Contig 004386:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF018I17Sequence481010566 (3)ref|XP_004242883.1|187PREDICTED: uncharacterized protein LOC101254006 [Solanum lycopersicum] ref|XP_01813004386 (2)ref|XP_009628075.1|3e-93PREDICTED: uncharacterized protein LOC104118522 isoform X3 [Nicotiana tomentosi
JMSF045I15Sequence802010566 (3)ref|XP_009628073.1|6e-117PREDICTED: uncharacterized protein LOC104118522 isoform X1 [Nicotiana tomentosi709004386 (2)ref|XP_009628075.1|8e-75PREDICTED: uncharacterized protein LOC104118522 isoform X3 [Nicotiana tomentosi

Alignment

This contig is upended


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rJMSF018I17+                                  CTGGATGCTGCTAGGGCGCAACTTAGTGCGAACAGA
                      ____________________________________________________________
consensus                                     CTGGATGCTGCTAGGGCGCAACTTAGTGCGAACAGA
 
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rJMSF018I17+          GAGAGTATTTTCGACAAAGCTATAGAATTAGCTATGGGAGCAAAAGACGAGATGAGTAGA
                      ____________________________________________________________
consensus             GAGAGTATTTTCGACAAAGCTATAGAATTAGCTATGGGAGCAAAAGACGAGATGAGTAGA
 
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rJMSF018I17+          ATTCGTGGGATCTCGGTCCTTGACTTCTCAAGGTT-CCCCAACACTCCTTTTAGAGATCC
rJMSF045I15+                     CTCGGTCCTTGACTTCTCAAGGTTCCCCCAACACTCCTTTTAGAGATCC
                      ____________________________________________________________
consensus             ATTCGTGGGATCTCGGTCCTTGACTTCTCAAGGTTCCCCCAACACTCCTTTTAGAGATCC
 
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rJMSF018I17+          CTTGCGAATCACTGTTGGGGTATGGCAGCTTGGGCTCTCTGGTTTTGAAGCAGATGATAT
rJMSF045I15+          CTTGCGAATCACTGTTGGGGTATGGCAGCTTGGGCTCTCTGGTTTTGAAGCAGATGATAT
                      ____________________________________________________________
consensus             CTTGCGAATCACTGTTGGGGTATGGCAGCTTGGGCTCTCTGGTTTTGAAGCAGATGATAT
 
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rJMSF018I17+          TTTATCGGATGGGTTTGGAGTTGTTTCTGAACTAGTTGGGACCAAATCCATTACATTTGC
rJMSF045I15+          TTTATCGGATGGGTTTGGAGTTGTTTCTGAACTAGTTGGGACCAAATCCATTACATTTGC
                      ____________________________________________________________
consensus             TTTATCGGATGGGTTTGGAGTTGTTTCTGAACTAGTTGGGACCAAATCCATTACATTTGC
 
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rJMSF018I17+          GTTCAATCTTGGAACTCAAAGAGATCATGTTGGAAGACTTGTGTCTGGATTAAAACATCT
rJMSF045I15+          GTTCAATCTTGGAACTCAAAGAGATCATGTTGGAAGACTTGTGTCTGGATTAAAACATCT
                      ____________________________________________________________
consensus             GTTCAATCTTGGAACTCAAAGAGATCATGTTGGAAGACTTGTGTCTGGATTAAAACATCT
 
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rJMSF018I17+          ATCTGCAACTTCACCTAAACTAACTGCAGATACAGTGAACAATGAAGAACAGTTTGCACC
rJMSF045I15+          ATCTGCAACTTCACCTAAACTAACTGCAGATACAGTGAACAATGAAGAACAGTTTGCACC
                      ____________________________________________________________
consensus             ATCTGCAACTTCACCTAAACTAACTGCAGATACAGTGAACAATGAAGAACAGTTTGCACC
 
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rJMSF018I17+          ATTTGATGATATTCACATTAGCATGAGCCCAAGAGAGGCGTTCTTTGCCCCAAAAAGGAG
rJMSF045I15+          ATTTGATGATATTCACATTAGCATGAGCCCAAGAGAGGCGTTCTTTGCCCCAAAAAGGAG
                      ____________________________________________________________
consensus             ATTTGATGATATTCACATTAGCATGAGCCCAAGAGAGGCGTTCTTTGCCCCAAAAAGGAG
 
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rJMSF018I17+          AGTTAGCATCCAAGAAAGTGTGGGGAGAATTTGTGGAGAGCTCGTATGTCCTTATCCACC
rJMSF045I15+          AGTTAGCATCCAAGAAAGTGTGGGGAGAATTTGTGGAGAGCTCGTATGTCCTTATCCACC
                      ____________________________________________________________
consensus             AGTTAGCATCCAAGAAAGTGTGGGGAGAATTTGTGGAGAGCTCGTATGTCCTTATCCACC
 
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rJMSF018I17+          CGGGATTCCTGTGCTCATTCCTGGTGAGGTCATCACTAAAACCGCGTTGAACTATCTAAT
rJMSF045I15+          CGGGATTCCTGTGCTCATTCCTGGTGAGGTCATCACTAAAACCGCGTTGAACTATCTAAT
                      ____________________________________________________________
consensus             CGGGATTCCTGTGCTCATTCCTGGTGAGGTCATCACTAAAACCGCGTTGAACTATCTAAT
 
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rJMSF018I17+          GCAGATCAAAGGCAAGGGTGGTGTTATCAGTGGAGCAGCCGATCACTCGCTCTCATCCCT
rJMSF045I15+          GCAGATCAAAGGCAAGGGTGGTGTTATCAGTGGAGCAGCCGATCACTCGCTCTCATCCCT
                      ____________________________________________________________
consensus             GCAGATCAAAGGCAAGGGTGGTGTTATCAGTGGAGCAGCCGATCACTCGCTCTCATCCCT
 
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rJMSF018I17+          CATTATATGTGATTAAGGACTCGTCTCAGATTTGCATATATTTGTGAGAACTAGCCATAT
rJMSF045I15+          CATTATATGTGATTAAGGACTCGTCTCAGATTTGCATATATTTGTGAGAACTAGCCATAT
                      ____________________________________________________________
consensus             CATTATATGTGATTAAGGACTCGTCTCAGATTTGCATATATTTGTGAGAACTAGCCATAT
 
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rJMSF018I17+          CCATGCAAGCTCAAATCTAAAAGCTTGATTGGAATTCAGATGTATAGAATTGAAAGCTTT
rJMSF045I15+          CCATGCAAGCTCAAATCTAAAAGCTTGATTGGAATTCAGATGTATAGAATTGAAAGCTTT
                      ____________________________________________________________
consensus             CCATGCAAGCTCAAATCTAAAAGCTTGATTGGAATTCAGATGTATAGAATTGAAAGCTTT
 
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rJMSF018I17+          CATGTATTGTCTAGAGAGATCAGAGGATAAGTTCAACTGTATTCAGTCCATGAAAGCT  
rJMSF045I15+          CATGTATTGTCTAGAGAGATCAGAGGATAAGTTCAACTGTATTCAGTCCATGAAAGCTCA
                      ____________________________________________________________
consensus             CATGTATTGTCTAGAGAGATCAGAGGATAAGTTCAACTGTATTCAGTCCATGAAAGCTCA