Contig 004368:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007B09Sequence222002408 (5)798004368 (4)ref|XP_009768919.1|3e-120PREDICTED: peroxisome biogenesis protein 6 [Nicotiana sylvestris]
JMSF010G15Sequence368004368 (4)ref|XP_006366676.1|167PREDICTED: peroxisome biogenesis protein 6-like [Solanum tuberosum]716004368 (4)ref|XP_009768919.1|7e-98PREDICTED: peroxisome biogenesis protein 6 [Nicotiana sylvestris]
JMSF043A07Sequence759002408 (5)ref|XP_006366676.1|208PREDICTED: peroxisome biogenesis protein 6-like [Solanum tuberosum]683004368 (4)ref|XP_009768919.1|2e-84PREDICTED: peroxisome biogenesis protein 6 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF010G15- GTAAAAGGGCCTGAGTTAATTA
                      ____________________________________________________________
consensus GTAAAAGGGCCTGAGTTAATTA
 
. : . : . : . : . : . :
JMSF010G15- ACATGTACATTGGAGAATCAGAGAAGAATGTTCGTGACATATTCCAGAAGGCCAGATCAG
rJMSF007B09+ TGGAGAATCAGAGANGAATGTTCGTGACATATTCCAGAAGGCCAGATCAG
                      ____________________________________________________________
consensus ACATGTACATTGGAGAATCAGAGAAGAATGTTCGTGACATATTCCAGAAGGCCAGATCAG
 
. : . : . : . : . : . :
JMSF010G15- CTCGCCCATGTGTCATCTTCTTCGATGAGCTCGACTCTCTT-CACCTGCTAGGGGTGCTT
rJMSF010G15+ TCGATGAGCTCGACTCTCTT-CACCTGCTAGGGGTGCTT
rJMSF007B09+ CTCGCCCATGTGTCATCTTTTTCGATGAGCTCGACTCTCTTGCACCTGCTAGGGGTGCTT
                      ____________________________________________________________
consensus CTCGCCCATGTGTCATCTTTTTCGATGAGCTCGACTCTCTT-CACCTGCTAGGGGTGCTT
 
. : . : . : . : . : . :
JMSF010G15- CTGGAGATTCTGGAGGAGTAATGGATCGTGTGGTTTCTCAGATGCTTGCTGAGATTGATG
rJMSF010G15+ CTGGAGATTCTGGAGGAGTAATGGATCGTGTGGTTTCTCAGATGCTTGCTGAGATTGATG
rJMSF007B09+ CTGGAGATTCTGGAGGAGTAATGGATCGTGTGGTTTCTCAGATGCTTGCTGAGATTGATG
rJMSF043A07+ TCAGATGCTTGCTGAGATTGATG
                      ____________________________________________________________
consensus CTGGAGATTCTGGAGGAGTAATGGATCGTGTGGTTTCTCAGATGCTTGCTGAGATTGATG
 
. : . : . : . : . : . :
JMSF010G15- GACTGAACGATTCTACCCAGGACTTGTTCATTATTGGGGCCAGCAACAGGCCAGATCTTA
rJMSF010G15+ GACTGAACGATTCTACCCAGGACTTGTTCATTATTGGGGCCAGCAACAGGCCAGATCTTA
rJMSF007B09+ GACTGAACGATTCTACCCAGGACTTGTTCATTATTGGGGCCAGCAACAGGCCAGATCTTA
rJMSF043A07+ GACTGAACGATTCTACCCAGGACTTGTTCATTATTGGGGCCAGCAACAGGCCAGATCTTA
                      ____________________________________________________________
consensus GACTGAACGATTCTACCCAGGACTTGTTCATTATTGGGGCCAGCAACAGGCCAGATCTTA
 
. : . : . : . : . : . :
JMSF010G15- TCGACCCCGCTCTTTTGAGGCCAGGTCGGTTCGATAAGCTCCTATATGTTGGTGTCAATT
rJMSF010G15+ TCGACCCCGCTCTTTTGAGGCCAGGTCGGTTCGATAAGCTCCTATATGTTGGTGTCAATT
rJMSF007B09+ TCGACCCCGCTCTTTTGAGGCCAGGTCGGTTCGATAAGCTCCTATATGTTGGTGTCAATT
rJMSF043A07+ TCGACCCCGCTCTTTTGAGGCCAGGTCGGTTCGATAAGCTCCTATATGTTGGTGTCAATT
                      ____________________________________________________________
consensus TCGACCCCGCTCTTTTGAGGCCAGGTCGGTTCGATAAGCTCCTATATGTTGGTGTCAATT
 
. : . : . : . : . : . :
JMSF010G15- CCGAAGCTTCTTACAGAGAGAGGGTTCTTAAAGCACTGACTAGGAAA
rJMSF010G15+ CCGAAGCTTCTTACAGAGAGAGGGTTCTTAAAGCACTGACTAGGAAATTCAAATTGCACG
rJMSF007B09+ CCGAAGCTTCTTACAGAGAGAGGGTTCTTAAAGCACTGACTAGGAAATTCAAATTGCACG
rJMSF043A07+ CCGAAGCTTCTTACAGAGAGAGGGTTCTTAAAGCACTGACTAGGAAATTCAAATTGCACG
                      ____________________________________________________________
consensus CCGAAGCTTCTTACAGAGAGAGGGTTCTTAAAGCACTGACTAGGAAATTCAAATTGCACG
 
