Contig 004362:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027E04Sequence564011793 (3)gb|AAO26684.1|AF478370_12e-62gag-pol polyprotein [Vitis vinifera]756004362 (5)ref|XP_004232438.1|209PREDICTED: uncharacterized protein LOC101268534 [Solanum lycopersicum]
JMFF044P03Sequence638011793 (3)gb|AAO26684.1|AF478370_14e-62gag-pol polyprotein [Vitis vinifera]615004362 (5)ref|XP_004232438.1|140PREDICTED: uncharacterized protein LOC101268534 [Solanum lycopersicum]
JMSF033C03Sequence641009501 (3)ref|XP_009773504.1|113PREDICTED: uncharacterized protein LOC104223722 [Nicotiana sylvestris]692004362 (5)ref|XP_009773658.1|318PREDICTED: uncharacterized protein LOC104223852, partial [Nicotiana sylvestris]
JMSF042C14Sequence778009501 (3)ref|XP_009773504.1|174PREDICTED: uncharacterized protein LOC104223722 [Nicotiana sylvestris]801004362 (5)ref|XP_009773658.1|330PREDICTED: uncharacterized protein LOC104223852, partial [Nicotiana sylvestris]
JMSF048J14Sequence685009501 (3)ref|XP_009773504.1|129PREDICTED: uncharacterized protein LOC104223722 [Nicotiana sylvestris]774004362 (5)gb|KDO71027.1|8e-121hypothetical protein CISIN_1g011779mg [Citrus sinensis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF048J14+ CATGAAATGCGAGGCCACTACTTCCATCTTGACTATGTAAAACATCTTCCACTTGTTG
                      ____________________________________________________________
consensus CATGAAATGCGAGGCCACTACTTCCATCTTGACTATGTAAAACATCTTCCACTTGTTG
 
. : . : . : . : . : . :
rJMSF048J14+ CTGGTGCAATGATTGATTCACATGTAACAGCAGAATACTGGAAGAATAGGACAGCAGAAC
                      ____________________________________________________________
consensus CTGGTGCAATGATTGATTCACATGTAACAGCAGAATACTGGAAGAATAGGACAGCAGAAC
 
. : . : . : . : . : . :
rJMSF048J14+ GCCTAAGGATTAAAATGCCCAAAACCTATGTTGTTCACCTTGGGAATAGCAAGGAGCTAA
                      ____________________________________________________________
consensus GCCTAAGGATTAAAATGCCCAAAACCTATGTTGTTCACCTTGGGAATAGCAAGGAGCTAA
 
. : . : . : . : . : . :
rJMSF048J14+ TGGAAGTTGCTGAAGATAGTGTTGCAAAAAGGATTTTGCGGGAACATGTTCGTGAGTCAC
rJMSF042C14+ GGGAACATGTTCGTGAGTCAC
                      ____________________________________________________________
consensus TGGAAGTTGCTGAAGATAGTGTTGCAAAAAGGATTTTGCGGGAACATGTTCGTGAGTCAC
 
. : . : . : . : . : . :
rJMSF048J14+ TTGGAGTTAG-AAATGAGGATATACTATTTGCTCTGATAAACAGTGTTTCTCGTGGGAAG
rJMFF027E04+ AAATGAGGATATACTATTTGCTCTGATAAACAGTGTTTCTCGTGGGAAG
rJMSF033C03+ CTCTGATAAACAGTGTTTCTCGTGGGAAG
rJMSF042C14+ TTGGAGTTAGNAAATGAGGATATACTATTTGCTCTGATAAACAGTGTTTCTCGTGGGAAG
                      ____________________________________________________________
consensus TTGGAGTTAGNAAATGAGGATATACTATTTGCTCTGATAAACAGTGTTTCTCGTGGGAAG
 
. : . : . : . : . : . :
rJMSF048J14+ GGTCAAGACTTATTTTTGCATTCCTTCTATGAGAGCTTGCAATTGATTCAACAAAAGAAG
rJMFF027E04+ GGTCAAGACTTATTTTTGCATTCCTTCTATGAGAGCTTGCAATTGATTCAACAAAAGAAG
rJMSF033C03+ GGTCAAGACTTATTTTTGCATTCCTTCTATGAGAGCTTGCAATTGATTCAACAAAAGAAG
rJMSF042C14+ GGTCAAGACTTATTTTTGCATTCCTTCTATGAGAGCTTGCAATTGATTCAACAAAAGAAG
                      ____________________________________________________________
consensus GGTCAAGACTTATTTTTGCATTCCTTCTATGAGAGCTTGCAATTGATTCAACAAAAGAAG
 
