| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012P04 | Sequence | 560 | 000060 (6) | ref|XP_006366693.1| | 4e-32 | PREDICTED: receptor-like protein kinase HSL1-like [Solanum tuberosum] | 724 | 004355 (3) | ref|XP_009779466.1| | 6e-59 | PREDICTED: receptor-like protein kinase HSL1 [Nicotiana sylvestris] |
| JMFF036L20 | Sequence | 585 | 000060 (6) | ref|XP_006366693.1| | 2e-36 | PREDICTED: receptor-like protein kinase HSL1-like [Solanum tuberosum] | 622 | 004355 (3) | ref|XP_009587881.1| | 4e-38 | PREDICTED: receptor-like protein kinase HSL1 [Nicotiana tomentosiformis] |
| JMSF041C03 | Sequence | 274 | 000060 (6) | 536 | 004355 (3) | ref|XP_011093340.1| | 2e-13 | PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase HSL1 [Sesamum indi | |||
This contig is upended
. : . : . : . : . : . :
rJMFF012P04+ ATC
____________________________________________________________
consensus ATC
. : . : . : . : . : . :
rJMFF012P04+ TTGCACCAGAATATGCATATACAACGAGAGTGAACGAGAAGATTGATATCTATAGCTTCG
____________________________________________________________
consensus TTGCACCAGAATATGCATATACAACGAGAGTGAACGAGAAGATTGATATCTATAGCTTCG
. : . : . : . : . : . :
rJMFF036L20+ GGGAGCCAAACTTCGGGGAGGAGCACACGA
rJMFF012P04+ GGGTGGTGCTGCTGGAGCTCGTGACAGGGAGGGAGCCAAACTTCGGGGAGGAGCACACGA
____________________________________________________________
consensus GGGTGGTGCTGCTGGAGCTCGTGACAGGGAGGGAGCCAAACTTCGGGGAGGAGCACACGA
. : . : . : . : . : . :
rJMFF036L20+ GCCTCGCAGAATGGGCGTGGAAGAACTATGCAGAAGCGAGCAACATCGATGAAATGTTGG
rJMFF012P04+ GCCTCGCAGAATGGGCGTGGAAGAACTATGCAGAAGCGAGCAACATCGATGAAATGTTGG
____________________________________________________________
consensus GCCTCGCAGAATGGGCGTGGAAGAACTATGCAGAAGCGAGCAACATCGATGAAATGTTGG
. : . : . : . : . : . :
rJMFF036L20+ ACGGGGAGATCAAGAAAGCGGGGTTCTTGGACGAGATGAGGACGGTGTTCACTCTCGGGC
rJMFF012P04+ ACGGGGAGATCAAGAAAGCGGGGTTCTTGGACGAGATGAGGACGGTGTTCACTCTCGGGC
____________________________________________________________
consensus ACGGGGAGATCAAGAAAGCGGGGTTCTTGGACGAGATGAGGACGGTGTTCACTCTCGGGC
. : . : . : . : . : . :
rJMFF036L20+ TCATATGCACCAGTGCATCGCCTTCCAGCAGGCCGTCCATGAAAGAAGTCGTGCAGATTC
rJMFF012P04+ TCATATGCACCAGTGCATCGCCTTCCAGCAGGCCGTCCATGAAAGAAGTCGTGCAGATTC
rJMSF041C03+ ATGCACCAGTGCATCGCCTTCCAGCAGGCCGTCCATGAAAGAAGTCGTGCAGATTC
____________________________________________________________
consensus TCATATGCACCAGTGCATCGCCTTCCAGCAGGCCGTCCATGAAAGAAGTCGTGCAGATTC
. : . : . : . : . : . :
rJMFF036L20+ TGCAGAGCTGCAGACCTCTGGATGAGTTCGAGAGGAAGATGTCCGGGAAAAACTGCGATG
rJMFF012P04+ TGCAGAGCTGCAGACCTCTGGATGAGTTCGAGAGGAAGATGTCCGGGAAAAACTGCGATG
rJMSF041C03+ TGCAGAGCTGCAGACCTCTGGATGAGTTCGAGAGGAAGATGTCCGGGAAAAACTGCGATG
