Contig 004375:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF043O13Sequence698004375 (2)ref|XP_008236939.1|1e-117PREDICTED: chaperone protein dnaJ 10 [Prunus mume]660004375 (2)ref|XP_010645323.1|6e-69PREDICTED: chaperone protein dnaJ 10 [Vitis vinifera] emb|CBI37687.3| unnamed pr

Alignment

This contig is upended


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JMSF043O13-                                     GGGACAGGCGTCATCGAGATCCGGCCCATATTCA
                      ____________________________________________________________
consensus                                       GGGACAGGCGTCATCGAGATCCGGCCCATATTCA
 
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JMSF043O13-           ATCGCATTTGTAGAACTGCTAGCACTTAAGCCATGGTAAAGGACACAGAATACTATGAAA
                      ____________________________________________________________
consensus             ATCGCATTTGTAGAACTGCTAGCACTTAAGCCATGGTAAAGGACACAGAATACTATGAAA
 
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JMSF043O13-           TCTTGGGGGTCGGGGTGGATGCCACGCCCGCAGAAATTAAGAAAGCATACTATGTCAAGG
                      ____________________________________________________________
consensus             TCTTGGGGGTCGGGGTGGATGCCACGCCCGCAGAAATTAAGAAAGCATACTATGTCAAGG
 
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JMSF043O13-           CAAGGGTAGTACATCCAGATAAAAATCCCGGGGATCCACAAGCTGCTCATAAATTCCAGG
                      ____________________________________________________________
consensus             CAAGGGTAGTACATCCAGATAAAAATCCCGGGGATCCACAAGCTGCTCATAAATTCCAGG
 
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JMSF043O13-           TGCTTGGAGAGGCTTATCAGGTCCTGAGTGATCCACAGAAACGAGAAACTTATGACAAAC
                      ____________________________________________________________
consensus             TGCTTGGAGAGGCTTATCAGGTCCTGAGTGATCCACAGAAACGAGAAACTTATGACAAAC
 
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JMSF043O13-           ATGGGAAAGATGGAGTGCAACAGGACACAATGGTGGACCCTGCTGCTGTTTTTGGAATGC
                      ____________________________________________________________
consensus             ATGGGAAAGATGGAGTGCAACAGGACACAATGGTGGACCCTGCTGCTGTTTTTGGAATGC
 
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JMSF043O13-           TATTTGGGAGTGATTACTTTGAAGACTATGTGGGGCAACTTTTACTGGCTTCTTTGTCAG
                      ____________________________________________________________
consensus             TATTTGGGAGTGATTACTTTGAAGACTATGTGGGGCAACTTTTACTGGCTTCTTTGTCAG
 
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JMSF043O13-           CTGTTGAAGTAGATGAAGAGGAATCTACTCCTCCTGAAGTCCGGAAAAAGAATATTCAGG
                      ____________________________________________________________
consensus             CTGTTGAAGTAGATGAAGAGGAATCTACTCCTCCTGAAGTCCGGAAAAAGAATATTCAGG
 
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JMSF043O13-           ATAAATTGAAGGCATTGCAGAAGGAAAGGGAGGAGAAGCTTGTAACAATTTTAAAAGATC
                      ____________________________________________________________
consensus             ATAAATTGAAGGCATTGCAGAAGGAAAGGGAGGAGAAGCTTGTAACAATTTTAAAAGATC
 
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JMSF043O13-           GTCTTCAACCATATGTTGAAGGCCGTACTGAGGAGTTTGTAAGTTGGTCAACATCAGAAG
                      ____________________________________________________________
consensus             GTCTTCAACCATATGTTGAAGGCCGTACTGAGGAGTTTGTAAGTTGGTCAACATCAGAAG
 
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JMSF043O13-           CACGCCGCCTTTCTCAAGCTGCTTTTGGCGAGGCTATGCTACATACTATTGGTTATATTT
                      ____________________________________________________________
consensus             CACGCCGCCTTTCTCAAGCTGCTTTTGGCGAGGCTATGCTACATACTATTGGTTATATTT
 
