Contig 004350:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF040F13Sequence691004350 (2)emb|CDP04295.1|2e-92unnamed protein product [Coffea canephora]867004350 (2)emb|CDP04295.1|7e-107unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMSF040F13-                                        GAATGTTGATGAAATCCGCACCGTTCAATTT
                      ____________________________________________________________
consensus                                          GAATGTTGATGAAATCCGCACCGTTCAATTT
 
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JMSF040F13-           GCTCCTATTCATTAAGCCATATGGAGTGGCTATTCGTCCTCCAGCTGTTGTTGTCCTCCG
rJMSF040F13+                                           TCGTCCTCCAGCTGTTGTTGTCCTCCG
                      ____________________________________________________________
consensus             GCTCCTATTCATTAAGCCATATGGAGTGGCTATTCGTCCTCCAGCTGTTGTTGTCCTCCG
 
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JMSF040F13-           CGGCATATCGCTGATCGGACTTCCACCGCTAAGTGGTGGCAGAAATTCCATTCCGGTCCC
rJMSF040F13+          CGGCATATCGCTGATCGGACTTCCACCGCTAAGTGGTGGCAGAAATTCCATTCCGGTCCC
                      ____________________________________________________________
consensus             CGGCATATCGCTGATCGGACTTCCACCGCTAAGTGGTGGCAGAAATTCCATTCCGGTCCC
 
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JMSF040F13-           TCCTCGCGCTAACCGTTCTCAGCCACTCTCAGTCGTGAAAATGGAGAGCGCCTGCGAAAC
rJMSF040F13+          TCCTCGCGCTAACCGTTCTCAGCCACTCTCAGTCGTGAAAATGGAGAGCGCCTGCGAAAC
                      ____________________________________________________________
consensus             TCCTCGCGCTAACCGTTCTCAGCCACTCTCAGTCGTGAAAATGGAGAGCGCCTGCGAAAC
 
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JMSF040F13-           AAAACCTTCTCCGGCCGTGGTGAAGCTGAAGCCCATCGAAGCTACTCCGGAGACCTTCCG
rJMSF040F13+          AAAACCTTCTCCGGCCGTGGTGAAGCTGAAGCCCATCGAAGCTACTCCGGAGACCTTCCG
                      ____________________________________________________________
consensus             AAAACCTTCTCCGGCCGTGGTGAAGCTGAAGCCCATCGAAGCTACTCCGGAGACCTTCCG
 
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JMSF040F13-           AGAGTTTGGACAAGTGATTGAGGCGTCGCCCGACGGCGAAGAGTTCGGCCCCCGCGATGC
rJMSF040F13+          AGAGTTTGGACAAGTGATTGAGGCGTCGCCCGACGGCGAAGAGTTCGGCCCCCGCGATGC
                      ____________________________________________________________
consensus             AGAGTTTGGACAAGTGATTGAGGCGTCGCCCGACGGCGAAGAGTTCGGCCCCCGCGATGC
 
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JMSF040F13-           TCAACTCGACCTCAGCCGTGGCGTTCCTAGGTTTTACATTATGCAACTCAAAGGTCGGTC
rJMSF040F13+          TCAACTCGACCTCAGCCGTGGCGTTCCTAGGTTTTACATTATGCAACTCAAAGGTCGGTC
                      ____________________________________________________________
consensus             TCAACTCGACCTCAGCCGTGGCGTTCCTAGGTTTTACATTATGCAACTCAAAGGTCGGTC
 
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JMSF040F13-           ATTGAAGTTTTCAAGCATTACACACCATGCCAATGTGACACAGTGCCTTGGATCAATTGG
rJMSF040F13+          ATTGAAGTTTTCAAGCATTACACACCATGCCAATGTGACACAGTGCCTTGGATCAATTGG
                      ____________________________________________________________
consensus             ATTGAAGTTTTCAAGCATTACACACCATGCCAATGTGACACAGTGCCTTGGATCAATTGG
 
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JMSF040F13-           GGGCAATGTTTGGTATCTTGGAGTTGCTAAGTCATCTATTGTAGATCCAAGTGAAATTAA
rJMSF040F13+          GGGCAATGTTTGGTATCTTGGAGTTGCTAAGTCATCTATTGTAGATCCAAGTGAAATTAA
                      ____________________________________________________________
consensus             GGGCAATGTTTGGTATCTTGGAGTTGCTAAGTCATCTATTGTAGATCCAAGTGAAATTAA
 
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JMSF040F13-           GGGAGAAACGGGTGTTAATATCCAGCAATCAGATAGTGGGCATTTCTATGTGCCTCCTGC
rJMSF040F13+          GGGAGAAACGGGTGTTAATATCCAGCAATCAGATAGTGGGCATTTCTATGTGCCTCCTGC
                      ____________________________________________________________
consensus             GGGAGAAACGGGTGTTAATATCCAGCAATCAGATAGTGGGCATTTCTATGTGCCTCCTGC
 
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JMSF040F13-           TGTTGACGAAGTACATGCATTTAAAATTTCAGGCTCGAAGTTTATAAAGCTAAACCGAGG
rJMSF040F13+          TGTTGACGAAGTACATGCATTTAAAATTTCAGGCTCGAAGTTTATAAAGCTAAACCGAGG
                      ____________________________________________________________
consensus             TGTTGACGAAGTACATGCATTTAAAATTTCAGGCTCGAAGTTTATAAAGCTAAACCGAGG
 
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JMSF040F13-           TACATGGCATGCTGGACCATTGTTTAACGGGGGTGTGATGGACTTCTACAATCTGGAACT
rJMSF040F13+          TACATGGCATGCTGGACCATTGTTTAACGGGGGTGTGATGGACTTCTACAATCTGGAACT
                      ____________________________________________________________
consensus             TACATGGCATGCTGGACCATTGTTTAACGGGGGTGTGATGGACTTCTACAATCTGGAACT
 
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rJMSF040F13+          CAATAATACAAATGTGGTTGATCACACAACACACTACTTCAGCAAGAAGAATAATGTGGT
                      ____________________________________________________________
consensus             CAATAATACAAATGTGGTTGATCACACAACACACTACTTCAGCAAGAAGAATAATGTGGT
 
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rJMSF040F13+          GTTCCATTTGGAGGAGTAATTGATCTTCTCCAGCAAAGAGTTTTCTGAGGGGAACAATAG
                      ____________________________________________________________
consensus             GTTCCATTTGGAGGAGTAATTGATCTTCTCCAGCAAAGAGTTTTCTGAGGGGAACAATAG
 
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rJMSF040F13+          GAACGAATTGTGATGATTTCTGCATTTCTTTCTTTCCCTTGCAGAAGATATAACTATATC
                      ____________________________________________________________
consensus             GAACGAATTGTGATGATTTCTGCATTTCTTTCTTTCCCTTGCAGAAGATATAACTATATC
 
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rJMSF040F13+          TGTATTTTGTACTAAAAAGTAACCTTGCAGGTCCAGGTTTNCCCTGTACTTGAAAGTATT
                      ____________________________________________________________
consensus             TGTATTTTGTACTAAAAAGTAACCTTGCAGGTCCAGGTTTNCCCTGTACTTGAAAGTATT