| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF031P06 | Sequence | 644 | 009284 (4) | ref|XP_002309560.2| | 1e-47 | hypothetical protein POPTR_0006s25880g [Populus trichocarpa] gb|EEE93083.2| hypo | 699 | 004356 (3) | ref|XP_009627765.1| | 165 | PREDICTED: uncharacterized protein LOC104118259 [Nicotiana tomentosiformis] |
| JMSF019A21 | Sequence | 429 | 009284 (4) | ref|XP_002309560.2| | 4e-05 | hypothetical protein POPTR_0006s25880g [Populus trichocarpa] gb|EEE93083.2| hypo | 786 | 004356 (3) | ref|XP_009623066.1| | 206 | PREDICTED: uncharacterized protein LOC104114346 [Nicotiana tomentosiformis] |
| JMSF041H10 | Sequence | 766 | 009284 (4) | ref|XP_002309560.2| | 4e-70 | hypothetical protein POPTR_0006s25880g [Populus trichocarpa] gb|EEE93083.2| hypo | 707 | 004356 (3) | emb|CDP16156.1| | 2e-45 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
rJMSF019A21+ GTNTGCAGAT
____________________________________________________________
consensus GTNTGCAGAT
. : . : . : . : . : . :
rJMSF019A21+ CAGCCAGAACTACACAACAACTTGCTCAACTGTGTACTGGGGGGTGAATCTGTTGCAGAT
____________________________________________________________
consensus CAGCCAGAACTACACAACAACTTGCTCAACTGTGTACTGGGGGGTGAATCTGTTGCAGAT
. : . : . : . : . : . :
rJMSF019A21+ CCCAGTTTGTTTAGGGGTGAGTTCATTTGAAGCGTTTGGGCTGTACAAAGGGTGGAGAAA
rJMFF031P06+ GAGTTCATTTGAAGCGTTTGGGCTGTACAAAGGGTGGAGAAA
rJMSF041H10+ GAGTTCATTTGAAGCGTTTGGGCTGTACAAAGGGTGGAGAAA
____________________________________________________________
consensus CCCAGTTTGTTTAGGGGTGAGTTCATTTGAAGCGTTTGGGCTGTACAAAGGGTGGAGAAA
. : . : . : . : . : . :
rJMSF019A21+ GATATCATCGAAGAGTGGAGATTCAAGCTCCAAATTGCGAGCAGGGCAGCTCATTGTTTT
rJMFF031P06+ GATATCATCGAAGAGTGGAGATTCAAGCTCCAAATTGCGAGCAGGGCAGCTCATTGTTTT
rJMSF041H10+ GATATCATCGAAGAGTGGAGATTCAAGCTCCAAATTGCGAGCAGGGCAGCTCATTGTTTT
____________________________________________________________
consensus GATATCATCGAAGAGTGGAGATTCAAGCTCCAAATTGCGAGCAGGGCAGCTCATTGTTTT
. : . : . : . : . : . :
rJMSF019A21+ CTGCTTCTTTGGATTGGTGGCTGGTACTGTTGGAGCACTGCTTGGTCTTGGTGGTGGCTT
rJMFF031P06+ CTGCTTCTTTGGATTGGTGGCTGGTACTGTTGGAGCACTGCTTGGTCTTGGTGGTGGCTT
rJMSF041H10+ CTGCTTCTTTGGATTGGTGGCTGGTACTGTTGGAGCACTGCTTGGTCTTGGTGGTGGCTT
____________________________________________________________
consensus CTGCTTCTTTGGATTGGTGGCTGGTACTGTTGGAGCACTGCTTGGTCTTGGTGGTGGCTT
. : . : . : . : . : . :
rJMSF019A21+ CATCATGGGTCCTCTTTTCCTCGAGCTCGGTGTCCCTCCTGAGGTTTCAACTGCAACATC
rJMFF031P06+ CATCATGGGTCCTCTTTTCCTCGAGCTCGGTGTCCCTCCTGAGGTTTCAACTGCAACATC
rJMSF041H10+ CATCATGGGTCCTCTTTTCCTCGAGCTCGGTGTCCCTCCTGAGGTTTCAACTGCAACATC
____________________________________________________________
consensus CATCATGGGTCCTCTTTTCCTCGAGCTCGGTGTCCCTCCTGAGGTTTCAACTGCAACATC
. : . : . : . : . : . :
rJMSF019A21+ TACCTTTGTAATGATGTTCACATCATCAATTGCGGTTGTAGAATACTACCTTCTCAAGCG
rJMFF031P06+ TACCTTTGTAATGATGTTCACATCATCAATTGCGGTTGTAGAATACTACCTTCTCAAGCG
