Contig 004371:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF010N08Sequence242000933 (2)ref|XP_009793696.1|4e-12PREDICTED: D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X2 [Nicoti711004371 (2)ref|XP_009587113.1|1e-78PREDICTED: D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X3 [Nicoti
JMSF043F09Sequence739000933 (2)ref|XP_009793696.1|4e-61PREDICTED: D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X2 [Nicoti836004371 (2)ref|XP_009587113.1|4e-113PREDICTED: D-2-hydroxyglutarate dehydrogenase, mitochondrial isoform X3 [Nicoti

Alignment

This contig is upended


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rJMSF043F09+           TCCTGATAGAGACAACGGGGAGTAATGAAACTTATGACAAGGAGAGATTGGAGGCCTTC
                      ____________________________________________________________
consensus              TCCTGATAGAGACAACGGGGAGTAATGAAACTTATGACAAGGAGAGATTGGAGGCCTTC
 
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rJMSF010N08+                                            ATGGAGTTGTTGCACAAGATATTAAT
rJMSF043F09+          CTGCTGCATTCAATGGAAACTGGCTTGATAACTGATGGAGTTGTTGCACAAGATATAAAT
                      ____________________________________________________________
consensus             CTGCTGCATTCAATGGAAACTGGCTTGATAACTGATGGAGTTGTTGCACAAGATATTAAT
 
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rJMSF010N08+          CAAGCATTCATCATGTTGGCATATTCGCGAGGGGTATACCTGAAGCTTTGGATGAAAGCA
rJMSF043F09+          CAAGCA-TCATCATGTTGGCATATTCGCGA-GGGTATACCTGAAGCTTT-GATGAAAGCA
                      ____________________________________________________________
consensus             CAAGCATTCATCATGTTGGCATATTCGCGAGGGGTATACCTGAAGCTTTGGATGAAAGCA
 
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rJMSF010N08+          GGAGCTGTATACAAATATGATTTGTCAATACCTGTTGAAAAGATGTATGATCTAGTTGAG
rJMSF043F09+          GGAGCTGTATACAAATATGATTTGTCAATACCTGTTGAAAAGATGTATGATCTAGTTGAG
                      ____________________________________________________________
consensus             GGAGCTGTATACAAATATGATTTGTCAATACCTGTTGAAAAGATGTATGATCTAGTTGAG
 
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rJMSF010N08+          GAAATGCGAACGCGTCTAGATGCTAAAGCTAAAGTAGTAGCATATGGTCACCTTGGGGAT
rJMSF043F09+          GAAATGCGAACGCGTCTAGATGCTAAAGCTAAAGTAGTAGCATATGGTCACCTTGGGGAT
                      ____________________________________________________________
consensus             GAAATGCGAACGCGTCTAGATGCTAAAGCTAAAGTAGTAGCATATGGTCACCTTGGGGAT
 
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rJMSF010N08+          GGAAACTTGCATCTAAATATATCTGCACCACAATATGATGATAATCTTTTATCACAAATC
rJMSF043F09+          GGAAACTTGCATCTAAATATATCTGCACCACAATATGATGATAATCTTTTATCACAAATC
                      ____________________________________________________________
consensus             GGAAACTTGCATCTAAATATATCTGCACCACAATATGATGATAATCTTTTATCACAAATC
 
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rJMSF010N08+          GAACCTTTTGTTTATGAGTGGACATCTAAGCATCATGGAAGCATCAGTGCTGAACATGGG
rJMSF043F09+          GAACCTTTTGTTTATGAGTGGACATCTAAGCATCATGGAAGCATCAGTGCTGAACATGGG
                      ____________________________________________________________
consensus             GAACCTTTTGTTTATGAGTGGACATCTAAGCATCATGGAAGCATCAGTGCTGAACATGGG
 
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rJMSF010N08+          CTTGGACTGATGAAGGCCAATAAAATCTATTACAGCAAGTCTCCTGAAACTGTGCAACTA
rJMSF043F09+          CTTGGACTGATGAAGGCCAATAAAATCTATTACAGCAAGTCTCCTGAAACTGTGCAACTA
                      ____________________________________________________________
consensus             CTTGGACTGATGAAGGCCAATAAAATCTATTACAGCAAGTCTCCTGAAACTGTGCAACTA
 
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rJMSF010N08+          ATGGCTTCTGTCAAGAGGTTGCTTGACCCTAATGGAATTCTCAATCCATATAAAGTTCTG
rJMSF043F09+          ATGGCTTCTGTCAAGAGGTTGCTTGACCCTAATGGAATTCTCAATCCATATAAAGTTCTG
                      ____________________________________________________________
consensus             ATGGCTTCTGTCAAGAGGTTGCTTGACCCTAATGGAATTCTCAATCCATATAAAGTTCTG
 
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rJMSF010N08+          CCATCTTCCTTTTCCATTCAACAGTGAGGTTCTACTAACTCAACCCATAAAGTCTGATTA
rJMSF043F09+          CCATCTTCCTTTTCCATTCAACAGTGAGGTTCTACTAACTCAACCCATAAAGTCTGATTA
                      ____________________________________________________________
consensus             CCATCTTCCTTTTCCATTCAACAGTGAGGTTCTACTAACTCAACCCATAAAGTCTGATTA
 
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rJMSF010N08+          AATACATGTATCACTAGACTAGATTACCAAGTAGAATCACCTCCAATACTGATGTAACGA
rJMSF043F09+          AATACATGTATCACTAGACTAGATTACCAAGTAGAATCACCTCCAATACTGATGTAACGA
                      ____________________________________________________________
consensus             AATACATGTATCACTAGACTAGATTACCAAGTAGAATCACCTCCAATACTGATGTAACGA
 
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rJMSF010N08+          GCGCTATGGTCTTTCACCAAGGCAAAGCTGGCAGGATTAATTTATGCATCTTGGGAACAC
rJMSF043F09+          GCGCTATGGTCTTTCACCAAGGCAAAGCTGGCAGGATTAATTTATGCATCTTGGGAACAC
                      ____________________________________________________________
consensus             GCGCTATGGTCTTTCACCAAGGCAAAGCTGGCAGGATTAATTTATGCATCTTGGGAACAC
 
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rJMSF010N08+          TCGCCTTTCAGAGGTGCGGTTTATATTAAAAGGTTCCATATTGCACATACATCCATGTTA
rJMSF043F09+          TCGCCTTTCAGAGGTGCGGTTTATATTAAAAGGTTCCATATTGCACATACATCCATGTTA
                      ____________________________________________________________
consensus             TCGCCTTTCAGAGGTGCGGTTTATATTAAAAGGTTCCATATTGCACATACATCCATGTTA
 
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rJMSF010N08+          ATCTTCCGGAAAACCTTCATTTGTG                                   
rJMSF043F09+          ATCTTCCGGAAAACCTTCATTTGTGTATTGACAGATGAATATATTAAATAAACTATGAAT
                      ____________________________________________________________
consensus             ATCTTCCGGAAAACCTTCATTTGTGTATTGACAGATGAATATATTAAATAAACTATGAAT