| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMSF011P10 | Sequence | 226 | 009506 (4) | 720 | 004359 (5) | ref|XP_011081192.1| | 5e-98 | PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic-like [Sesamum ind | |||
| JMSF041M22 | Sequence | 574 | 004359 (5) | gb|AFK37772.1| | 3e-48 | unknown [Lotus japonicus] | |||||
| JMSF041N22 | Sequence | 762 | 009506 (4) | ref|XP_002284920.3| | 1e-45 | PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis | 613 | 004359 (5) | ref|XP_011081192.1| | 9e-65 | PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic-like [Sesamum ind |
| JMSF042K19 | Sequence | 801 | 009506 (4) | ref|XP_002284920.3| | 3e-71 | PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic isoform X1 [Vitis | 729 | 004359 (5) | ref|XP_011081192.1| | 6e-98 | PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic-like [Sesamum ind |
| JMSF049F07 | Sequence | 708 | 009506 (4) | dbj|BAJ16226.1| | 9e-27 | sodium-dependent pyruvate transporter [Flaveria trinervia] | 777 | 004359 (5) | ref|XP_011081192.1| | 1e-109 | PREDICTED: sodium/pyruvate cotransporter BASS2, chloroplastic-like [Sesamum ind |
This contig is upended
. : . : . : . : . : . :
rJMSF049F07+ GGNCAATGTAGCACTATCTGTTTTTATGACAACGTGT
____________________________________________________________
consensus GGNCAATGTAGCACTATCTGTTTTTATGACAACGTGT
. : . : . : . : . : . :
rJMSF049F07+ TCAACTATTGGGGCTATTCTGATGACTCCACTACTGACTATGCTTTTGGCTGGTCAGCTT
rJMSF011P10+ TGATGACTCCACTACTGACTATGCTTTTGGCTGGTCAGCTT
rJMSF042K19+ TGATGACTCCACTACTGACTATGCTTTTGGCTGGTCAGCTT
____________________________________________________________
consensus TCAACTATTGGGGCTATTCTGATGACTCCACTACTGACTATGCTTTTGGCTGGTCAGCTT
. : . : . : . : . : . :
rJMSF049F07+ GTCCCTGTTGATGCAGTGGGGCTTGCCATCAGCACATTCCAGGTTGTGTTAGTACCAACT
rJMSF011P10+ GTCCCTGTTGATGCAGTGGGGCTTGCCATCAGCACATTCCAGGTTGTGTTAGTACCAACT
rJMSF042K19+ GTCCCTGTTGATGCAGTGGGGCTTGCCATCAGCACATTCCAGGTTGTGTTAGTACCGACT
____________________________________________________________
consensus GTCCCTGTTGATGCAGTGGGGCTTGCCATCAGCACATTCCAGGTTGTGTTAGTACCAACT
. : . : . : . : . : . :
rJMSF049F07+ ATTATTGGAGTGTTATCAAATGAGTATTTCCCCAAGTTCACATCCAAAATAATTACAGTT
rJMSF011P10+ ATTATTGGAGTGTTATCAAATGAGTATTTCCCCAAGTTCACATCCAAAATAATTACAGTT
rJMSF042K19+ ATTATTGGAGTGTTATCAAATGAGTATTTCCCCAAGTTCACATCCAAAATAATTACAGTT
rJMSF041N22+ AAATAATTACAGTT
____________________________________________________________
consensus ATTATTGGAGTGTTATCAAATGAGTATTTCCCCAAGTTCACATCCAAAATAATTACAGTT
. : . : . : . : . : . :
rJMSF049F07+ ACCCCTCTAATTGGAGTTATATTGACAACTCTTCTCTGTGCAAGTCCAATCGGGCAAGTT