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JMSF043O13-           ACAGAAGGCAAGCAGCAAAAGAAATTGGGAAGGATATACGCTTCATGAAGGTGCCATTTT
rJMSF043O13+          ACAGAAGNCAAGCAGCCAAAGGAATTGGGAAGGATATACGCTTCATGAAGGTGCCATTTT
                      ____________________________________________________________
consensus             ACAGAAGGCAAGCAGCCAAAGGAATTGGGAAGGATATACGCTTCATGAAGGTGCCATTTT
 
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JMSF043O13-           TAGC                                                        
rJMSF043O13+          TAGCAGAATGGGTACGAGATAAAGGACACCGCATAAAGTCCCAAGTTTCAGCTGCTTCAG
                      ____________________________________________________________
consensus             TAGCAGAATGGGTACGAGATAAAGGACACCGCATAAAGTCCCAAGTTTCAGCTGCTTCAG
 
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rJMSF043O13+          GTGCCATCTCTTTGCTTCAAATACAAGAGGAAGTGAGGAAGTCAGCTGAGGGAGAGAATA
                      ____________________________________________________________
consensus             GTGCCATCTCTTTGCTTCAAATACAAGAGGAAGTGAGGAAGTCAGCTGAGGGAGAGAATA
 
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rJMSF043O13+          AAGAAGAAGATGTAATCAAAACTCTAGAGGAAAAGAAAGATGCCATGCTTAATTCCCTTT
                      ____________________________________________________________
consensus             AAGAAGAAGATGTAATCAAAACTCTAGAGGAAAAGAAAGATGCCATGCTTAATTCCCTTT
 
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rJMSF043O13+          GGCAGATCAATGTTGTTGATATTGAGACAACTTTATCTCATGTTTGTCAAGCAGTCCTTA
                      ____________________________________________________________
consensus             GGCAGATCAATGTTGTTGATATTGAGACAACTTTATCTCATGTTTGTCAAGCAGTCCTTA
 
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rJMSF043O13+          AAGACCCCAGTGCTACAAAGGAGACTCTCAAGATGCGTGCTATGGCAATGAAAAAGTTGG
                      ____________________________________________________________
consensus             AAGACCCCAGTGCTACAAAGGAGACTCTCAAGATGCGTGCTATGGCAATGAAAAAGTTGG
 
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rJMSF043O13+          GAACAATTTTTGAAGGTGCAAAGGCAAATTACTCTAGAGAAAGCAGTCTGCGTCATGAAA
                      ____________________________________________________________
consensus             GAACAATTTTTGAAGGTGCAAAGGCAAATTACTCTAGAGAAAGCAGTCTGCGTCATGAAA
 
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rJMSF043O13+          GCCCCCAAAATATAGAAGGCGGTTCATCATCCAAGTGAGGCTAATTCTTCATTAATTATA
                      ____________________________________________________________
consensus             GCCCCCAAAATATAGAAGGCGGTTCATCATCCAAGTGAGGCTAATTCTTCATTAATTATA
 
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rJMSF043O13+          TTCTACGGCGTTAATATTTGGTGCTTCAGTAGTTTTTAATTTCGGTGTGGTGGTGTTGTA
                      ____________________________________________________________
consensus             TTCTACGGCGTTAATATTTGGTGCTTCAGTAGTTTTTAATTTCGGTGTGGTGGTGTTGTA
 
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rJMSF043O13+          TATTTTGTTTGTAATGTGTAATGCCTTAAATGGTATGGATACTGACAGTTCTTTGTCATT
                      ____________________________________________________________
consensus             TATTTTGTTTGTAATGTGTAATGCCTTAAATGGTATGGATACTGACAGTTCTTTGTCATT
 
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rJMSF043O13+          TGGTCTTCTTCTTTCTTGAAANCTGGATTCATTGTATGATTCTACTTATAAATTTGAGTG
                      ____________________________________________________________
consensus             TGGTCTTCTTCTTTCTTGAAANCTGGATTCATTGTATGATTCTACTTATAAATTTGAGTG