Contig 004368:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007B09Sequence222002408 (5)798004368 (4)ref|XP_009768919.1|3e-120PREDICTED: peroxisome biogenesis protein 6 [Nicotiana sylvestris]
JMSF010G15Sequence368004368 (4)ref|XP_006366676.1|167PREDICTED: peroxisome biogenesis protein 6-like [Solanum tuberosum]716004368 (4)ref|XP_009768919.1|7e-98PREDICTED: peroxisome biogenesis protein 6 [Nicotiana sylvestris]
JMSF043A07Sequence759002408 (5)ref|XP_006366676.1|208PREDICTED: peroxisome biogenesis protein 6-like [Solanum tuberosum]683004368 (4)ref|XP_009768919.1|2e-84PREDICTED: peroxisome biogenesis protein 6 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMSF010G15-                                                 GTAAAAGGGCCTGAGTTAATTA
                      ____________________________________________________________
consensus                                                   GTAAAAGGGCCTGAGTTAATTA
 
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JMSF010G15-           ACATGTACATTGGAGAATCAGAGAAGAATGTTCGTGACATATTCCAGAAGGCCAGATCAG
rJMSF007B09+                    TGGAGAATCAGAGANGAATGTTCGTGACATATTCCAGAAGGCCAGATCAG
                      ____________________________________________________________
consensus             ACATGTACATTGGAGAATCAGAGAAGAATGTTCGTGACATATTCCAGAAGGCCAGATCAG
 
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JMSF010G15-           CTCGCCCATGTGTCATCTTCTTCGATGAGCTCGACTCTCTT-CACCTGCTAGGGGTGCTT
rJMSF010G15+                               TCGATGAGCTCGACTCTCTT-CACCTGCTAGGGGTGCTT
rJMSF007B09+          CTCGCCCATGTGTCATCTTTTTCGATGAGCTCGACTCTCTTGCACCTGCTAGGGGTGCTT
                      ____________________________________________________________
consensus             CTCGCCCATGTGTCATCTTTTTCGATGAGCTCGACTCTCTT-CACCTGCTAGGGGTGCTT
 
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JMSF010G15-           CTGGAGATTCTGGAGGAGTAATGGATCGTGTGGTTTCTCAGATGCTTGCTGAGATTGATG
rJMSF010G15+          CTGGAGATTCTGGAGGAGTAATGGATCGTGTGGTTTCTCAGATGCTTGCTGAGATTGATG
rJMSF007B09+          CTGGAGATTCTGGAGGAGTAATGGATCGTGTGGTTTCTCAGATGCTTGCTGAGATTGATG
rJMSF043A07+                                               TCAGATGCTTGCTGAGATTGATG
                      ____________________________________________________________
consensus             CTGGAGATTCTGGAGGAGTAATGGATCGTGTGGTTTCTCAGATGCTTGCTGAGATTGATG
 
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JMSF010G15-           GACTGAACGATTCTACCCAGGACTTGTTCATTATTGGGGCCAGCAACAGGCCAGATCTTA
rJMSF010G15+          GACTGAACGATTCTACCCAGGACTTGTTCATTATTGGGGCCAGCAACAGGCCAGATCTTA
rJMSF007B09+          GACTGAACGATTCTACCCAGGACTTGTTCATTATTGGGGCCAGCAACAGGCCAGATCTTA
rJMSF043A07+          GACTGAACGATTCTACCCAGGACTTGTTCATTATTGGGGCCAGCAACAGGCCAGATCTTA
                      ____________________________________________________________
consensus             GACTGAACGATTCTACCCAGGACTTGTTCATTATTGGGGCCAGCAACAGGCCAGATCTTA
 
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JMSF010G15-           TCGACCCCGCTCTTTTGAGGCCAGGTCGGTTCGATAAGCTCCTATATGTTGGTGTCAATT
rJMSF010G15+          TCGACCCCGCTCTTTTGAGGCCAGGTCGGTTCGATAAGCTCCTATATGTTGGTGTCAATT
rJMSF007B09+          TCGACCCCGCTCTTTTGAGGCCAGGTCGGTTCGATAAGCTCCTATATGTTGGTGTCAATT
rJMSF043A07+          TCGACCCCGCTCTTTTGAGGCCAGGTCGGTTCGATAAGCTCCTATATGTTGGTGTCAATT
                      ____________________________________________________________
consensus             TCGACCCCGCTCTTTTGAGGCCAGGTCGGTTCGATAAGCTCCTATATGTTGGTGTCAATT
 
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JMSF010G15-           CCGAAGCTTCTTACAGAGAGAGGGTTCTTAAAGCACTGACTAGGAAA             
rJMSF010G15+          CCGAAGCTTCTTACAGAGAGAGGGTTCTTAAAGCACTGACTAGGAAATTCAAATTGCACG
rJMSF007B09+          CCGAAGCTTCTTACAGAGAGAGGGTTCTTAAAGCACTGACTAGGAAATTCAAATTGCACG
rJMSF043A07+          CCGAAGCTTCTTACAGAGAGAGGGTTCTTAAAGCACTGACTAGGAAATTCAAATTGCACG
                      ____________________________________________________________
consensus             CCGAAGCTTCTTACAGAGAGAGGGTTCTTAAAGCACTGACTAGGAAATTCAAATTGCACG
 