rJMSF011P10+ ACCCCTCTAATTGGAGTTATATTGACAACTCTTCTCTGTGCAAGTCCAATCGGGCAAGTT
rJMSF042K19+ ACCCCTCTAATTGGAGTTATATTGACAACTCTTCTCTGTGCAAGTCCAATCGGGCAAGTT
rJMSF041M22+ GACAACTCTCCTNTGTGCAAGTTCAATCGGNCAAGTN
rJMSF041N22+ ACCCCTCTAATTGGAGTTATATTGACAACTCTTCTCTGTGCAAGTCCAATCGGGCAAGTT
____________________________________________________________
consensus ACCCCTCTAATTGGAGTTATATTGACAACTCTTCTCTGTGCAAGTCCAATCGGGCAAGTT
. : . : . : . : . : . :
rJMSF049F07+ GCAGATGTCTTGAAAACTCAGGGCGCACAACTACTCTTCCCAGTCGCCCTCTTACATGCT
rJMSF011P10+ GCAGATGTCTTGAAAACTCAGGGCGCACAACTACTCTTCCCAGTCGCCCTCTTACATGCT
rJMSF042K19+ GCAGATGTCTTGAAAACTCAGGGCGCACAACTACTCTTCCCAGTCGCCCTCTTACATGCT
rJMSF041M22+ GCAGATGTCTCGAAAACTCAGGGCGCACAACTACTCTTCCCAGTCGCCNTCNTACATGCT
rJMSF041N22+ GCAGATGTCTTGAAAACTCAGGGCGCACAACTACTCTTCCCAGTCGCCCTCTTACATGCT
____________________________________________________________
consensus GCAGATGTCTTGAAAACTCAGGGCGCACAACTACTCTTCCCAGTCGCCCTCTTACATGCT
. : . : . : . : . : . :
rJMSF049F07+ GCCGCCTTTTTTCTTGGTTACTGGATCTCAAAGCTGTTTTTTGGCGAATCAACTTCCCGA
rJMSF011P10+ GCCGCCTTTTTTCTTGGTTACTGGATCTCAAAGCTGTTTTTTGGCGAATCAACCTCCCGA
rJMSF042K19+ GCCGCCTTTTTTCTTGGTTACTGGATCTCAAAGCTGTTTTTTGGCGAATCAACCTCCCGA
rJMSF041M22+ GCCGCCTTTTTTCTTGGNTACTGGATCTCAAAGCTGTTTTTTGGCGAATCAACCTCCCGA
rJMSF041N22+ GCCGCCTTTTTTCTTGGTTACTGGATCTCAAAGCTGTTTTTTGGCGAATCAACCTCCCGA
____________________________________________________________
consensus GCCGCCTTTTTTCTTGGTTACTGGATCTCAAAGCTGTTTTTTGGCGAATCAACCTCCCGA
. : . : . : . : . : . :
rJMSF049F07+ ACCATTTCAATTGAATGCGGGATGCAGAGTTCTGCACTAGGATTTCTACTAGCACAAAAG
rJMSF011P10+ ACCATTTCAATTGAATGCGGGATGCAGAGTTCTGCACTAGGATTTCTACTAGCACAAAAG
rJMSF042K19+ ACCATTTCAATTGAATGCGGGATGCAGAGTTCTGCACTAGGATTTCTACTAGCACAAAAG
rJMSF041M22+ ACCATTTCAATTGAATGCGGGATGCAGAGTTCTGCNCTAGGATTTCTACTAGCACAAAAG
rJMSF041N22+ ACCATTTCAATTGAATGCGGGATGCAGAGTTCTGCACTAGGATTTCTACTAGCACAAAAG
____________________________________________________________
consensus ACCATTTCAATTGAATGCGGGATGCAGAGTTCTGCACTAGGATTTCTACTAGCACAAAAG
. : . : . : . : . : . :
rJMSF049F07+ CACTTCAAAAACCCGCTAGTTGCTGTACCCTCTGCAGTGAGCGTTGTTTGCATGGCGCTC
rJMSF011P10+ CACTTCAAAAACCCGCTAGTTGCTGTACCCTCTGCAGTGAGCGTTGTTTGCATGGCGCTC
rJMSF042K19+ CACTTCAAAAACCCGCTAGTTGCTGTACCCTCTGCAGTGAGCGTTGTTTGCATGGCGCTC
rJMSF041M22+ CANTTCAAAAACCCGCTAGTTGCTGTACCCTNNGCAGTGAGCGTTGTTTGCATGGCGCTC
rJMSF041N22+ CACTTCAAAAACCCGCTAGTTGCTGTACCCTCTGCAGTGAGCGTTGTTTGCATGGCGCTC
____________________________________________________________
consensus CACTTCAAAAACCCGCTAGTTGCTGTACCCTCTGCAGTGAGCGTTGTTTGCATGGCGCTC
