Contig 004362:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027E04Sequence564011793 (3)gb|AAO26684.1|AF478370_12e-62gag-pol polyprotein [Vitis vinifera]756004362 (5)ref|XP_004232438.1|209PREDICTED: uncharacterized protein LOC101268534 [Solanum lycopersicum]
JMFF044P03Sequence638011793 (3)gb|AAO26684.1|AF478370_14e-62gag-pol polyprotein [Vitis vinifera]615004362 (5)ref|XP_004232438.1|140PREDICTED: uncharacterized protein LOC101268534 [Solanum lycopersicum]
JMSF033C03Sequence641009501 (3)ref|XP_009773504.1|113PREDICTED: uncharacterized protein LOC104223722 [Nicotiana sylvestris]692004362 (5)ref|XP_009773658.1|318PREDICTED: uncharacterized protein LOC104223852, partial [Nicotiana sylvestris]
JMSF042C14Sequence778009501 (3)ref|XP_009773504.1|174PREDICTED: uncharacterized protein LOC104223722 [Nicotiana sylvestris]801004362 (5)ref|XP_009773658.1|330PREDICTED: uncharacterized protein LOC104223852, partial [Nicotiana sylvestris]
JMSF048J14Sequence685009501 (3)ref|XP_009773504.1|129PREDICTED: uncharacterized protein LOC104223722 [Nicotiana sylvestris]774004362 (5)gb|KDO71027.1|8e-121hypothetical protein CISIN_1g011779mg [Citrus sinensis]

Alignment

This contig is upended


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rJMSF048J14+            CATGAAATGCGAGGCCACTACTTCCATCTTGACTATGTAAAACATCTTCCACTTGTTG
                      ____________________________________________________________
consensus               CATGAAATGCGAGGCCACTACTTCCATCTTGACTATGTAAAACATCTTCCACTTGTTG
 
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rJMSF048J14+          CTGGTGCAATGATTGATTCACATGTAACAGCAGAATACTGGAAGAATAGGACAGCAGAAC
                      ____________________________________________________________
consensus             CTGGTGCAATGATTGATTCACATGTAACAGCAGAATACTGGAAGAATAGGACAGCAGAAC
 
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rJMSF048J14+          GCCTAAGGATTAAAATGCCCAAAACCTATGTTGTTCACCTTGGGAATAGCAAGGAGCTAA
                      ____________________________________________________________
consensus             GCCTAAGGATTAAAATGCCCAAAACCTATGTTGTTCACCTTGGGAATAGCAAGGAGCTAA
 
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rJMSF048J14+          TGGAAGTTGCTGAAGATAGTGTTGCAAAAAGGATTTTGCGGGAACATGTTCGTGAGTCAC
rJMSF042C14+                                                 GGGAACATGTTCGTGAGTCAC
                      ____________________________________________________________
consensus             TGGAAGTTGCTGAAGATAGTGTTGCAAAAAGGATTTTGCGGGAACATGTTCGTGAGTCAC
 
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rJMSF048J14+          TTGGAGTTAG-AAATGAGGATATACTATTTGCTCTGATAAACAGTGTTTCTCGTGGGAAG
rJMFF027E04+                     AAATGAGGATATACTATTTGCTCTGATAAACAGTGTTTCTCGTGGGAAG
rJMSF033C03+                                         CTCTGATAAACAGTGTTTCTCGTGGGAAG
rJMSF042C14+          TTGGAGTTAGNAAATGAGGATATACTATTTGCTCTGATAAACAGTGTTTCTCGTGGGAAG
                      ____________________________________________________________
consensus             TTGGAGTTAGNAAATGAGGATATACTATTTGCTCTGATAAACAGTGTTTCTCGTGGGAAG
 
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rJMSF048J14+          GGTCAAGACTTATTTTTGCATTCCTTCTATGAGAGCTTGCAATTGATTCAACAAAAGAAG
rJMFF027E04+          GGTCAAGACTTATTTTTGCATTCCTTCTATGAGAGCTTGCAATTGATTCAACAAAAGAAG
rJMSF033C03+          GGTCAAGACTTATTTTTGCATTCCTTCTATGAGAGCTTGCAATTGATTCAACAAAAGAAG
rJMSF042C14+          GGTCAAGACTTATTTTTGCATTCCTTCTATGAGAGCTTGCAATTGATTCAACAAAAGAAG
                      ____________________________________________________________
consensus             GGTCAAGACTTATTTTTGCATTCCTTCTATGAGAGCTTGCAATTGATTCAACAAAAGAAG
 