. : . : . : . : . : . :
rJMSF010G15+ AAGATGTTTCTCTACTCTCAATAGCAAAGAAATGCCCTCCGAACTTTACAGGCGCTGATA
rJMSF007B09+ AAGATGTTTCTCTACTCTCAATAGCAAAGAAATGCCCTCCGAACTTTACAGGCGCTGATA
rJMSF043A07+ AAGATGTTTCTCTACTCTCAATAGCAAAGAAATGCCCTCCGAACTTTACAGGCGCTGATA
                      ____________________________________________________________
consensus AAGATGTTTCTCTACTCTCAATAGCAAAGAAATGCCCTCCGAACTTTACAGGCGCTGATA
 
. : . : . : . : . : . :
rJMSF010G15+ TGTATGCCCTGTGTGCTGATGCCTGGTTTCACGCTGCAAAGCGCAAGGCGTTAGCTATTG
rJMSF007B09+ TGTATGCCCTGTGTGCTGATGCCTGGTTTCACGCTGCAAAGCGCAAGGCGTTAGCTATTG
rJMSF043A07+ TGTATGCCCTGTGTGCTGATGCCTGGTTTCACGCTGCAAAGCGCAAGGCGTTAGCTATTG
                      ____________________________________________________________
consensus TGTATGCCCTGTGTGCTGATGCCTGGTTTCACGCTGCAAAGCGCAAGGCGTTAGCTATTG
 
. : . : . : . : . : . :
rJMSF010G15+ GCTTGGATTCTGGTGATGGGTCGGGCGACACAAAAGATGCGATTGTAGTTGAGTATGACG
rJMSF007B09+ GCTTGGATTCTGGTGATGGGTCGGGCGACACAAAAGATGCGATTGTAGTTGAGTATGACG
rJMSF043A07+ GCTTGGATTCTGGTGATGGGTCGGGCGACACAAAAGATGCGATTGTAGTTGAGTATGACG
                      ____________________________________________________________
consensus GCTTGGATTCTGGTGATGGGTCGGGCGACACAAAAGATGCGATTGTAGTTGAGTATGACG
 
. : . : . : . : . : . :
rJMSF010G15+ ATTTTATGAAGGTTTTATCGGACCTGTCTCCTTCATTGTCAATGGCGGAACTTATGAAAT
rJMSF007B09+ ATTTTATGAAGGTTTTATCGGACCTGTCTCCTTCATTGTCAATGGCGGAACTTATGAAAT
rJMSF043A07+ ATTTTATGAAGGTTTTATCGGACCTGTCTCCTTCATTGTCAATGGCGGAACTTATGAAAT
                      ____________________________________________________________
consensus ATTTTATGAAGGTTTTATCGGACCTGTCTCCTTCATTGTCAATGGCGGAACTTATGAAAT
 
. : . : . : . : . : . :
rJMSF010G15+ ACGAGGCATTGCGAGATCAGTTTGAAGTTTGAAGGAGCATCACCATCCAGGTGATTATGC
rJMSF007B09+ ACGAGGCATTGCGAGATCAGTTTGAAGTTTGAAGGAGCATCACCATCCAGGTGATTATGC
rJMSF043A07+ ACGAGGCATTGCGAGATCAGTTTGAAGTTTGAAGGAGCATCACCATCCAGGTGATTATGC
                      ____________________________________________________________
consensus ACGAGGCATTGCGAGATCAGTTTGAAGTTTGAAGGAGCATCACCATCCAGGTGATTATGC
 
. : . : . : . : . : . :
rJMSF010G15+ ATGCAACAGATCGAGGCACTTCAACGACATATACATACATAATACCATGAATATTTTTTT
rJMSF007B09+ ATGCAACAGATCGAGGCACTTCAACGACATATACATACATAATACCATGAATATTTTTTT
rJMSF043A07+ ATGCAACAGATCGAGGCACTTCAACGACATATACATACATAATACCATGAATATTTTTTT
                      ____________________________________________________________
consensus ATGCAACAGATCGAGGCACTTCAACGACATATACATACATAATACCATGAATATTTTTTT
 
. : . : . : . : . : . :
rJMSF010G15+ TGAACAACATTAACAACATATACATAGTACAACATTCACAACTTTAGCCAAGTTAGTCAA
rJMSF007B09+ TGAACAACATTAACAACATATACATAGTACAACATTCACAACTTTAGCCAAGTTAGTCAA
rJMSF043A07+ TGAACAACATTAACAACATATACATAGTACAACATTCACAACTTTAGCCAAGTTAGTCAA
                      ____________________________________________________________
consensus TGAACAACATTAACAACATATACATAGTACAACATTCACAACTTTAGCCAAGTTAGTCAA
 
. : . : . : . : . : . :
rJMSF010G15+ CTTATTAAGATTATAAGT
rJMSF007B09+ CTTATTAAGATTATAAGT
rJMSF043A07+ CTTATTAAGATTATAAGTTTAAGTTCAATTTCCAATAAGAATGGTTCATTAACTTCTAAT
                      ____________________________________________________________
consensus CTTATTAAGATTATAAGTTTAAGTTCAATTTCCAATAAGAATGGTTCATTAACTTCTAAT