Contig 004361:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012L11Sequence491012134 (3)ref|XP_009601294.1|2e-28PREDICTED: uncharacterized protein LOC104096614 isoform X3 [Nicotiana tomentosi740004361 (2)ref|XP_006360715.1|283PREDICTED: uncharacterized protein LOC102580131 [Solanum tuberosum]
JMSF042A14Sequence459012134 (3)ref|XP_009601294.1|8e-06PREDICTED: uncharacterized protein LOC104096614 isoform X3 [Nicotiana tomentosi654004361 (2)ref|XP_010053139.1|117PREDICTED: uncharacterized protein LOC104441662 [Eucalyptus grandis] gb|KCW77397

Alignment

This contig is upended


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rJMSF012L11+                                                 CTAAACAATCTAGTACTTCCA
                      ____________________________________________________________
consensus                                                    CTAAACAATCTAGTACTTCCA
 
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rJMSF012L11+          CAGTTAAGCAAGCTTCCTCAAAGATTTGTTGATAGTATGGCGATCAGGCAACAACTTTTA
                      ____________________________________________________________
consensus             CAGTTAAGCAAGCTTCCTCAAAGATTTGTTGATAGTATGGCGATCAGGCAACAACTTTTA
 
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rJMSF012L11+          TCACAGTATGATGTGCTCCAATCTCGGATAAAGGAATTGAAAGGAACTGCTGAAAATGAG
                      ____________________________________________________________
consensus             TCACAGTATGATGTGCTCCAATCTCGGATAAAGGAATTGAAAGGAACTGCTGAAAATGAG
 
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rJMSF012L11+          GTTTGGATGTTGGCTCGCATGTGCCAGTTGGAGAACAAAATTTCTGCTGTTGGAGAACCT
                      ____________________________________________________________
consensus             GTTTGGATGTTGGCTCGCATGTGCCAGTTGGAGAACAAAATTTCTGCTGTTGGAGAACCT
 
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rJMSF012L11+          TCTTACAGTGCTCGGAAAAGCAGAGTGAAAAGGGTGCGCGAAAGCTTGGAAAGTTCCCTT
                      ____________________________________________________________
consensus             TCTTACAGTGCTCGGAAAAGCAGAGTGAAAAGGGTGCGCGAAAGCTTGGAAAGTTCCCTT
 
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rJMSF012L11+          AAGAGGAGGATAGAATTAATTGAAAGCTATGCAAGGATATCTTCGATGATTGAAATCGAG
rJMSF042A14+                                             GATATCTTCGATGATTGAAATCGAG
                      ____________________________________________________________
consensus             AAGAGGAGGATAGAATTAATTGAAAGCTATGCAAGGATATCTTCGATGATTGAAATCGAG
 
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rJMSF012L11+          GTAGAGTTGGATTCTGATGTTCTTGCTGCCGAAGCAGCAAGCAATGTGGAAAGTATTGCT
rJMSF042A14+          GTAGAGTTGGATTCTGATGTTCTTGCTGCCGAAGCAGCAAGCAATGTGGAAAGTATTGCT
                      ____________________________________________________________
consensus             GTAGAGTTGGATTCTGATGTTCTTGCTGCCGAAGCAGCAAGCAATGTGGAAAGTATTGCT
 
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rJMSF012L11+          GATCAGATACAACAAATCATGGAGCTTGAAAAGCTTGAAGAAAAATGGAGACTCCAAGCA
rJMSF042A14+          GATCAGATACAACAAATCATGGAGCTTGAAAAGCTTGAAGAAAAATGGAGACTCCAAGCA
                      ____________________________________________________________
consensus             GATCAGATACAACAAATCATGGAGCTTGAAAAGCTTGAAGAAAAATGGAGACTCCAAGCA
 
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rJMSF012L11+          GAGGCAAATGATGAGGCTGAAAGACTCCTTAGCTCTGAACCCTTGTCGGTGGAAAAGGTG
rJMSF042A14+          GAGGCAAATGATGAGGCTGAAAGACTCCTTAGCTCTGAACCCTTGTCGGTGGAAAAGGTG
                      ____________________________________________________________
consensus             GAGGCAAATGATGAGGCTGAAAGACTCCTTAGCTCTGAACCCTTGTCGGTGGAAAAGGTG
 
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rJMSF012L11+          CTAGACAGATAACTGCTGTACATTCATACCCAAGGGTTGACCGACAAACTGGAGAAATGG
rJMSF042A14+          CTAGACAGATAACTGCTGTACATTCATACCCAAGGGTTGACCGACAAACTGGAGAAATGG
                      ____________________________________________________________
consensus             CTAGACAGATAACTGCTGTACATTCATACCCAAGGGTTGACCGACAAACTGGAGAAATGG
 
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rJMSF012L11+          CGGCAAACTATTGAGATCCAGAGCCCTTGAAATTTCTGATGTAAGTCCAGCTCTCCAACT
rJMSF042A14+          CGGCAAACTATTGAGATCCAGAGCCCTTGAAATTTCTGATGTAAGTCCAGCTCTCCAACT
                      ____________________________________________________________
consensus             CGGCAAACTATTGAGATCCAGAGCCCTTGAAATTTCTGATGTAAGTCCAGCTCTCCAACT
 
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rJMSF012L11+          GCATACGATACGCCATTCATTTCCTGAAGATTAAATGTTAAAACATGGAAATCTTTGTTC
rJMSF042A14+          GCATACGATACGCCATTCATTTCCTGAAGATTAAATGTTAAAACATGGAAATCTTTGTTC
                      ____________________________________________________________
consensus             GCATACGATACGCCATTCATTTCCTGAAGATTAAATGTTAAAACATGGAAATCTTTGTTC
 
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rJMSF012L11+          GAGGAGATAGGTGTTTGTTTGTTCATACATGTTTTTATTTTGTAACGAATGAATCTAAA 
rJMSF042A14+          GAGGAGATAGGTGTTTGTTTGTTCATACATGTTTTTATTTTGTAACGAATGAATCTAAAG
                      ____________________________________________________________
consensus             GAGGAGATAGGTGTTTGTTTGTTCATACATGTTTTTATTTTGTAACGAATGAATCTAAAG