. : . : . : . : . : . :
rJMSF048J14+ TTACAATTGCCAACTGTCCATGCTGTTGTTGTAGGAAGTGATTTGACTACTCAAAGCAAA
rJMFF027E04+ TTACAATTGCCAACTGTCCATGCTGTTGTTGTAGGAAGTGATTTGACTACTCAAAGCAAA
rJMSF033C03+ TTACAATTGCCAACTGTCCATGCTGTTGTTGTAGGAAGTGATTTGACTACTCAAAGCAAA
rJMFF044P03+ TAGGAAGTGATTTGACTACTCAAAGCAAA
rJMSF042C14+ TTACAATTGCCAACTGTCCATGCTGTTGTTGTAGGAAGTGATTTGACTACTCAAAGCAAA
                      ____________________________________________________________
consensus TTACAATTGCCAACTGTCCATGCTGTTGTTGTAGGAAGTGATTTGACTACTCAAAGCAAA
 
. : . : . : . : . : . :
rJMSF048J14+ TTTGAGTTAGAGCTTAGGAACTTTGTGCAACTTAAGAAGATCCAAAACTATGTGCATTTT
rJMFF027E04+ TTTGAGTTAGAGCTTAGGAACTTTGTGCAACTTAAGAAGATCCAAAACTATGTGCATTTT
rJMSF033C03+ TTTGAGTTAGAGCTTAGGAACTTTGTGCAACTTAAGAAGATCCAAAACTATGTGCATTTT
rJMFF044P03+ TTTGAGTTAGAGCTTAGGAACTTTGTGCAACTTAAGAAGATCCAAAACTATGTGCATTTT
rJMSF042C14+ TTTGAGTTAGAGCTTAGGAACTTTGTGCAACTTAAGAAGATCCAAAACTATGTGCATTTT
                      ____________________________________________________________
consensus TTTGAGTTAGAGCTTAGGAACTTTGTGCAACTTAAGAAGATCCAAAACTATGTGCATTTT
 
. : . : . : . : . : . :
rJMSF048J14+ GTCAATAAGACTCTGACAGTTGCACCATATCTTGCTGCAATTGATGTACTTGTGCAAAAT
rJMFF027E04+ GTCAATAAGACTCTGACAGTTGCACCATATCTTGCTGCAATTGATGTACTTGTGCAAAAT
rJMSF033C03+ GTCAATAAGACTCTGACAGTTGCACCATATCTTGCTGCAATTGATGTACTTGTGCAAAAT
rJMFF044P03+ GTCAATAAGACTCTGACAGTTGCACCATATCTTGCTGCAATTGATGTACTTGTGCAAAAT
rJMSF042C14+ GTCAATAAGACTCTGACAGTTGCACCATATCTTGCTGCAATTGGTGTACTTGTGCAAAAT
                      ____________________________________________________________
consensus GTCAATAAGACTCTGACAGTTGCACCATATCTTGCTGCAATTGATGTACTTGTGCAAAAT
 
. : . : . : . : . : . :
rJMSF048J14+ TCACAGGCCCGGGGAGAATGTTTTGGTAGGATTACCATTGAAGCCATGGCATTTCAGCTT
rJMFF027E04+ TCACAGGCCCGGGGAGAATGTTTTGGTAGGATTACCATTGAAGCCATGGCATTTCAGCTT
rJMSF033C03+ TCACAGGCCCGGGGAGAATGTTTTGGTAGGATTACCATTGAAGCCATGGCATTTCAGCTT
rJMFF044P03+ TCACAGGCCCGGGGAGAATGTTTTGGTAGGATTACCATTGAAGCCATGGCATTTCAGCTT
rJMSF042C14+ TCACAGGCCCGGGGAGAATGTTTTGGTAGGATTACCATTGAAGCCATGGCATTTCAGCTT
                      ____________________________________________________________
consensus TCACAGGCCCGGGGAGAATGTTTTGGTAGGATTACCATTGAAGCCATGGCATTTCAGCTT
 
. : . : . : . : . : . :
rJMSF048J14+ CCTGTGTTG
rJMFF027E04+ CCTGTGTT-------GCAGCTGGTGGTACTCGAGAAGTCGTTCTAAACGGAACAACTGGG
rJMSF033C03+ CCTGTGTTGGGAACAGCAGCTGGTGGTACTCGAGAAATCGTTCTAAACGGAACAACTGGG
rJMFF044P03+ CCTGTGTT-------GCAGCTGGTGGTACTCGAGAAGTCGTTCTAAACGGAACAACTGGG
rJMSF042C14+ CCTGTGTTGGGAACAGCAGCTGGTGGTACTCGAGAAATCGTTCTAAACGGAACAACTGGG
                      ____________________________________________________________
consensus CCTGTGTTGGGAACAGCAGCTGGTGGTACTCGAGAAGTCGTTCTAAACGGAACAACTGGG
 
