| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF013P02 | Sequence | 420 | 011955 (3) | 747 | 004365 (5) | ref|XP_006347595.1| | 2e-138 | PREDICTED: putative ribokinase-like [Solanum tuberosum] | |||
| JMSF034D13 | Sequence | 687 | 004365 (5) | ref|XP_009621737.1| | 6e-13 | PREDICTED: uncharacterized protein LOC104113319 isoform X2 [Nicotiana tomentosi | 789 | 004365 (5) | ref|XP_006347595.1| | 3e-136 | PREDICTED: putative ribokinase-like [Solanum tuberosum] |
| JMSF042I03 | Sequence | 757 | 011955 (3) | ref|XP_002319785.1| | 4e-24 | hypothetical protein POPTR_0013s07620g [Populus trichocarpa] gb|EEE95708.1| hypo | 712 | 004365 (5) | ref|XP_006347595.1| | 3e-120 | PREDICTED: putative ribokinase-like [Solanum tuberosum] |
| JMSF045L17 | Sequence | 770 | 011955 (3) | ref|XP_009621737.1| | 4e-42 | PREDICTED: uncharacterized protein LOC104113319 isoform X2 [Nicotiana tomentosi | 760 | 004365 (5) | ref|XP_006347595.1| | 5e-136 | PREDICTED: putative ribokinase-like [Solanum tuberosum] |
This contig is upended
. : . : . : . : . : . :
JMSF034D13- GGGGACCTCTGCTATGGAGATTTTGATGGAGTTACGT
____________________________________________________________
consensus GGGGACCTCTGCTATGGAGATTTTGATGGAGTTACGT
. : . : . : . : . : . :
JMSF034D13- GTTTCTCCATCCTCAATCCATCCCTGAACATTCATGCAGGAGATTCTTTTCTATTGTTTT
____________________________________________________________
consensus GTTTCTCCATCCTCAATCCATCCCTGAACATTCATGCAGGAGATTCTTTTCTATTGTTTT
. : . : . : . : . : . :
JMSF034D13- TTTTCTTTTAATTTCTTTTTCGGTCAATTATAGGAAGAAAAATCATGTCTTTCTCTATCC
____________________________________________________________
consensus TTTTCTTTTAATTTCTTTTTCGGTCAATTATAGGAAGAAAAATCATGTCTTTCTCTATCC
. : . : . : . : . : . :
JMSF034D13- TCTCATCCTCGTGTTTCTCTCTTCCCAATCCCGACGTTTCATCTCCGCCCTCCACTGTTT
____________________________________________________________
consensus TCTCATCCTCGTGTTTCTCTCTTCCCAATCCCGACGTTTCATCTCCGCCCTCCACTGTTT
. : . : . : . : . : . :
JMSF034D13- CTCCCCTTTTAAAGAAACCCCATTTCCATCCCTGTCCCAAATCCAAAAAATTTCCTAATT
____________________________________________________________
consensus CTCCCCTTTTAAAGAAACCCCATTTCCATCCCTGTCCCAAATCCAAAAAATTTCCTAATT
. : . : . : . : . : . :
JMSF034D13- ATTTCTCGCTTTCCGTTAATTGTATTACTTTTTCTTATTCTATGTCGACCGGTGGTAAAG
____________________________________________________________
consensus ATTTCTCGCTTTCCGTTAATTGTATTACTTTTTCTTATTCTATGTCGACCGGTGGTAAAG