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rJMSF048J14+          TTACAATTGCCAACTGTCCATGCTGTTGTTGTAGGAAGTGATTTGACTACTCAAAGCAAA
rJMFF027E04+          TTACAATTGCCAACTGTCCATGCTGTTGTTGTAGGAAGTGATTTGACTACTCAAAGCAAA
rJMSF033C03+          TTACAATTGCCAACTGTCCATGCTGTTGTTGTAGGAAGTGATTTGACTACTCAAAGCAAA
rJMFF044P03+                                         TAGGAAGTGATTTGACTACTCAAAGCAAA
rJMSF042C14+          TTACAATTGCCAACTGTCCATGCTGTTGTTGTAGGAAGTGATTTGACTACTCAAAGCAAA
                      ____________________________________________________________
consensus             TTACAATTGCCAACTGTCCATGCTGTTGTTGTAGGAAGTGATTTGACTACTCAAAGCAAA
 
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rJMSF048J14+          TTTGAGTTAGAGCTTAGGAACTTTGTGCAACTTAAGAAGATCCAAAACTATGTGCATTTT
rJMFF027E04+          TTTGAGTTAGAGCTTAGGAACTTTGTGCAACTTAAGAAGATCCAAAACTATGTGCATTTT
rJMSF033C03+          TTTGAGTTAGAGCTTAGGAACTTTGTGCAACTTAAGAAGATCCAAAACTATGTGCATTTT
rJMFF044P03+          TTTGAGTTAGAGCTTAGGAACTTTGTGCAACTTAAGAAGATCCAAAACTATGTGCATTTT
rJMSF042C14+          TTTGAGTTAGAGCTTAGGAACTTTGTGCAACTTAAGAAGATCCAAAACTATGTGCATTTT
                      ____________________________________________________________
consensus             TTTGAGTTAGAGCTTAGGAACTTTGTGCAACTTAAGAAGATCCAAAACTATGTGCATTTT
 
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rJMSF048J14+          GTCAATAAGACTCTGACAGTTGCACCATATCTTGCTGCAATTGATGTACTTGTGCAAAAT
rJMFF027E04+          GTCAATAAGACTCTGACAGTTGCACCATATCTTGCTGCAATTGATGTACTTGTGCAAAAT
rJMSF033C03+          GTCAATAAGACTCTGACAGTTGCACCATATCTTGCTGCAATTGATGTACTTGTGCAAAAT
rJMFF044P03+          GTCAATAAGACTCTGACAGTTGCACCATATCTTGCTGCAATTGATGTACTTGTGCAAAAT
rJMSF042C14+          GTCAATAAGACTCTGACAGTTGCACCATATCTTGCTGCAATTGGTGTACTTGTGCAAAAT
                      ____________________________________________________________
consensus             GTCAATAAGACTCTGACAGTTGCACCATATCTTGCTGCAATTGATGTACTTGTGCAAAAT
 
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rJMSF048J14+          TCACAGGCCCGGGGAGAATGTTTTGGTAGGATTACCATTGAAGCCATGGCATTTCAGCTT
rJMFF027E04+          TCACAGGCCCGGGGAGAATGTTTTGGTAGGATTACCATTGAAGCCATGGCATTTCAGCTT
rJMSF033C03+          TCACAGGCCCGGGGAGAATGTTTTGGTAGGATTACCATTGAAGCCATGGCATTTCAGCTT
rJMFF044P03+          TCACAGGCCCGGGGAGAATGTTTTGGTAGGATTACCATTGAAGCCATGGCATTTCAGCTT
rJMSF042C14+          TCACAGGCCCGGGGAGAATGTTTTGGTAGGATTACCATTGAAGCCATGGCATTTCAGCTT
                      ____________________________________________________________
consensus             TCACAGGCCCGGGGAGAATGTTTTGGTAGGATTACCATTGAAGCCATGGCATTTCAGCTT
 
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rJMSF048J14+          CCTGTGTTG                                                   
rJMFF027E04+          CCTGTGTT-------GCAGCTGGTGGTACTCGAGAAGTCGTTCTAAACGGAACAACTGGG
rJMSF033C03+          CCTGTGTTGGGAACAGCAGCTGGTGGTACTCGAGAAATCGTTCTAAACGGAACAACTGGG
rJMFF044P03+          CCTGTGTT-------GCAGCTGGTGGTACTCGAGAAGTCGTTCTAAACGGAACAACTGGG
rJMSF042C14+          CCTGTGTTGGGAACAGCAGCTGGTGGTACTCGAGAAATCGTTCTAAACGGAACAACTGGG
                      ____________________________________________________________
consensus             CCTGTGTTGGGAACAGCAGCTGGTGGTACTCGAGAAGTCGTTCTAAACGGAACAACTGGG
 