. : . : . : . : . : . :
rJMSF049F07+ GGTGGAAGCGCCCTGGCCGTCTACTGGAGGAACCAGGCGATTCGCGTTGATGACAAGGAT
rJMSF011P10+ GGTGGAAGCGCCCTGGCCGTCTACTGGAGGAACCAGGCGATTCGCGTTGATGACAAGGAT
rJMSF042K19+ GGTGGAAGCGCCCTGGCCGTCTACTGGAGGAACCAGGCGATTCGCGTTGATGACAAGGAT
rJMSF041M22+ GGTGGAAGCGCCCTGGCCGTCTACCGGAGGAACCAGGCGATTCGCGTNGATGACAAGGAT
rJMSF041N22+ GGTGGAAGCGCCCTGGCCGTCTACTGGAGGAACCAGGCGATTCGCGTTGATGACAAGGAT
____________________________________________________________
consensus GGTGGAAGCGCCCTGGCCGTCTACTGGAGGAACCAGGCGATTCGCGTTGATGACAAGGAT
. : . : . : . : . : . :
rJMSF049F07+ GACTTCAAGGAATAGAAGTCTGCTACTTCTCCTGTGTGTTTGTGTTTATCAAATCTTAGA
rJMSF011P10+ GACTTCAAGGAATAGAAGTCTGCTACTTCTCCTGTGTGTTTGTGTTTATCAAATCTTAGA
rJMSF042K19+ GACTTCAAGGAATAGAAGTCTGCTACTTCTCCTGTGTGTTTGTGTTTATCAAATCTTAGA
rJMSF041M22+ GACTTCAAGGAATAGAAGTCTGCTACTTCTCCTGTGTGTTNGTGTTTATCAAATCTTAGA
rJMSF041N22+ GACTTCAAGGAATAGAAGTCTGCTACTTCTCCTGTGTGTTTGTGTTTATCAAATCTTAGA
____________________________________________________________
consensus GACTTCAAGGAATAGAAGTCTGCTACTTCTCCTGTGTGTTTGTGTTTATCAAATCTTAGA
. : . : . : . : . : . :
rJMSF049F07+ CTAGAGGATGAGTAGCTTGTCACTACATAGAGTGAGTAGTTAATTGGGTATATTATTGTT
rJMSF011P10+ CTAGAGGATGAGTAGCTTGTCACTACATAGAGTGAGTAGTTAATTGGGTATATTATTGTT
rJMSF042K19+ CTAGAGGATGAGTAGCTTGTCACTACATAGAGTGAGTAGTTAATTGGGTATATTATTGTT
rJMSF041M22+ CTAGAGGATGAGTAGCTTGTCACTACATAGAGTGAGTAGTTAATTGGGTATATTATTGTT
rJMSF041N22+ CTAGAGGATGAGTAGCTTGTCACTACATAGAGTGAGTAGTTAATTGGGTATATTATTGTT
____________________________________________________________
consensus CTAGAGGATGAGTAGCTTGTCACTACATAGAGTGAGTAGTTAATTGGGTATATTATTGTT
. : . : . : . : . : . :
rJMSF049F07+ ACTAAATGTTTGTAGTTTATTTTTCACCAAATTTTAGAAGTTTTGGTATAATTGTTACCA
rJMSF011P10+ ACTAAATGTTTGTAGTTTATTTTTCACCAAATTTTAGAAGTTTTGGTATAATTGTTA-CA
rJMSF042K19+ ACTAAATGTTTGTAGTTTATTTTTCACCAAATTTTAGAAGTTTTGGTATAATTGTTA-CA
rJMSF041M22+ ACTAAATGTTCGTAGTTTATTTTTCACCAAATTTTAGAAGTTTTGGTATAATTGNTA-CA
rJMSF041N22+ ACTAAATGTTTGTAGTTTATTTTTCACCAAATTTTAGAAGTTTTGGTATAATTGTTA-CA
____________________________________________________________
consensus ACTAAATGTTTGTAGTTTATTTTTCACCAAATTTTAGAAGTTTTGGTATAATTGTTA-CA
. : . : . : . : . : . :
rJMSF049F07+ AAGTGTGAATATTTAGATTT
rJMSF011P10+ AAGTGTGAATATTTAGATTT
rJMSF042K19+ AAGTGTGAATATTTAGATTTTTCCTGCCA
rJMSF041M22+ AAGTGTGAATATCTAGATTTTTCCTGCCAATAAGCCAAAACAAAATGAATNACAAAAG
rJMSF041N22+ AAGTGTGAATATTTAGATTTTTCCTGCCAATAAGCCAAAACAAAATGAATAACAAAAGTT
____________________________________________________________
consensus AAGTGTGAATATTTAGATTTTTCCTGCCAATAAGCCAAAACAAAATGAATAACAAAAGTT