Contig 004349:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF015B01Sequence510006654 (2)ref|XP_009791699.1|6e-25PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Nicotiana sylvestris]630004349 (2)gb|AIU50073.1|3e-4415-cis-zeta-carotene isomerase, partial [Prunus persica]
JMSF040D15Sequence668006654 (2)ref|XP_009791699.1|1e-35PREDICTED: 15-cis-zeta-carotene isomerase, chloroplastic [Nicotiana sylvestris]405004349 (2)gb|AIU50073.1|5e-0815-cis-zeta-carotene isomerase, partial [Prunus persica]

Alignment

This contig is upended


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rJMSF015B01+                              CCAAAGATGCATNTTTGGGAAACTGGGATCATGNGAATTN
                      ____________________________________________________________
consensus                                 CCAAAGATGCATNTTTGGGAAACTGGGATCATGNGAATTN
 
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rJMSF015B01+          CTNGGCACCCCCNGATGGTNGGGCNGGTGANGTGGTGCCNTGCTCACCCTNTATGGNTTG
                      ____________________________________________________________
consensus             CTNGGCACCCCCNGATGGTNGGGCNGGTGANGTGGTGCCNTGCTCACCCTNTATGGNTTG
 
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rJMSF015B01+          GGAACTNGGNTGCTGTGGNGGCNTCCNTGGGTTTGATAGGNCCCCNTTTGTTTGGAGCCN
                      ____________________________________________________________
consensus             GGAACTNGGNTGCTGTGGNGGCNTCCNTGGGTTTGATAGGNCCCCNTTTGTTTGGAGCCN
 
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rJMSF015B01+          GGAANGGGGNCCGGNGGNTGGGAATNCGATATGGGGNGGCTTTTGAAGCTGTGAAGAATA
                      ____________________________________________________________
consensus             GGAANGGGGNCCGGNGGNTGGGAATNCGATATGGGGNGGCTTTTGAAGCTGTGAAGAATA
 
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rJMSF015B01+          GAACNAGCNTCNTTCCNTTTGCNGCAATTGTAGATGGTNNCCCGAAGTTGCCNAAAGNTT
rJMSF040D15+                                    ATTGTAGATGGTNNCCNGAAGTTGCCNAAAGNTT
                      ____________________________________________________________
consensus             GAACNAGCNTCNTTCCNTTTGCNGCAATTGTAGATGGTNNCCCGAAGTTGCCNAAAGNTT
 
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rJMSF015B01+          NTTNCAAAGAATTTGTTAGNTTGCCNTACTTGTCCNTAACNGTATTGNCCTTAGGNGCCT
rJMSF040D15+          NTTNCAAAGAATTTGTTAGNTTGCCNTACTTGTCCNTAACNGTNTTGNCCTTNGGNGCCT
                      ____________________________________________________________
consensus             NTTNCAAAGAATTTGTTAGNTTGCCNTACTTGTCCNTAACNGTATTGNCCTTAGGNGCCT
 
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rJMSF015B01+          ACTTTGCCCNCCCNCTCNTGCNGGNTGCNGGNTTCNGGNTTCNCTGGTAGTTCAACNTNT
rJMSF040D15+          NCTTTGCCCNCCCCCTCNTGCNGGNTGCNGGGTTCNGGNTTCNCTGGTAGTTCAACNTNT
                      ____________________________________________________________
consensus             ACTTTGCCCNCCCCCTCNTGCNGGNTGCNGGGTTCNGGNTTCNCTGGTAGTTCAACNTNT
 
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rJMSF015B01+          CNCTTTTGNTCCNTGTAAAAATAAAAATAANGTAATNTTTTTCNCCCNTGGGGNGTAGAT
rJMSF040D15+          CNCTTTTGNTCCNNGTAAAAATAAAAATAANGTAATNTTTTTCNCCCNTGGGGNGTAGAT
                      ____________________________________________________________
consensus             CNCTTTTGNTCCNTGTAAAAATAAAAATAANGTAATNTTTTTCNCCCNTGGGGNGTAGAT
 
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rJMSF015B01+          GAGGCGGTGCGGGTGCGGGGTGCCGGTNTNTTCAAGTTTAACCNAAGGNATATAGGGTTT
rJMSF040D15+          GAGGCGGNGCGGGTGCGGGGTGCCGGTNTTTTCAAGNTTAACCNAAGGNATATAGGGNTT
                      ____________________________________________________________
consensus             GAGGCGGTGCGGGTGCGGGGTGCCGGTNTTTTCAAGTTTAACCNAAGGNATATAGGGTTT
 
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rJMSF015B01+          AGCNTATCCNGNCTAAGGAAACTTGTGGTCCGNCAAAAAAAAAAAGTGAAATACTTCCCA
rJMSF040D15+          AGCNTATCCNGNCTAAGGNAACTTGNGGTCCGNCAAAAAAAAAAAGTGAAATACTTCCCA
                      ____________________________________________________________
consensus             AGCNTATCCNGNCTAAGGAAACTTGTGGTCCGNCAAAAAAAAAAAGTGAAATACTTCCCA
 
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rJMSF015B01+          TTGCATTTATGCCCGGCTTTAAGAAGCTGGTCTAACCATATTTCATACAG          
rJMSF040D15+          TTGCATTTATGCCCGGCTTTAAGAAGCTGGTCTAACCATATTTCATACAGTATAAATAAT
                      ____________________________________________________________
consensus             TTGCATTTATGCCCGGCTTTAAGAAGCTGGTCTAACCATATTTCATACAGTATAAATAAT