACACAATTTTCGTCG
                      ____________________________________________________________
consensus             TGGTGATTCGCGTGAAGCGGCTTCAATGGAACTTCCGGGGAAACCACACAATTTTCGTCG
 
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rJMFF025D12+          ACGGTTTGCTCGTCGATCTGATGTGGGACGTTCACGACTGGTTCTACAATAATTCCGGGC
rJMSF046N04+          ACGGTTTGCTCGTCGATCTGATGTGGGACGTTCACGACTGGTTCTACAATAATTCCGGGC
                      ____________________________________________________________
consensus             ACGGTTTGCTCGTCGATCTGATGTGGGACGTTCACGACTGGTTCTACAATAATTCCGGGC
 
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rJMFF025D12+          CGGGAATTGCAGTGTTCATGTTCAGAACAAGAAGCGGAATGGACAGCAGGTTGTGGCTGG
rJMSF046N04+          CGGGAATTGCAGTGTTCATGTTCAGAACAAGAAGCGGAATGGACAGCAGGTTGTGGCTGG
                      ____________________________________________________________
consensus             CGGGAATTGCAGTGTTCATGTTCAGAACAAGAAGCGGAATGGACAGCAGGTTGTGGCTGG
 
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rJMFF025D12+          AGGAGAAGTTGCAGAGCAAGAAAGATGAAGACAAAGTTGACTTCTCATTCTTGATCTATG
rJMSF046N04+          AGGAGAAGTTGCAGAGCAAGAAAGATGAAGACAAAGTTGACTTCTCATTCTTGATCTATG
                      ____________________________________________________________
consensus             AGGAGAAGTTGCAGAGCAAGAAAGATGAAGACAAAGTTGACTTCTCATTCTTGATCTATG
 
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rJMFF025D12+          CCAATAGAAGCACATAACAAATACAATTTTTTTTCAATCTTTGAAATTTTTTGTTACCAC
rJMSF046N04+          CCAATAGAAGCACATAACAAATACAATTTTTTTTCAATCTTTGAAATTTTTTGTTACCAC
                      ____________________________________________________________
consensus             CCAATAGAAGCACATAACAAATACAATTTTTTTTCAATCTTTGAAATTTTTTGTTACCAC
 
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rJMFF025D12+          GACGAGGAAACCAGCAGCCACTATCCCAGATTCTCGGGTGTGGAAGACTACTCGGACTAA
rJMSF046N04+          GACGAGGAAACCAGCAGCCACTATCCCAGATTCTCGGGTGTGGAAGACTACTCGGACTAA
                      ____________________________________________________________
consensus             GACGAGGAAACCAGCAGCCACTATCCCAGATTCTCGGGTGTGGAAGACTACTCGGACTAA
 
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rJMFF025D12+          ACTTGTGGTTACCACGTCAATAGTCTGACCAGATTGGCTGGGTTACTCTAGTCTTTGAAT
rJMSF046N04+          ACTTGTGGTTACCACGTCAATAGTCTGACCAGATTGGCTGGGTTACTCTAGTCTTTGAAT
                      ____________________________________________________________
consensus             ACTTGTGGTTACCACGTCAATAGTCTGACCAGATTGGCTGGGTTACTCTAGTCTTTGAAT
 
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rJMFF025D12+          TTTTAAAAATTAGAG                                             
rJMSF046N04+          TTTTAAAAATTAGAGTTAAACTCGTAATCTTGTGGTTATCACGTCAACAGTCTGACCAGA
                      ____________________________________________________________
consensus             TTTTAAAAATTAGAGTTAAACTCGTAATCTTGTGGTTATCACGTCAACAGTCTGACCAGA
 
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rJMSF046N04+          TTGGCCGGGTTACCCTAGTCTTTGAATTTTTTGTTGCCTAACTTTAATTTCTGGGCTCAT
                      ____________________________________________________________
consensus             TTGGCCGGGTTACCCTAGTCTTTGAATTTTTTGTTGCCTAACTTTAATTTCTGGGCTCAT
 
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rJMSF046N04+          CTTCTCTTTTTACATGTTGATTTTAGGATTTTAGCAGTGTTCTTCATGAAAGAAAGGGGG
                      ____________________________________________________________
consensus             CTTCTCTTTTTACATGTTGATTTTAGGATTTTAGCAGTGTTCTTCATGAAAGAAAGGGGG
 
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rJMSF046N04+          AATTTTTACTGTTATCTGGGATTCTTGATCTTGATGAATGAAAGTCTGCAAATGTAAATG
                      ____________________________________________________________
consensus             AATTTTTACTGTTATCTGGGATTCTTGATCTTGATGAATGAAAGTCTGCAAATGTAAATG