Contig 004378:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044K06-                              GAGATATACACAACAAAATCTCTTTTCTGAACTTTTTTGA
                      ____________________________________________________________
consensus                                 GAGATATACACAACAAAATCTCTTTTCTGAACTTTTTTGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF044K06-          GGTCTGATTCATAAAGAAACAGGATAAACTAACATGCATGCATGCTTTTGGCTTTAATCT
                      ____________________________________________________________
consensus             GGTCTGATTCATAAAGAAACAGGATAAACTAACATGCATGCATGCTTTTGGCTTTAATCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044K06+                                      CTTCAAGACAGTGCCGTTCTGTCCTAAATCAGT
rJMSF044K06-          TTAGACAAATCTTTAGAATACGGTTTTCTTCAAGACAGTGCCGTTCTGTCCTAAATCAGT
                      ____________________________________________________________
consensus             TTAGACAAATCTTTAGAATACGGTTTTCTTCAAGACAGTGCCGTTCTGTCCTAAATCAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044K06+           TCCATTAACTGTCACATTGTATACATAAGCTTCATAATCCATCTTATGATGCTTTGTTTT
rJMSF044K06-          TCCATTAACTGTCACATTGTATACATAAGCTTCATAATCCATCTTATGATGCTTTGTTTT
                      ____________________________________________________________
consensus             TCCATTAACTGTCACATTGTATACATAAGCTTCATAATCCATCTTATGATGCTTTGTTTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044K06+           CCACTTGAATATCCTATACTGAACCGTCGTCTCCAAGCCAATCTTGAAACTTACATTTCC
rJMSF044K06-          CCACTTGAATATCCTATACTGAACCGTCGTCTCCAAGCCAATCTTGAAACTTACATTTCC
                      ____________________________________________________________
consensus             CCACTTGAATATCCTATACTGAACCGTCGTCTCCAAGCCAATCTTGAAACTTACATTTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044K06+           ACCTATAATCTGCTGCAAAAACTGCAGGTCAGCTAATTTCATTTCCACTGCCCTCGTAGT
rJMSF044K06-          ACCTATAATCTGCTGCAAAAACTGCAGGTCAGCTAATTTCATTTCCACTGCCCTCGTAGT
                      ____________________________________________________________
consensus             ACCTATAATCTGCTGCAAAAACTGCAGGTCAGCTAATTTCATTTCCACTGCCCTCGTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044K06+           ATCATTCTTGCACGGCTGATAGAAGCCCGGGGTGGAATTCTTTGCGACAACAATTCCATT
rJMSF044K06-          ATCATTCTTGCACGGCTGATAGAAGCCCGGGGTGGAATTCTTTGCGACAACAATTCCATT
                      ____________________________________________________________
consensus             ATCATTCTTGCACGGCTGATAGAAGCCCGGGGTGGAATTCTTTGCGACAACAATTCCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044K06+           GTGGTTCATAGTGAAGTAGATGTCGCTGTAGTATATGCTCATACCCTTGTTGGGATTCGA
rJMSF044K06-          GTGGTTCATAGTGAAGTAGATGTCGCTGTAGTATATGCTCATACCCTTGTTGGGATTCGA
                      ____________________________________________________________
consensus             GTGGTTCATAGTGAAGTAGATGTCGCTGTAGTATATGCTCATACCCTTGTTGGGATTCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044K06+           GATTTCGATGCCTAACCTGACAGAAGTAATGTTGTGATGATCTGTTGTAGAATTCTTGGT
rJMSF044K06-          GATTTCGATGCCTAACCTGACAGAAGTAATGTTGTGATGATCTGTTGTAGAATTCTTGGT
                      ____________________________________________________________
consensus             GATTTCGATGCCTAACCTGACAGAAGTAATGTTGTGATGATCTGTTGTAGAATTCTTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044K06+           ATCTGAAGGATGAACATGGAAAGCTGCGATGGTGAAAGTGGGAGAACTCGGGATTAGAGT
rJMSF044K06-          ATCTGAAGGATGAACATGGAAAGCTGCGATGGTGAAAGTGGGAGAACTCGGGATTAGAGT
                      ____________________________________________________________
consensus             ATCTGAAGGATGAACATGGAAAGCTGCGATGGTGAAAGTGGGAGAACTCGGGATTAGAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044K06+           ACGCCATATGACTAGAGAGACCAGAGTTAACACTGTTGCAACTTGAAAGTACCACCAATA
rJMSF044K06-          ACGCCATATGACTAGAGAGACCAGAGTTAACACTGTTGCAACTTGAAAGTACCACCAATA
                      ____________________________________________________________
consensus             ACGCCATATGACTAGAGAGACCAGAGTTAACACTGTTGCAACTTGAAAGTACCACCAATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044K06+           GATTTCAGATTTTTCTTTGTATTGTTTTCCAACTGCCATTTTTTGGTTTACAACTAACTT
rJMSF044K06-          GATTTCAGATTTTTCTTTGTATTGTTTTCCAACTGCCATTTTTTGGTTTACAACTAACTT
                      ____________________________________________________________
consensus             GATTTCAGATTTTTCTTTGTATTGTTTTCCAACTGCCATTTTTTGGTTTACAACTAACTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF044K06+           GTAGCTGCAGTTGGTATATATAAGGATGTTTCGAAAATATTGAGGTTTATGAACCAGGTC
rJMSF044K06-          GTAGCTGCAGTTGGTATATATAAGGATGTTTCGAAAATATTGAGGTTTATGAACCAGGTC
                      ____________________________________________________________
consensus             GTAGCTGCAGTTGGTATATATAAGGATGTTTCGAAAATATTGAGGTTTATGAACCAGGTC