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rJMFF027E04+          TTACTGCACCCCGTGGGGAAAGGCGGGGTAATGCCTCTGGCAAGAAACATAGTGAACCTC
rJMSF033C03+          TTACTGCACCCCGTGGGGAAAGGCGGGGTAATGCCTCTGGCAAGAAACATAGTGAACCTC
rJMFF044P03+          TTACTGCACCCCGTGGGGAAAGGCGGGGTAATGCCTCTGGCAAGAAACATAGTGAACCTC
rJMSF042C14+          TTACTGCACCCCGTGGGGAAAGGCGGGGTAATGCCTCTGGCAAGAAACATAGTGAACCTC
                      ____________________________________________________________
consensus             TTACTGCACCCCGTGGGGAAAGGCGGGGTAATGCCTCTGGCAAGAAACATAGTGAACCTC
 
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rJMFF027E04+          GCCTCTCATGTCGAAAGGAGGCTTACGATGGGAAAGAAGGGTTACGGGAGGGTGAAAGAA
rJMSF033C03+          GCCTCTCATGTCGAAAGGAGGCTTACGATGGGAAAGAAGGGTTACGGGAGGGTGAAAGAA
rJMFF044P03+          GCCTCTCATGTCGAAAGGAGGCTTACGATGGGAAAGAAGGGTTACGGGAGGGTGAAAGAA
rJMSF042C14+          GCCTCTCATGTCGAAAGGAGGCTTACGATGGGAAAGAAGGGTTACGGGAGGGTGAAAGAA
                      ____________________________________________________________
consensus             GCCTCTCATGTCGAAAGGAGGCTTACGATGGGAAAGAAGGGTTACGGGAGGGTGAAAGAA
 
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rJMFF027E04+          GTATTTTTGGAGCAGCATATGGAAGAACGGATTGGTGGCGTTTTGCAGGATGTGCTGCAA
rJMSF033C03+          GTATTTTTGGAGCAGCATATGGAAGAACGGATTGGTGGCGTTTTGCAGGATGTGCTGCAA
rJMFF044P03+          GTATTTTTGGAGCAGCATATGGAAGAACGGATTGGTGGCGTTTTGCAGGATGTGCTGCAA
rJMSF042C14+          GTATTTTTGGAGCAGCATATGGAAGAACGGATTGGTGGCGTTTTGCAGGATGTGCTGCAA
                      ____________________________________________________________
consensus             GTATTTTTGGAGCAGCATATGGAAGAACGGATTGGTGGCGTTTTGCAGGATGTGCTGCAA
 
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rJMFF027E04+          AGGGCGAAGAGTGCTAAGAACAAAAGATCATAGACTGTATTGTATGTAGTAGTTCCAGGC
rJMSF033C03+          AGGGCGAAGAGTGCTAAGAACAAAAGATCATAGACTGTATTGTATGTAGTAGTTCCAGGC
rJMFF044P03+          AGGGCGAAGAGTGCTAAGAACAAAAGATCATAGACTGTATTGTATGTAGTAGTTCCAGGC
rJMSF042C14+          AGGGCGAAGAGTGCTAAGAACAAAAGATCATAGACTGTATTGTATGTAGTAGTTCCAGGC
                      ____________________________________________________________
consensus             AGGGCGAAGAGTGCTAAGAACAAAAGATCATAGACTGTATTGTATGTAGTAGTTCCAGGC
 
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rJMFF027E04+          TTTCATTTCTTTCTTGGCTGGCAATCAATATTTAATGTTTGCTTGTTTGTACAAACTGTT
rJMSF033C03+          TTTCATTTCTTTCTTGGCTGGCAATCAATATTTAATGTTTGCTTGTTTGTACAAACTGTT
rJMFF044P03+          TTTCATTTCTTTCTTGGCTGGCAATCAATATTTAATGTTTGCTTGTTTGTACAAACTGTT
rJMSF042C14+          TTTCATTTCTTTCTTGGCTGGCAATCAATATTTAATGTTTGCTTGTTTGTACAAACTGTT
                      ____________________________________________________________
consensus             TTTCATTTCTTTCTTGGCTGGCAATCAATATTTAATGTTTGCTTGTTTGTACAAACTGTT
 
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rJMFF027E04+          GCTGGCTGGGCGATTCGGGAAAACCAATTCTATACACAACAAA                 
rJMSF033C03+          GCT                                                         
rJMFF044P03+          GCTGGCTGGGCGATTCGGGAAAACCAATTCTATACACAACAAATTTGAGTT         
rJMSF042C14+          GCTGGCTGGGCGATTCGGGAAAACCAATTCTATACACAACAAATTTGAGTTTCAAATAGA
                      ____________________________________________________________
consensus             GCTGGCTGGGCGATTCGGGAAAACCAATTCTATACACAACAAATTTGAGTTTCAAATAGA