. : . : . : . : . : . :
JMSF034D13- ATGCCCTTCTGTGTAGAGTGGCGTCGTCGCCGTCTCCCTCCTTCCGGTGCAATTCCGATG
____________________________________________________________
consensus ATGCCCTTCTGTGTAGAGTGGCGTCGTCGCCGTCTCCCTCCTTCCGGTGCAATTCCGATG
. : . : . : . : . : . :
JMSF034D13- AGGGAAGCGGGGACCATGTTTCCTGCGCAAATGAAGCAGATGGGGCTGAAGATTCTGAAG
____________________________________________________________
consensus AGGGAAGCGGGGACCATGTTTCCTGCGCAAATGAAGCAGATGGGGCTGAAGATTCTGAAG
. : . : . : . : . : . :
JMSF034D13- ATGACGAGCATGGAGGAGTAATGGTTCATGATGTGGATGAGGAAGAAGACAACAGTAGTC
____________________________________________________________
consensus ATGACGAGCATGGAGGAGTAATGGTTCATGATGTGGATGAGGAAGAAGACAACAGTAGTC
. : . : . : . : . : . :
JMSF034D13- CCACTTCTGTTCTGTCAATGAGATGGGATGTCTTGGGCCTTGGCCAAGCTATGATCCAAG
____________________________________________________________
consensus CCACTTCTGTTCTGTCAATGAGATGGGATGTCTTGGGCCTTGGCCAAGCTATGATCCAAG
. : . : . : . : . : . :
JMSF034D13- CTACGGCGAGCAAATGTGAATTTCTTGTCTGCACCAGTCAAAGATGGAACGACAGAGACA
rJMSF013P02+ GGACA
rJMSF045L17+ GACA
rJMSF034D13+ GACA
____________________________________________________________
consensus CTACGGCGAGCAAATGTGAATTTCTTGTCTGCACCAGTCAAAGATGGAACGACAGGGACA
. : . : . : . : . : . :
JMSF034D13- GTGATTGTTCTTACCACACCAGATGCTCAACGGACAATGCTTGCTTATCA
rJMSF013P02+ GTGATTGTTCTTACCACACCAGATGCTCAACGGACAATGCTTGCTTATCAGGGTACATCT
rJMSF045L17+ GTGATTGTTCTTACCACACCAGATGCTCAACGGACAATGCTTGCTTATCAGGGTACATCT
rJMSF034D13+ GTGATTGTTCTTACCACACCAGATGCTCAACGGACAATGCNTGCTTATCAGGGTACATCT
____________________________________________________________
consensus GTGATTGTTCTTACCACACCAGATGCTCAACGGACAATGCTTGCTTATCAGGGTACATCT
. : . : . : . : . : . :
rJMSF013P02+ TCGACCATTACATACGAGCCCTTCTTGGCTAGAGCAATTTCAAGAACAAAGATATTAGTT
rJMSF045L17+ TCGACCATTACATACGAGCCCTTCTTGGCTAGAGCAATTTCAAGAACAAAGATATTAGTT
rJMSF034D13+ TCGACCATTACATACGAGCCCTTCTTGGCTAGAGCAATTTCAAGAACAAAGATATTAGTT
rJMSF042I03+ TACATACGAGCCCTTCTTGGCTAGAGCAATTTCAAGAACAAAGATATTAGTT
____________________________________________________________
consensus TCGACCATTACATACGAGCCCTTCTTGGCTAGAGCAATTTCAAGAACAAAGATATTAGTT
. : . : . : . : . : . :
rJMSF013P02+ GTAGAGGGATATCTATTTGAGCTTCCTGATACAATCAAAACAATTGCAAAAGCATGTGAG
rJMSF045L17+ GTAGAGGGATATCTATTTGAGCTTCCTGATACAATCAAAACAATTGCAAAAGCATGTGAG
rJMSF034D13+ GTAGAGGGATATCTATTTGAGCTTCCTGATACAATCAAAACAATTGCAAAAGCATGTGAG