. : . : . : . : . : . :
rJMFF027E04+ TTACTGCACCCCGTGGGGAAAGGCGGGGTAATGCCTCTGGCAAGAAACATAGTGAACCTC
rJMSF033C03+ TTACTGCACCCCGTGGGGAAAGGCGGGGTAATGCCTCTGGCAAGAAACATAGTGAACCTC
rJMFF044P03+ TTACTGCACCCCGTGGGGAAAGGCGGGGTAATGCCTCTGGCAAGAAACATAGTGAACCTC
rJMSF042C14+ TTACTGCACCCCGTGGGGAAAGGCGGGGTAATGCCTCTGGCAAGAAACATAGTGAACCTC
                      ____________________________________________________________
consensus TTACTGCACCCCGTGGGGAAAGGCGGGGTAATGCCTCTGGCAAGAAACATAGTGAACCTC
 
. : . : . : . : . : . :
rJMFF027E04+ GCCTCTCATGTCGAAAGGAGGCTTACGATGGGAAAGAAGGGTTACGGGAGGGTGAAAGAA
rJMSF033C03+ GCCTCTCATGTCGAAAGGAGGCTTACGATGGGAAAGAAGGGTTACGGGAGGGTGAAAGAA
rJMFF044P03+ GCCTCTCATGTCGAAAGGAGGCTTACGATGGGAAAGAAGGGTTACGGGAGGGTGAAAGAA
rJMSF042C14+ GCCTCTCATGTCGAAAGGAGGCTTACGATGGGAAAGAAGGGTTACGGGAGGGTGAAAGAA
                      ____________________________________________________________
consensus GCCTCTCATGTCGAAAGGAGGCTTACGATGGGAAAGAAGGGTTACGGGAGGGTGAAAGAA
 
. : . : . : . : . : . :
rJMFF027E04+ GTATTTTTGGAGCAGCATATGGAAGAACGGATTGGTGGCGTTTTGCAGGATGTGCTGCAA
rJMSF033C03+ GTATTTTTGGAGCAGCATATGGAAGAACGGATTGGTGGCGTTTTGCAGGATGTGCTGCAA
rJMFF044P03+ GTATTTTTGGAGCAGCATATGGAAGAACGGATTGGTGGCGTTTTGCAGGATGTGCTGCAA
rJMSF042C14+ GTATTTTTGGAGCAGCATATGGAAGAACGGATTGGTGGCGTTTTGCAGGATGTGCTGCAA
                      ____________________________________________________________
consensus GTATTTTTGGAGCAGCATATGGAAGAACGGATTGGTGGCGTTTTGCAGGATGTGCTGCAA
 
. : . : . : . : . : . :
rJMFF027E04+ AGGGCGAAGAGTGCTAAGAACAAAAGATCATAGACTGTATTGTATGTAGTAGTTCCAGGC
rJMSF033C03+ AGGGCGAAGAGTGCTAAGAACAAAAGATCATAGACTGTATTGTATGTAGTAGTTCCAGGC
rJMFF044P03+ AGGGCGAAGAGTGCTAAGAACAAAAGATCATAGACTGTATTGTATGTAGTAGTTCCAGGC
rJMSF042C14+ AGGGCGAAGAGTGCTAAGAACAAAAGATCATAGACTGTATTGTATGTAGTAGTTCCAGGC
                      ____________________________________________________________
consensus AGGGCGAAGAGTGCTAAGAACAAAAGATCATAGACTGTATTGTATGTAGTAGTTCCAGGC
 
. : . : . : . : . : . :
rJMFF027E04+ TTTCATTTCTTTCTTGGCTGGCAATCAATATTTAATGTTTGCTTGTTTGTACAAACTGTT
rJMSF033C03+ TTTCATTTCTTTCTTGGCTGGCAATCAATATTTAATGTTTGCTTGTTTGTACAAACTGTT
rJMFF044P03+ TTTCATTTCTTTCTTGGCTGGCAATCAATATTTAATGTTTGCTTGTTTGTACAAACTGTT
rJMSF042C14+ TTTCATTTCTTTCTTGGCTGGCAATCAATATTTAATGTTTGCTTGTTTGTACAAACTGTT
                      ____________________________________________________________
consensus TTTCATTTCTTTCTTGGCTGGCAATCAATATTTAATGTTTGCTTGTTTGTACAAACTGTT
 
. : . : . : . : . : . :
rJMFF027E04+ GCTGGCTGGGCGATTCGGGAAAACCAATTCTATACACAACAAA
rJMSF033C03+ GCT
rJMFF044P03+ GCTGGCTGGGCGATTCGGGAAAACCAATTCTATACACAACAAATTTGAGTT
rJMSF042C14+ GCTGGCTGGGCGATTCGGGAAAACCAATTCTATACACAACAAATTTGAGTTTCAAATAGA
                      ____________________________________________________________
consensus GCTGGCTGGGCGATTCGGGAAAACCAATTCTATACACAACAAATTTGAGTTTCAAATAGA