Contig 004364:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF007N07Sequence247006671 (2)ref|XP_010113127.1|4e-05Alpha-L-fucosidase 1 [Morus notabilis] gb|EXC66584.1| Alpha-L-fucosidase 1 [Moru794004364 (2)ref|XP_002318264.2|3e-120hypothetical protein POPTR_0012s14150g [Populus trichocarpa] gb|EEE96484.2| hypo
JMSF042H05Sequence778006671 (2)ref|XP_009613727.1|1e-89PREDICTED: alpha-L-fucosidase 1-like [Nicotiana tomentosiformis]810004364 (2)ref|XP_002318264.2|3e-121hypothetical protein POPTR_0012s14150g [Populus trichocarpa] gb|EEE96484.2| hypo

Alignment

This contig is upended


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rJMSF007N07+                                        TTTCAATTGNCAATGGCAGCTTAATTAATT
rJMSF042H05+                                        TTTCAATTGGCAATGGCAGCTTAATTAATT
                      ____________________________________________________________
consensus                                           TTTCAATTGGCAATGGCAGCTTAATTAATT
 
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rJMSF007N07+          ATCTTAACACCGGAGACTCGAAAGGGACGGATTGGCTACCGTCGGAATGTGACGTCTCAA
rJMSF042H05+          ATCTTAACACCGGAGACTCGAAAGGGACGGATTGGCTACCGTCGGAATGTGACGTCTCAA
                      ____________________________________________________________
consensus             ATCTTAACACCGGAGACTCGAAAGGGACGGATTGGCTACCGTCGGAATGTGACGTCTCAA
 
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rJMSF007N07+          TCCGAAAGGGATGGTTTTGGCATAAATCACAAGCACCAAAGACGCTTACAGAGTTACTTG
rJMSF042H05+          TCCGAAAGGGATGGTTTTGGCATAAATCACAAGCACCAAAGACGCTTACAGAGTTACTTG
                      ____________________________________________________________
consensus             TCCGAAAGGGATGGTTTTGGCATAAATCACAAGCACCAAAGACGCTTACAGAGTTACTTG
 
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rJMSF007N07+          AAATTTACTACAATTCAGTGGGACGGAATTGCCTGTTACTGCTAAACGTACCGCCTAATA
rJMSF042H05+          AAATTTACTACAATTCAGTGGGACGGAATTGCCTGTTACTGCTAAACGTACCGCCTAATA
                      ____________________________________________________________
consensus             AAATTTACTACAATTCAGTGGGACGGAATTGCCTGTTACTGCTAAACGTACCGCCTAATA
 
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rJMSF007N07+          CAAAAGGATTGATATCAGATAGTGACGTGATGAGATTAAAGGAGTTTAGAGGTGCCATTG
rJMSF042H05+          CAAAAGGATTGATATCAGATAGTGACGTGATGAGATTAAAGGAGTTTAGAGGTGCCATTG
                      ____________________________________________________________
consensus             CAAAAGGATTGATATCAGATAGTGACGTGATGAGATTAAAGGAGTTTAGAGGTGCCATTG
 
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rJMSF007N07+          AGACAATATTCTCATCAAATTTGGCTGAAAATTGTTCAATAAAAGTAAGTAGCCAAAGGG
rJMSF042H05+          AGACAATATTCTCATCAAATTTGGCTGAAAATTGTTCAATAAAAGTAAGTAGCCAAAGGG
                      ____________________________________________________________
consensus             AGACAATATTCTCATCAAATTTGGCTGAAAATTGTTCAATAAAAGTAAGTAGCCAAAGGG
 
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rJMSF007N07+          GAGGTGGGTTTGGACCTGAAAATATGATAGATGGTGATCATTTATGGACTTACTGGGCAC
rJMSF042H05+          GAGGTGGGTTTGGACCTGAAAATATGATAGATGGTGATCATTTATGGACTTACTGGGCAC
                      ____________________________________________________________
consensus             GAGGTGGGTTTGGACCTGAAAATATGATAGATGGTGATCATTTATGGACTTACTGGGCAC
 
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rJMSF007N07+          CCATGGATGAATACACGGGACACCATTGGATCAAACTGACGGCGTTTAAAGAAAAACTGA
rJMSF042H05+          CCATGGATGAATACACGGGACACCATTGGATCAAACTGACGGCGTTTAAAGAAAAACTGA
                      ____________________________________________________________
consensus             CCATGGATGAATACACGGGACACCATTGGATCAAACTGACGGCGTTTAAAGAAAAACTGA
 
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rJMSF007N07+          AATTCAACGTGGTACGTATTCAAGAAGCAATCGGATTAGGACAGAGAATAAAACGCCACC
rJMSF042H05+          AATTCAACGTGGTACGTATTCAAGAAGCAATCGGATTAGGACAGAGAATAAAACGCCACC
                      ____________________________________________________________
consensus             AATTCAACGTGGTACGTATTCAAGAAGCAATCGGATTAGGACAGAGAATAAAACGCCACC
 
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rJMSF007N07+          AAGTTTACGTGGACGGAGTTAAGGTTGCAGACGGCACCACCGTGGGGTACAAAAAGCTTC
rJMSF042H05+          AAGTTTACGTGGACGGAGTTAAGGTTGCAGACGGCACCACCGTGGGGTACAAAAAGCTTC
                      ____________________________________________________________
consensus             AAGTTTACGTGGACGGAGTTAAGGTTGCAGACGGCACCACCGTGGGGTACAAAAAGCTTC
 
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rJMSF007N07+          ATAGGCTTGAAAAGGGAGTGGTGGAAGGGTACAGTGTGAAGATCAAAATAATTGGGTCAC
rJMSF042H05+          ATAGGCTTGAAAAGGGAGTGGTGGAAGGGTACAGTGTGAAGATCAAAATAATTGGGTCAC
                      ____________________________________________________________
consensus             ATAGGCTTGAAAAGGGAGTGGTGGAAGGGTACAGTGTGAAGATCAAAATAATTGGGTCAC
 
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rJMSF007N07+          GGGCGTCACCTTTAATCTCTTCAATAGGTCTCCATTTTGATCCCTTTTGGCACCCATATT
rJMSF042H05+          GGGCGTCACCTTTAATCTCTTCAATAGGTCTCCATTTTGATCCCTTTTGGCACCCATATT
                      ____________________________________________________________
consensus             GGGCGTCACCTTTAATCTCTTCAATAGGTCTCCATTTTGATCCCTTTTGGCACCCATATT
 
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rJMSF007N07+          CATAGTGAGCTAGCAGTGTCTAACGTTTTCTGCACATCTCTTTCTTCCTGTTTTGTCTCT
rJMSF042H05+          CATAGTGAGCTAGCAGTGTCTAACGTTTTCTGCACATCTCTTTCTTCCTGTTTTGTCTCT
                      ____________________________________________________________
consensus             CATAGTGAGCTAGCAGTGTCTAACGTTTTCTGCACATCTCTTTCTTCCTGTTTTGTCTCT
 
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rJMSF007N07+          GTGTTCCCGAAAATTGATATTTCAATAA                                
rJMSF042H05+          GTGTTCCCGAAAATTGATATGTCAATAAACAGCGACAAAAAGGCTAGCATGCCACAAAAG
                      ____________________________________________________________
consensus             GTGTTCCCGAAAATTGATATTTCAATAAACAGCGACAAAAAGGCTAGCATGCCACAAAAG