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rJMSF010G15+          AAGATGTTTCTCTACTCTCAATAGCAAAGAAATGCCCTCCGAACTTTACAGGCGCTGATA
rJMSF007B09+          AAGATGTTTCTCTACTCTCAATAGCAAAGAAATGCCCTCCGAACTTTACAGGCGCTGATA
rJMSF043A07+          AAGATGTTTCTCTACTCTCAATAGCAAAGAAATGCCCTCCGAACTTTACAGGCGCTGATA
                      ____________________________________________________________
consensus             AAGATGTTTCTCTACTCTCAATAGCAAAGAAATGCCCTCCGAACTTTACAGGCGCTGATA
 
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rJMSF010G15+          TGTATGCCCTGTGTGCTGATGCCTGGTTTCACGCTGCAAAGCGCAAGGCGTTAGCTATTG
rJMSF007B09+          TGTATGCCCTGTGTGCTGATGCCTGGTTTCACGCTGCAAAGCGCAAGGCGTTAGCTATTG
rJMSF043A07+          TGTATGCCCTGTGTGCTGATGCCTGGTTTCACGCTGCAAAGCGCAAGGCGTTAGCTATTG
                      ____________________________________________________________
consensus             TGTATGCCCTGTGTGCTGATGCCTGGTTTCACGCTGCAAAGCGCAAGGCGTTAGCTATTG
 
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rJMSF010G15+          GCTTGGATTCTGGTGATGGGTCGGGCGACACAAAAGATGCGATTGTAGTTGAGTATGACG
rJMSF007B09+          GCTTGGATTCTGGTGATGGGTCGGGCGACACAAAAGATGCGATTGTAGTTGAGTATGACG
rJMSF043A07+          GCTTGGATTCTGGTGATGGGTCGGGCGACACAAAAGATGCGATTGTAGTTGAGTATGACG
                      ____________________________________________________________
consensus             GCTTGGATTCTGGTGATGGGTCGGGCGACACAAAAGATGCGATTGTAGTTGAGTATGACG
 
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rJMSF010G15+          ATTTTATGAAGGTTTTATCGGACCTGTCTCCTTCATTGTCAATGGCGGAACTTATGAAAT
rJMSF007B09+          ATTTTATGAAGGTTTTATCGGACCTGTCTCCTTCATTGTCAATGGCGGAACTTATGAAAT
rJMSF043A07+          ATTTTATGAAGGTTTTATCGGACCTGTCTCCTTCATTGTCAATGGCGGAACTTATGAAAT
                      ____________________________________________________________
consensus             ATTTTATGAAGGTTTTATCGGACCTGTCTCCTTCATTGTCAATGGCGGAACTTATGAAAT
 
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rJMSF010G15+          ACGAGGCATTGCGAGATCAGTTTGAAGTTTGAAGGAGCATCACCATCCAGGTGATTATGC
rJMSF007B09+          ACGAGGCATTGCGAGATCAGTTTGAAGTTTGAAGGAGCATCACCATCCAGGTGATTATGC
rJMSF043A07+          ACGAGGCATTGCGAGATCAGTTTGAAGTTTGAAGGAGCATCACCATCCAGGTGATTATGC
                      ____________________________________________________________
consensus             ACGAGGCATTGCGAGATCAGTTTGAAGTTTGAAGGAGCATCACCATCCAGGTGATTATGC
 
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rJMSF010G15+          ATGCAACAGATCGAGGCACTTCAACGACATATACATACATAATACCATGAATATTTTTTT
rJMSF007B09+          ATGCAACAGATCGAGGCACTTCAACGACATATACATACATAATACCATGAATATTTTTTT
rJMSF043A07+          ATGCAACAGATCGAGGCACTTCAACGACATATACATACATAATACCATGAATATTTTTTT
                      ____________________________________________________________
consensus             ATGCAACAGATCGAGGCACTTCAACGACATATACATACATAATACCATGAATATTTTTTT
 
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rJMSF010G15+          TGAACAACATTAACAACATATACATAGTACAACATTCACAACTTTAGCCAAGTTAGTCAA
rJMSF007B09+          TGAACAACATTAACAACATATACATAGTACAACATTCACAACTTTAGCCAAGTTAGTCAA
rJMSF043A07+          TGAACAACATTAACAACATATACATAGTACAACATTCACAACTTTAGCCAAGTTAGTCAA
                      ____________________________________________________________
consensus             TGAACAACATTAACAACATATACATAGTACAACATTCACAACTTTAGCCAAGTTAGTCAA
 
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rJMSF010G15+          CTTATTAAGATTATAAGT                                          
rJMSF007B09+          CTTATTAAGATTATAAGT                                          
rJMSF043A07+          CTTATTAAGATTATAAGTTTAAGTTCAATTTCCAATAAGAATGGTTCATTAACTTCTAAT
                      ____________________________________________________________
consensus             CTTATTAAGATTATAAGTTTAAGTTCAATTTCCAATAAGAATGGTTCATTAACTTCTAAT