rJMSF042I03+ GTAGAGGGATATCTATTTGAGCTTCCTGATACAATCAAAACAATTGCAAAAGCATGTGAG
____________________________________________________________
consensus GTAGAGGGATATCTATTTGAGCTTCCTGATACAATCAAAACAATTGCAAAAGCATGTGAG
. : . : . : . : . : . :
rJMSF013P02+ GATGCCCGCAGGTTTGGTGCATTGGTTGCCATCACAGCATCAGACGTGTCGTGCATCGAG
rJMSF045L17+ GATGCCCGCAGGTTTGGTGCATTGGTTGCCATCACAGCATCAGACGTGTCGTGCATCGAG
rJMSF034D13+ GATGCCCGCAGGTTTGGTGCATTGGTTGCCATCACAGCATCAGACGTGTCGTGCATCGAG
rJMSF042I03+ GATGCCCGCAGGTTTGGTGCATTGGTTGCCATCACAGCATCAGACGTGTCGTGCATCGAG
____________________________________________________________
consensus GATGCCCGCAGGTTTGGTGCATTGGTTGCCATCACAGCATCAGACGTGTCGTGCATCGAG
. : . : . : . : . : . :
rJMSF013P02+ AGACACTACGATGATTTCTGGGAGATCATCGCAAACTATGCAGACATTGTCTTCACAAAT
rJMSF045L17+ AGACACTACGATGATTTCTGGGAGATCATCGCAAACTATGCAGACATTGTCTTCACAAAT
rJMSF034D13+ AGACACTACGATGATTTCTGGGAGATCATCGCAAACTATGCAGACATTGTCTTCACAAAT
rJMSF042I03+ AGACACTACGATGATTTCTGGGAGATCATCGCAAACTATGCAGACATTGTCTTCACAAAT
____________________________________________________________
consensus AGACACTACGATGATTTCTGGGAGATCATCGCAAACTATGCAGACATTGTCTTCACAAAT
. : . : . : . : . : . :
rJMSF013P02+ AGCGATGAAGCCAGAGCTTTCTGTCATTTTCGGTCAAACGAAAGCCCCGATTCTGCTGCA
rJMSF045L17+ AGCGATGAAGCCAGAGCTTTCTGTCATTTTCGGTCAAACGAAAGCCCCGATTCTGCTGCA
rJMSF034D13+ AGCGATGAAGCCAGAGCTTTCTGTCATTTTCGGTCAAACGAAAGCCCCGATTCTGCTGCA
rJMSF042I03+ AGCGATGAAGCCAGAGCTTTCTGTCATTTTCGGTCAAACGAAAGCCCCGATTCTGCTGCA
____________________________________________________________
consensus AGCGATGAAGCCAGAGCTTTCTGTCATTTTCGGTCAAACGAAAGCCCCGATTCTGCTGCA
. : . : . : . : . : . :
rJMSF013P02+ AGGTACCTAAGCCATTTTGTTCCGTTAGTATCAGTTACAGATGGTGCAAGAGGGTCTTAC
rJMSF045L17+ AGGTACCTAAGCCATTTTGTTCCGTTAGTATCAGTTACAGATGGTGCAAGAGGGTCTTAC
rJMSF034D13+ AGGTACCTAAGCCATTTTGTTCCGTTAGTATCAGTTACAGATGGTGCAAGAGGGTCTTAC
rJMSF042I03+ AGGTACCTAAGCCATTTTGTTCCGTTAGTATCAGTTACAGATGGTGCAAGAGGGTCTTAC
____________________________________________________________
consensus AGGTACCTAAGCCATTTTGTTCCGTTAGTATCAGTTACAGATGGTGCAAGAGGGTCTTAC
. : . : . : . : . : . :
rJMSF013P02+ ATTGGCGTAAAAGGGGAAGCTGTTTATGTTCCTCCTTCCCCATGCATGCCATTAGATACG
rJMSF045L17+ ATTGGCGTAAAAGGGGAAGCTGTTTATGTTCCTCCTTCCCCATGCATGCCATTAGATACG
rJMSF034D13+ ATTGGCGTAAAAGGGGAAGCTGTTTATGTTCCTCCTTCCCCATGCATGCCATTAGATACG
rJMSF042I03+ ATTGGCGTAAAAGGGGAAGCTGTTTATGTTCCTCCTTCCCCATGCATGCCATTAGATACG
