Contig 004383:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF003B24Sequence257013526 (2)ref|XP_009624625.1|5e-12PREDICTED: probable lysine--tRNA ligase, cytoplasmic [Nicotiana tomentosiformis741004383 (2)ref|XP_006445583.1|1e-80hypothetical protein CICLE_v10014735mg [Citrus clementina] ref|XP_006488943.1| P
JMSF045D19Sequence737013526 (2)ref|XP_009624625.1|1e-119PREDICTED: probable lysine--tRNA ligase, cytoplasmic [Nicotiana tomentosiformis816004383 (2)ref|XP_008222344.1|5e-85PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Prunus mume]

Alignment

This contig is upended


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rJMSF045D19+                                  TGATATTTGTCATGACAATCAACAGAAAAGCTATAT
                      ____________________________________________________________
consensus                                     TGATATTTGTCATGACAATCAACAGAAAAGCTATAT
 
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rJMSF003B24+                                    TTGCTTAATGAGGTCTTTGAGATGGTAGTGGAAC
rJMSF045D19+          TGAAAGCATCCCGATCTGTTGGCCATTTGCTTAATGAGGTCTTTGAGATGGTAGTGGAAC
                      ____________________________________________________________
consensus             TGAAAGCATCCCGATCTGTTGGCCATTTGCTTAATGAGGTCTTTGAGATGGTAGTGGAAC
 
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rJMSF003B24+          CAAAGCTTCTTCAGCCCACATTTGTTTTGGACTACCCAATTGAAGTATCTCCACTTGCCA
rJMSF045D19+          CAAAGCTTCTTCAGCCCACATTTGTTTTGGACTACCCAATTGAAGTATCTCCACTTGCCA
                      ____________________________________________________________
consensus             CAAAGCTTCTTCAGCCCACATTTGTTTTGGACTACCCAATTGAAGTATCTCCACTTGCCA
 
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rJMSF003B24+          AACCCCACAGAAGATATTCAGGGTTAACAGAGAGATTTGAACTTTTCATTTGTGGTCGTG
rJMSF045D19+          AACCCCACAGAAGATATTCAGGGTTAACAGAGAGATTTGAACTTTTCATTTGTGGTCGTG
                      ____________________________________________________________
consensus             AACCCCACAGAAGATATTCAGGGTTAACAGAGAGATTTGAACTTTTCATTTGTGGTCGTG
 
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rJMSF003B24+          AGCTGGCAAACGCCTTCTCTGAATTAACTGATCCTCTCGACCAGAGAGGACGATTGGAAG
rJMSF045D19+          AGCTGGCAAACGCCTTCTCTGAATTAACTGATCCTCTCGACCAGAGAGGACGATTGGAAG
                      ____________________________________________________________
consensus             AGCTGGCAAACGCCTTCTCTGAATTAACTGATCCTCTCGACCAGAGAGGACGATTGGAAG
 
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rJMSF003B24+          AGCAAGTGAGGCAGCATAATGAGAAAAGAGAGGCTGCAGTTTCAGAAGCAGCTGTTGAGG
rJMSF045D19+          AGCAAGTGAGGCAGCATAATGAGAAAAGAGAGGCTGCAGTTTCAGAAGCAGCTGTTGAAG
                      ____________________________________________________________
consensus             AGCAAGTGAGGCAGCATAATGAGAAAAGAGAGGCTGCAGTTTCAGAAGCAGCTGTTGAGG
 
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rJMSF003B24+          GAAAGGATGACAAAAACGATGACGATGACGACGACTCCTATGAAGTGACTCTTGATGAAG
rJMSF045D19+          GAAAGGATGACAAAAACGATGACGATGACGACGACTCCTATGAAGTGACTCTTGATGAAG
                      ____________________________________________________________
consensus             GAAAGGATGACAAAAACGATGACGATGACGACGACTCCTATGAAGTGACTCTTGATGAAG
 
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rJMSF003B24+          ACTTTCTCACGGCTCTAGAATACGGGATGCCCCCTGCTTCTGGAATGGGACTTGGCATCG
rJMSF045D19+          ACTTTCTCACGGCTCTAGAATACGGGATGCCCCCTGCTTCTGGAATGGGACTTGGCATCG
                      ____________________________________________________________
consensus             ACTTTCTCACGGCTCTAGAATACGGGATGCCCCCTGCTTCTGGAATGGGACTTGGCATCG
 
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rJMSF003B24+          ACAGGCTAGTAATGCTTTTAACGAACTCTGCCAGCATCCGCGATGTCATTGCTTTCCCAG
rJMSF045D19+          ACAGGCTAGTAATGCTTTTAACGAACTCTGCCAGCATCCGCGATGTCATTGCTTTCCCAG
                      ____________________________________________________________
consensus             ACAGGCTAGTAATGCTTTTAACGAACTCTGCCAGCATCCGCGATGTCATTGCTTTCCCAG
 
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rJMSF003B24+          TGCTCAAGGCTCAACCGAAACTTACCGAGTAGCAGCGGATAGGTAGGAATTCTGTTTCCA
rJMSF045D19+          TGCTCAAGGCTCAACCGAAACTTACCGAGTAGCAGCGGATAGGTAGGAATTCTGTTTCCA
                      ____________________________________________________________
consensus             TGCTCAAGGCTCAACCGAAACTTACCGAGTAGCAGCGGATAGGTAGGAATTCTGTTTCCA
 
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rJMSF003B24+          TAAATTGGGTAGTGATGCAATCAATGCACATGGGTTCAACAAATTCTTCCATTTTTCTTC
rJMSF045D19+          TAAATTGGGTAGTGATGCAATCAATGCACATGGGTTCAACAAATTCTTCCATTTTTCTTC
                      ____________________________________________________________
consensus             TAAATTGGGTAGTGATGCAATCAATGCACATGGGTTCAACAAATTCTTCCATTTTTCTTC
 
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rJMSF003B24+          ATGGGATCTTATGGGTTGTGTCACCCACCCATGTTCTATTCTTGCTGATTTTAAGTCAAT
rJMSF045D19+          ATGGGATCTTATGGGTTGTGTCACCCACCCATGTTCTATTCTTGCTGATTTTAAGTCAAT
                      ____________________________________________________________
consensus             ATGGGATCTTATGGGTTGTGTCACCCACCCATGTTCTATTCTTGCTGATTTTAAGTCAAT
 
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rJMSF003B24+          TTTGGACAATGATCCCCGTCCCCACTATACTACCATTCTTGTCAAACGTTTTTGTTTTTT
rJMSF045D19+          TTTGGACAATGATCCCCGTCCCCACTATACTACCATTCTTGTCAAACGTTTTTGTTTTTT
                      ____________________________________________________________
consensus             TTTGGACAATGATCCCCGTCCCCACTATACTACCATTCTTGTCAAACGTTTTTGTTTTTT
 
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rJMSF003B24+          GAAGAGACAGCTTAAGTTGTTGGAAGACTTTGATGAAATACCAGAGT             
rJMSF045D19+          GAAGAGACAGCTTAAGTTGTTGGAAGACTTTGATGAAATACCAGAGTAGATAAAGTGTGT
                      ____________________________________________________________
consensus             GAAGAGACAGCTTAAGTTGTTGGAAGACTTTGATGAAATACCAGAGTAGATAAAGTGTGT