Contig 004354:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF040M23Sequence691004354 (4)ref|XP_009621576.1|147PREDICTED: uncharacterized protein LOC104113174 [Nicotiana tomentosiformis]761004354 (4)ref|XP_009621576.1|147PREDICTED: uncharacterized protein LOC104113174 [Nicotiana tomentosiformis]
JMSF041M23Sequence503004354 (4)ref|XP_009621576.1|119PREDICTED: uncharacterized protein LOC104113174 [Nicotiana tomentosiformis]673004354 (4)ref|XP_009621576.1|147PREDICTED: uncharacterized protein LOC104113174 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF041M23-                             AACTCTTTTAGCCTAGTTTCTTCCCATAGATGAGAAGGGCA
rJMSF040M23-                          AACAACTCTTTTAGCCTAGTTTCTTCCCATAGATGAGAAGGGCA
                      ____________________________________________________________
consensus                             AACAACTCTTTTAGCCTAGTTTCTTCCCATAGATGAGAAGGGCA
 
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JMSF040M23+                                     GAAGAAGAAGAAGTGTCGGAAACTCGGGGCGAAG
rJMSF041M23-          TTGTAGTAATTAACTATCCTCAAGAAGAAGAAGAAGAAGTGTCGGAAACTCGGGGCGAAG
rJMSF040M23-          TTGTAGTAATTAACTATCCTCAAGAAGAAGAAGAAGAAGTGTCGGAAACTCGGGGCGAAG
                      ____________________________________________________________
consensus             TTGTAGTAATTAACTATCCTCAAGAAGAAGAAGAAGAAGTGTCGGAAACTCGGGGCGAAG
 
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JMSF040M23+           TGACCGGAAAAAGAGGGAGGAGCTGCGGCGGCGGCTGAGAGTCTCTAGGAGTATCGGTCC
rJMSF041M23-          TGACCGGAAAAAGAGGGAGGAGCTGCGGCGGCGGCTGAGAGTCTCTAGGAGTATCGGTCC
rJMSF040M23-          TGACCGGAAAAAGAGGGAGGAGCTGCGGCGGCGGCTGAGAGTCTCTAGGAGTATCGGTCC
                      ____________________________________________________________
consensus             TGACCGGAAAAAGAGGGAGGAGCTGCGGCGGCGGCTGAGAGTCTCTAGGAGTATCGGTCC
 
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JMSF040M23+           TCGGAGATGGATGAAAGTAAAACTTCTTCTCAGCAATCGCTTTCTCCTCCTCAGACGAAG
rJMSF041M23-          TCGGAGATGGATGAAAGTAAAACTTCTTCTCAGCAATCGCTTTCTCCTCCTCAGACGAAG
rJMSF040M23-          TCGGAGATGGATGAAAGTAAAACTTCTTCTCAGCAATCGCTTTCTCCTCCTCAGACGAAG
                      ____________________________________________________________
consensus             TCGGAGATGGATGAAAGTAAAACTTCTTCTCAGCAATCGCTTTCTCCTCCTCAGACGAAG
 
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JMSF040M23+           ACGACTTGTCGAACGGGTCTGCGGTCAACGGCGTGACGGGGCTGAGAACGAGCGCCGGAA
rJMSF041M23-          ACGACTTGTCGAACGGGTCTGCGGTCAACGGCGTGACGGGGCTGAGAACGAGCGCCGGAA
JMSF041M23+                                             GACGGGGCTGAGAACGAGCGCCGGAA
rJMSF040M23-          ACGACTTGTCGAACGGGTCTGCGGTCAACGGCGTGACGGGGCTGAGAACGAGCGCCGGAA
                      ____________________________________________________________
consensus             ACGACTTGTCGAACGGGTCTGCGGTCAACGGCGTGACGGGGCTGAGAACGAGCGCCGGAA
 
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JMSF040M23+           AATCAAGAATGCTCGGAGACAGAACCTCCGGCTTCAAGAACGACCCGGAATTCAAAGGGC
rJMSF041M23-          AATCAAGAATGCTCGGAGACAGAACCTCCGGCTTCAAGAACGACCCGGAATTCAAAGGGC
JMSF041M23+           AATCAAGAATNCTCGGAGACAGAACCTCCGGCTTCAAGAACGACCCGGAATTCAAAGGGC
rJMSF040M23-          AATCAAGAATGCTCGGAGACAGAACCTCCGGCTTCAAGAACGACCCGGAATTCAAAGGGC
                      ____________________________________________________________
consensus             AATCAAGAATGCTCGGAGACAGAACCTCCGGCTTCAAGAACGACCCGGAATTCAAAGGGC
 
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JMSF040M23+           TTATAATTAGGCCATTCTTGAGGCTGTTCCTTCTCTCGTAGAGCTTGAACCCCTGTTTCT
rJMSF041M23-          TTATAATTAGGCCATTCTTGAGGCTGTTCCTTCTCTCGTAGAGCTTGAACCCCTGTTTCT
JMSF041M23+           TTATAATTAGGCCATTCTTGAGGCTGTTCCTTCTCTCGTAGAGCTTGAACCCCTGTTTCT
rJMSF040M23-          TTATAATTAGGCCATTCTTGAGGCTGTTCCTTCTCTCGTAGAGCTTGAACCCCTGTTTCT
                      ____________________________________________________________
consensus             TTATAATTAGGCCATTCTTGAGGCTGTTCCTTCTCTCGTAGAGCTTGAACCCCTGTTTCT
 