____________________________________________________________
consensus ATTGGCGTAAAAGGGGAAGCTGTTTATGTTCCTCCTTCCCCATGCATGCCATTAGATACG
. : . : . : . : . : . :
rJMSF013P02+ TGTGGTGCAGGCGATGCTTATGCATCTGGTATTTTGTATGGTATACTTCGTGGTGTATCC
rJMSF045L17+ TGTGGTGCAGGCGATGCTTATGCATCTGGTATTTTGTATGGTATACTTCGTGGTGTATCC
rJMSF034D13+ TGTGGTGCAGGCGATGCTTATGCATCTGGTATTTTGTATGGTATACTTCGTGGTGTATCC
rJMSF042I03+ TGTGGTGCAGGCGATGCTTATGCATCTGGTATTTTGTATGGTATACTTCGTGGTGTATCC
____________________________________________________________
consensus TGTGGTGCAGGCGATGCTTATGCATCTGGTATTTTGTATGGTATACTTCGTGGTGTATCC
. : . : . : . : . : . :
rJMSF013P02+ GACTTGAAGGACGTGGGTACACTTGCAGCTAAGGTCGCGTCTGTAGTTGTAGGGCAGCAA
rJMSF045L17+ GACTTGAAGGACGTGGGTACACTTGCAGCTAAGGTCGCGTCTGTAGTTGTAGGGCAGCAA
rJMSF034D13+ GACTTGAAGGACGTGGGTACACTTGCAGCTAAGGTCGCGTCTGTAGTTGTAGGGCAGCAA
rJMSF042I03+ GACTTGAAGGACGTGGGTACACTTGCAGCTAAGGTCGCGTCTGTAGTTGTAGGGCAGCAA
____________________________________________________________
consensus GACTTGAAGGACGTGGGTACACTTGCAGCTAAGGTCGCGTCTGTAGTTGTAGGGCAGCAA
. : . : . : . : . : . :
rJMSF013P02+ GGAACCAGGCTTAGGGTACAGGATGCCAGTGAATTGGCAGAAATGTTTGAACACCAGCTT
rJMSF045L17+ GGAACCAGGCTTAGGGTACAGGATGCCAGTGAATTGGCAGAAATGTTTGAACACCAGCTT
rJMSF034D13+ GGAACCAGGCTTAGGGTACAGGATGCCAGTGAATTGGCAGAAATGTTTGAACACCAGCTT
rJMSF042I03+ GGAACCAGGCTTAGGGTACAGGATGCCAGTGAATTGGCAGAAATGTTTGAACACCAGCTT
____________________________________________________________
consensus GGAACCAGGCTTAGGGTACAGGATGCCAGTGAATTGGCAGAAATGTTTGAACACCAGCTT
. : . : . : . : . : . :
rJMSF013P02+ AATAATTCCTCGATTTGGTCTGATATTGCTTCTGACCAAATCTCTAGCTTGTAACAATTA
rJMSF045L17+ AATAATTCCTCGATTTGGTCTGATATTGCTTCTGACCAAATCTCTAGCTTGTAACAATTA
rJMSF034D13+ AATAATTCCTCGATTTGGTCTGATATTGCTTCTGACCAAATCTCTAGCTTGTAACAATTA
rJMSF042I03+ AATAATTCCTCGATTTGGTCTGATATTGCTTCTGACCAAATCTCTAGCTTGTAACAATTA
____________________________________________________________
consensus AATAATTCCTCGATTTGGTCTGATATTGCTTCTGACCAAATCTCTAGCTTGTAACAATTA
. : . : . : . : . : . :
rJMSF013P02+ ACTCAACTCATGCTT
rJMSF045L17+ ACTCAACTCATGCTT
rJMSF034D13+ ACTCAACTCATGCTTATTGTAGTCAGACTCTTCAAATATCTGTAAACTAGACTCA
rJMSF042I03+ ACTCAACTCATGCTTATTGTAGTCAGACTCTTCAAATATCTGTAAACTAGACTCATTCTA
____________________________________________________________
consensus ACTCAACTCATGCTTATTGTAGTCAGACTCTTCAAATATCTGTAAACTAGACTCATTCTA