rJMSF041H10+ TACCTTTGTAATGATGTTCACATCATCAATTGCGGTTGTAGAATACTACCTTCTCAAGCG
____________________________________________________________
consensus TACCTTTGTAATGATGTTCACATCATCAATTGCGGTTGTAGAATACTACCTTCTCAAGCG
. : . : . : . : . : . :
rJMSF019A21+ TTTCCCAGTTCCTTATGCTGTGTGTTTAACTGCCGTGGCAACTGTTGCTGCTTTTGTTGG
rJMFF031P06+ TTTCCCAGTTCCTTATGCTGTGTGTTTAACTGCCGTGGCAACTGTTGCTGCTTTTGTTGG
rJMSF041H10+ TTTCCCAGTTCCTTATGCTGTGTGTTTAACTGCCGTGGCAACTGTTGCTGCTTTTGTTGG
____________________________________________________________
consensus TTTCCCAGTTCCTTATGCTGTGTGTTTAACTGCCGTGGCAACTGTTGCTGCTTTTGTTGG
. : . : . : . : . : . :
rJMSF019A21+ GCAACACGTAGTGAGGAGGGTGATTGCGGCGTTAGGGAGAGCATCGTTAATCATCTTCAC
rJMFF031P06+ GCAACACGTAGTGAGGAGGGTGATTGCGGCGTTAGGGAGAGCATCGTTAATCATCTTCAC
rJMSF041H10+ GCAACACGTAGTGAGGAGGGTGATTGCGGCGTTAGGGAGAGCATCGTTAATCATCTTCAC
____________________________________________________________
consensus GCAACACGTAGTGAGGAGGGTGATTGCGGCGTTAGGGAGAGCATCGTTAATCATCTTCAC
. : . : . : . : . : . :
rJMSF019A21+ CTTGGCCTTCATCATTTTCATAAGTGCAATCTCATTAGGTGGAGTTGGAATCTCAAACAT
rJMFF031P06+ CTTGGCCTTCATCATTTTCATAAGTGCAATCTCATTAGGTGGAGTTGGAATCTCAAACAT
rJMSF041H10+ CTTGGCCTTCATCATTTTCATAAGTGCAATCTCATTAGGTGGAGTTGGAATCTCAAACAT
____________________________________________________________
consensus CTTGGCCTTCATCATTTTCATAAGTGCAATCTCATTAGGTGGAGTTGGAATCTCAAACAT
. : . : . : . : . : . :
rJMSF019A21+ GACAAAGAAGATTGAACACCATCAAAATATGGGGTTTGAAAGCCTTTGCAAGTACAGAGT
rJMFF031P06+ GACAAAGAAGATTGAACACCATCAAAATATGGGGTTTGAAAGCCTTTGCAAGTACAGAGT
rJMSF041H10+ GACAAAGAAGATTGAACACCATCAAAATATGGGGTTTGAAAGCCTTTGCAAGTACAGAGT
____________________________________________________________
consensus GACAAAGAAGATTGAACACCATCAAAATATGGGGTTTGAAAGCCTTTGCAAGTACAGAGT
. : . : . : . : . : . :
rJMSF019A21+ TTAAACCAAACATATATCTTCTCCTACCATGCAAATATGCAATGGTTATGGTTTTATCTA
rJMFF031P06+ TTAAACCAAACATATATCTTCTCCTACCATGCAAATATGCAATGGTTATGGTTTTATCTA
rJMSF041H10+ TTAAACCAAACATATATCTTCTCCTACCATGCAAATATGCAATGGTTATGGTTTTATCTA
____________________________________________________________
consensus TTAAACCAAACATATATCTTCTCCTACCATGCAAATATGCAATGGTTATGGTTTTATCTA
. : . : . : . : . : . :
rJMSF019A21+ TTCAACAAATCATCTTAATTAGCTCAACATAATCTTCCTTCTTTGTCCCCTTAACGTACA
rJMFF031P06+ TTCAACAAATCATCTTAATTAGCTCAACATAATCTTCCTTCTTTGTCCCCTTAACGTACA
rJMSF041H10+ TTCAACAAATCATCTTAATTAGCTCAACATAATCTTCCTTCTTTGTCCCCTTAACGTACA
____________________________________________________________
consensus TTCAACAAATCATCTTAATTAGCTCAACATAATCTTCCTTCTTTGTCCCCTTAACGTACA
. : . : . : . : . : . :
rJMSF019A21+ ACAAAATGGGAAGAAGAATGTTATTTTACCTTTCATGAATTAATCCTAATG
rJMFF031P06+ ACAAAATGGGAAGAAGAATGTTATTTTACCTTTCATGAATTAATCCTAATG
rJMSF041H10+ ACAAAATGGGAAGAAGAATGTTATTTTACCTTTCATGAATTAATCCTAATGTATCATTAA
____________________________________________________________
consensus ACAAAATGGGAAGAAGAATGTTATTTTACCTTTCATGAATTAATCCTAATGTATCATTAA