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JMSF040M23+           TGGGAGGGGTCTTGTTCGGGGGTATGGGGAATCCCTTGGCGGCGGCGGCGGAGGAGGAGG
rJMSF041M23-          TGGGAGGGGTCTTGTTCGGGGGTATGGGGAATCCCTTGGCGGCGGCGGCGGAGGAGGAGG
JMSF041M23+           TGGGAGGGGTCTTGTTCGGGGGTATGGGGAATCCCTTGNCGGCGGCGGCGGAGGAGGAGG
rJMSF040M23-          TGGGAGGGGTCTTGTTCGGGGGTATGGGGAATCCCTTGGCGGCGGCGGCGGAGGAGGAGG
                      ____________________________________________________________
consensus             TGGGAGGGGTCTTGTTCGGGGGTATGGGGAATCCCTTGGCGGCGGCGGCGGAGGAGGAGG
 
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JMSF040M23+           ATGGGTTTTTAGCGGCGTCCGAGGAACCAGTGAGCATCTGGACAACCTGCTTGAACGATG
rJMSF041M23-          ATGGGTTTTTAGCGGCGTCCGAGGAACCAGTGAGCATCTGGACAACCTGCTTGAACGATG
JMSF041M23+           ATGGGTTTTTAGCGGCGTCCGAGGAACCAGTGAGCATCTGGACAACCTGCTTGANCGATG
rJMSF040M23-          ATGGGTTTTTAGCGGCGTCCGAGGAACCAGTGAGCATCTGGACAACCTGCTTGAACGATG
                      ____________________________________________________________
consensus             ATGGGTTTTTAGCGGCGTCCGAGGAACCAGTGAGCATCTGGACAACCTGCTTGAACGATG
 
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JMSF040M23+           AAGTGTCTGCTTGAACAAAGGTTGTTGGGTAAGGGTTATTAGCTACTTCAGATCTT-GGG
rJMSF041M23-          AAGTGTCTGCTTGAACAAAGGTTGTTGGGTAAGGGTTATTAGCTACTTCAGATCTTGGGG
JMSF041M23+           AAGTGTNTGCTTGAACAAAGGTTGTCGGGTAAGGGTTATTAGCTACTTCAGATCTT-GGG
rJMSF040M23-          AAGTGTCTGCTTGAACAAAGGTTGTTGGGTAAGGGTTATTAGCTACTTCAGATCTT-GGG
                      ____________________________________________________________
consensus             AAGTGTCTGCTTGAACAAAGGTTGTTGGGTAAGGGTTATTAGCTACTTCAGATCTT-GGG
 
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JMSF040M23+           GTTAGTGGTGGGGAAGTACCACTGCCATTGTTGCTGTTT-GGTGAG-TTTATGGTAGAAT
rJMSF041M23-          GTTAGTGGTGGGGAAGTACCACTGCCATTGTTGCTGTTTNGGTGAGTTTTATGGTAGAAT
JMSF041M23+           GTTAGTGGTGGGGAAGTACCACNGCCANTGTTGCTGTTT-GGTGAG-TTTATGGTAGAAT
rJMSF040M23-          GTTAGTGGTGGGGAAGTACCACTGCCATTGTTGCTGTTT-GGTGAG-TTTATGGTAGAAT
                      ____________________________________________________________
consensus             GTTAGTGGTGGGGAAGTACCACTGCCATTGTTGCTGTTT-GGTGAG-TTTATGGTAGAAT
 
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JMSF040M23+           CTTGAAGAGGTTTTGAGATGATTCCCATTGAAATTTTAGTTTCTTTCTTCATCTTTTTCC
rJMSF041M23-          CTTGAANAGGTTTTGAGATGATTCCCATTGAA                            
JMSF041M23+           CTTGAAGAGGTTTTGAGATGATTCCCATTGAAATTNTAGTTTCTTTCTTCATCTTTTTCC
rJMSF040M23-          CTTGAAGAGGTTTTGAGATGATTCCCATTGAAATTTTAGTTTCTTTCTTCATCTTTTTCC
                      ____________________________________________________________
consensus             CTTGAAGAGGTTTTGAGATGATTCCCATTGAAATTTTAGTTTCTTTCTTCATCTTTTTCC
 
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JMSF040M23+           TCTCTCTCTCTCTCTATGTATCCAAAATTTTGATTTGGAGAGAAAAGAATGGGAAGGATC
JMSF041M23+           TCTCTCTCTCTCTCTATGTATCCAAAATTTTGATTTGGAGAGAAAAGAATGGGAAGGATC
rJMSF040M23-          TCTCTCTCTCTCTCTATGTATCCAAAATTTTGATTTGGAGAGAAAAGAATGGGAAGGATC
                      ____________________________________________________________
consensus             TCTCTCTCTCTCTCTATGTATCCAAAATTTTGATTTGGAGAGAAAAGAATGGGAAGGATC