Contig 004353:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF040J19Sequence627004353 (2)gb|KJB17803.1|6e-61hypothetical protein B456_003G015900 [Gossypium raimondii] gb|KJB17804.1| hypoth567004353 (2)ref|XP_007156925.1|1e-26hypothetical protein PHAVU_002G028800g [Phaseolus vulgaris] gb|ESW28919.1| hypot

Alignment

This contig is upended


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JMSF040J19-                      GGATTCTCTCTCTCTCTAGATCGCCTTTTTCATCCACATCTGAGAGTGA
                      ____________________________________________________________
consensus                        GGATTCTCTCTCTCTCTAGATCGCCTTTTTCATCCACATCTGAGAGTGA
 
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JMSF040J19-           AGAACACACGGGAATATATCATTCATTCACATCCAGCTCGATCCCGACAACAATGGATAG
                      ____________________________________________________________
consensus             AGAACACACGGGAATATATCATTCATTCACATCCAGCTCGATCCCGACAACAATGGATAG
 
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JMSF040J19-           AAGAATCAAATAATCCTGTTAAAACAACATAATTCGATTTTCGCTCTTCGTCTTGTTCTT
                      ____________________________________________________________
consensus             AAGAATCAAATAATCCTGTTAAAACAACATAATTCGATTTTCGCTCTTCGTCTTGTTCTT
 
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JMSF040J19-           GAATTTATTGGGGTTCTGGAACAATCGGGGAAATGAAGGATGATGACGCGTTGCCGATAT
                      ____________________________________________________________
consensus             GAATTTATTGGGGTTCTGGAACAATCGGGGAAATGAAGGATGATGACGCGTTGCCGATAT
 
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JMSF040J19-           CAACTCCGACGTCGTATTCGGCATCATCCGCCACTACCGCCGGCCATTCGAGGAAGGAGA
                      ____________________________________________________________
consensus             CAACTCCGACGTCGTATTCGGCATCATCCGCCACTACCGCCGGCCATTCGAGGAAGGAGA
 
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JMSF040J19-           GTTCCCATTCGGTTCTCTTCGGCCGAGGCCGGTACAAGTTCTGGGCGTTGGCAGCTATTC
                      ____________________________________________________________
consensus             GTTCCCATTCGGTTCTCTTCGGCCGAGGCCGGTACAAGTTCTGGGCGTTGGCAGCTATTC
 
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JMSF040J19-           TACTGCTTGCCTTCTGGTCAATGTTCACCGGCACTGTCACTCTCCGGTGGTCCGCCGGAA
                      ____________________________________________________________
consensus             TACTGCTTGCCTTCTGGTCAATGTTCACCGGCACTGTCACTCTCCGGTGGTCCGCCGGAA
 
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JMSF040J19-           ATCTCAACCGTTTCTCCGACGACTTCGATATTCCGCTGCACGAAGATCTCGACGTCCTCG
rJMSF040J19+                                           CGCTGCNCGAAGATCTCGACGTCCTCG
                      ____________________________________________________________
consensus             ATCTCAACCGTTTCTCCGACGACTTCGATATTCCGCTGCACGAAGATCTCGACGTCCTCG
 
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JMSF040J19-           AAATGGAGGAGAGAGAGAAGATGGTGAAGCATATGTGGGATGTGTACACTAACAGCCGTC
rJMSF040J19+          AAATGGAGGAGAGAGAGAAGATGGTGAAGCATATGTGGGATGTGTACNCTAACAGCCGTC
                      ____________________________________________________________
consensus             AAATGGAGGAGAGAGAGAAGATGGTGAAGCATATGTGGGATGTGTACACTAACAGCCGTC
 
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JMSF040J19-           GGATCAGATTGCCTAAGTTCTGGCAGCAGGCCTTCGAGGCGGCCTACGAGGACTTAACCA
rJMSF040J19+          GGATCAGATTGCCTAAGTTNTGGCAGCAGGCCTTCGAGGCGGCCTACGAGGACTTAACCN
                      ____________________________________________________________
consensus             GGATCAGATTGCCTAAGTTCTGGCAGCAGGCCTTCGAGGCGGCCTACGAGGACTTAACCA
 
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JMSF040J19-           GTGATGAGCCTGAAGTGCGAGAGGCTGCCATTTCCGAG                      
rJMSF040J19+          GTGATGAGCCTGAAGTGCGAGAGGCTGCCNTTTCCGAGATCGCTAAAANGTCTATTCGCT
                      ____________________________________________________________
consensus             GTGATGAGCCTGAAGTGCGAGAGGCTGCCATTTCCGAGATCGCTAAAANGTCTATTCGCT
 
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rJMSF040J19+          CCATCCNTTTTGAGAGCCCNCCCGTTCNCNCGTTGGCGATTCGGGAGTTGTNTAAAGCAA
                      ____________________________________________________________
consensus             CCATCCNTTTTGAGAGCCCNCCCGTTCNCNCGTTGGCGATTCGGGAGTTGTNTAAAGCAA
 
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rJMSF040J19+          ACNGAGTTCAAGAAAATGATNTGAGCAAGGAGTAAATTATGACTCGAAGAATGCTTATGG
                      ____________________________________________________________
consensus             ACNGAGTTCAAGAAAATGATNTGAGCAAGGAGTAAATTATGACTCGAAGAATGCTTATGG
 
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rJMSF040J19+          ATCCTAAGAAGTNTGCTAGGTTGCCGATGTTTCNCNCGGGATNTACTGTCGTTNTGGGGG
                      ____________________________________________________________
consensus             ATCCTAAGAAGTNTGCTAGGTTGCCGATGTTTCNCNCGGGATNTACTGTCGTTNTGGGGG
 
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rJMSF040J19+          GAAACTATACTCCTGTTCCTCACTTTTGCAAGAGGGGCAAAAACAATGTATTTATTTAGG
                      ____________________________________________________________
consensus             GAAACTATACTCCTGTTCCTCACTTTTGCAAGAGGGGCAAAAACAATGTATTTATTTAGG
 
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rJMSF040J19+          TTTTCNTTCCTAATTATTATTATAATTTTTTTTTTTTCAGTTTCTTTTATTTTCCCGCTG
                      ____________________________________________________________
consensus             TTTTCNTTCCTAATTATTATTATAATTTTTTTTTTTTCAGTTTCTTTTATTTTCCCGCTG
 
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rJMSF040J19+          GGTGAAGAGTGAAACAACATTTTGATTAAATTAATTCATACATAGAAAATTTTGTGTTAC
                      ____________________________________________________________
consensus             GGTGAAGAGTGAAACAACATTTTGATTAAATTAATTCATACATAGAAAATTTTGTGTTAC