____________________________________________________________
consensus TGCAGAGCTGCAGACCTCTGGATGAGTTCGAGAGGAAGATGTCCGGGAAAAACTGCGATG
. : . : . : . : . : . :
rJMFF036L20+ TGGCGCCCCTCCTAGCTCGCAACGACGACAAGTATGTGGCGAGCTATAAACGTAGCTCGA
rJMFF012P04+ TGGCGCCCCTCCTAGCTCGCAACGACGACAAGTATGTGGCGAGCTATAAACGTAGCTCGA
rJMSF041C03+ TGGCGCCCCTCCTAGCTCGCAACGACGACAAGTATGTGGCGAGCTATAAACGTAGCTCGA
____________________________________________________________
consensus TGGCGCCCCTCCTAGCTCGCAACGACGACAAGTATGTGGCGAGCTATAAACGTAGCTCGA
. : . : . : . : . : . :
rJMFF036L20+ GGAAGATTGCTGATGAAAGTGATGATGATAATCTGATGTTCAGTGTGTAACAAACACTGA
rJMFF012P04+ GGAAGATTGCTGATGAAAGTGATGATGATAATCTGATGTTCAGTGTGTAACAAACACTGA
rJMSF041C03+ GGAAGATTGCTGATGAAAGTGATGATGATAATCTGATGTTCAGTGTGTAACAAACACTGA
____________________________________________________________
consensus GGAAGATTGCTGATGAAAGTGATGATGATAATCTGATGTTCAGTGTGTAACAAACACTGA
. : . : . : . : . : . :
rJMFF036L20+ GGTGATTTGGATTGTAATGAAATCATAACACAAGTAGTATTAGAGCAACCACATTAGTGG
rJMFF012P04+ GGTGATTTGGATTGTAATGAAATCATAACACAAGTAGTATTAGAGCAACCACATTAGTGG
rJMSF041C03+ GGTGATTTGGATTGTAATGAAATCATAACACAAGTAGTATTAGAGCAACCACATTAGTGG
____________________________________________________________
consensus GGTGATTTGGATTGTAATGAAATCATAACACAAGTAGTATTAGAGCAACCACATTAGTGG
. : . : . : . : . : . :
rJMFF036L20+ TTTTTGCTCGGTTTTCAAGTTAAAAAGTGTTAAATTAATAGCAGTACGTGTAGCATATAG
rJMFF012P04+ TTTTTGCTCGGTTTTCAAGTTAAAAAGTGTTAAATTAATAGCAGTACGTGTAGCATATAG
rJMSF041C03+ TTTTTGCTCGGTTTTCAAGTTAAAAAGNGTTAAATTAATAGCAGTACGTGTAGCATATAG
____________________________________________________________
consensus TTTTTGCTCGGTTTTCAAGTTAAAAAGTGTTAAATTAATAGCAGTACGTGTAGCATATAG
. : . : . : . : . : . :
rJMFF036L20+ TTGTAGTTTTGTGTGTCTTAGGTTGTAGAATTGTTTGTGTAACATAAACATTCGTACTAG
rJMFF012P04+ TTGTAGTTTTGTGTGTCTTAGGTTGTAGAATTGTTTGTGTAACATAAACATTCGTACTAG
rJMSF041C03+ TTGTAGTTTTGTGTGTCTTAGGTTGTAGAATTGTTTGTNTAACATAAACATTCGTACTAG
____________________________________________________________
consensus TTGTAGTTTTGTGTGTCTTAGGTTGTAGAATTGTTTGTGTAACATAAACATTCGTACTAG
. : . : . : . : . : . :
rJMFF036L20+ CTAGCNGTTCAGAGTCCCCGGTCGGATGAACTGTAAGGTTCACCCTTTCAGG
rJMFF012P04+ CTAGCTGTTCAGAGTCCCCGGTCGGATGAACTGTAAGGTTCACCCTTTCAGGGCCAGTAA
rJMSF041C03+ CTANCTGTTCAGAGTCCCCGGTCGGATGAACTGTAAGGTTCACCCTTTCAGGGCCAGTAA
____________________________________________________________
consensus CTAGCTGTTCAGAGTCCCCGGTCGGATGAACTGTAAGGTTCACCCTTTCAGGGCCAGTAA
. : . : . : . : . : . :
rJMFF012P04+ G
rJMSF041C03+ GTATACTTTGNNGGCCTTGGCCCTTGGGTGTGTGGTTTAAGAATTACGTTATCATAGGAG
____________________________________________________________
consensus GTATACTTTGNNGGCCTTGGCCCTTGGGTGTGTGGTTTAAGAATTACGTTATCATAGGAG