Contig 004343:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011N01Sequence426000459 (13)ref|XP_009794563.1|2e-26PREDICTED: TMV resistance protein N-like [Nicotiana sylvestris]769004343 (3)ref|XP_009628590.1|2e-09PREDICTED: TMV resistance protein N-like isoform X2 [Nicotiana tomentosiformis]
JMSF024L20Sequence666000459 (13)ref|XP_006371051.1|4e-42hypothetical protein POPTR_0019s02990g, partial [Populus trichocarpa] gb|ERP4884134004343 (3)
JMSF039K06Sequence662017907ref|XP_008367271.1|3e-13PREDICTED: TMV resistance protein N-like [Malus domestica]813004343 (3)ref|XP_009628591.1|2e-13PREDICTED: TMV resistance protein N-like isoform X3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF039K06+ GCACCATATAATAGATGTTTGGACTTGGAAAAC
                      ____________________________________________________________
consensus GCACCATATAATAGATGTTTGGACTTGGAAAAC
 
. : . : . : . : . : . :
rJMSF011N01+ AATTGGCANCCNAGTATTCAGAANTATATTCTGTCTCANTCTCTTTTTCT
rJMSF039K06+ TACATAGCTGAATTGGCAACCAAGTATTCAGAATTATATTCTGTCTCATTCTCTTTTTCT
                      ____________________________________________________________
consensus TACATAGCTGAATTGGCAACCAAGTATTCAGAATTATATTCTGTCTCATTCTCTTTTTCT
 
. : . : . : . : . : . :
rJMSF011N01+ ANGCATGTCAATGATGACATAGCCTTTCTAAAACCTGAGGAGTTGGCTAAGAAGTTTATT
rJMSF039K06+ ATGCATGTTAATGATGACATAGCCTTTCTAAAACCTGAGGAGTTGGCTAAGAAGTTTATT
                      ____________________________________________________________
consensus ATGCATGTTAATGATGACATAGCCTTTCTAAAACCTGAGGAGTTGGCTAAGAAGTTTATT
 
. : . : . : . : . : . :
rJMSF011N01+ CCTATCACACTGCCTTTTCTAAACAGAAATACTCCTTTTGCTGTCACCTATCCTTTTCAC
rJMSF039K06+ CCTATCACACTGCCTTTTCTAAACAGAAATACTCCTTTTGCTGTCACCTATCCTTTTCAC
                      ____________________________________________________________
consensus CCTATCACACTGCCTTTTCTAAACAGAAATACTCCTTTTGCTGTCACCTATCCTTTTCAC
 
. : . : . : . : . : . :
rJMSF011N01+ ACTTGGAGTGATGATTATAATATGGGCAGATGTTTCAAATATCCTCACAACGATTCAAAC
rJMSF039K06+ ACTTGGAGTGATGATTATAATATGGGCAGATGTTTCAAATATCCTCACAATTATTCAAAC
                      ____________________________________________________________
consensus ACTTGGAGTGATGATTATAATATGGGCAGATGTTTCAAATATCCTCACAATTATTCAAAC
 
. : . : . : . : . : . :
rJMSF011N01+ AAGATCTCCATTTCTCTGGATCCCACTTGGTACAATCATAACTTTGTAGGGTTCGTTGTA
rJMSF039K06+ AAGATCTCCATTTCTCTGGATCCCACTTGGTACAATCATAACTTTGTAGGGTTCGTTGTA
                      ____________________________________________________________
consensus AAGATCTCCATTTCTCTGGATCCCACTTGGTACAATCATAACTTTGTAGGGTTCGTTGTA
 
. : . : . : . : . : . :
rJMSF011N01+ TGTTTTCGCTTTCCAATAAAAGTGAGTTGGGAGTCACACCCAGATATTCGACCTTTTAGG
rJMSF039K06+ TGTTTTCGCTTTCCAATAAAAGTGAGTTGGGAGTCACACCCAGATATTCGACCTTTTAGG
                      ____________________________________________________________
consensus TGTTTTCGCTTTCCAATAAAAGTGAGTTGGGAGTCACACCCAGATATTCGACCTTTTAGG
 
. : . : . : . : . : . :
rJMSF024L20+ CACACAAAGATAATGGAAGTGAACATCCTCTCCAA
rJMSF011N01+ CATTGTAAACTCATAACCAAACTTACACACAAAGATAATGGAAGTGAACATCCTCTCCAA
rJMSF039K06+ CATTGTAAACTCATAACCAAACTTACACACAAAGATAATGGAAGTGAACATCCTCTCCAA
                      ____________________________________________________________
consensus CATTGTAAACTCATAACCAAACTTACACACAAAGATAATGGAAGTGAACATCCTCTCCAA
 
. : . : . : . : . : . :
rJMSF024L20+ NCCGAATGTTTGATTGGCAGACTATATGATGAGGAATTTGATGATGGCTTTGACGATNCG
rJMSF011N01+ ACCGAATGTTTGATTGGCAGACTATATGATGAGGAATTTGATGATGGCTTTGACGATACG
rJMSF039K06+ ACCGAATGTTTGATTGGCAGACTATATGATGAGGAATTTGATGATGGCTTTGACGATACG
                      ____________________________________________________________
consensus ACCGAATGTTTGATTGGCAGACTATATGATGAGGAATTTGATGATGGCTTTGACGATACG
 
. : . : . : . : . : . :
rJMSF024L20+ GAACTTGTANGCTTTGCGT
rJMSF011N01+ GAACTTGTATGCTTTGCGTACATACCGTTTAGTAGTCTGTGGCCTAAATCTAAGGCTATC
rJMSF039K06+ GAACTTGTATGCTTTGCGTACATACCGTTTAGTAGTCTGTGGCCTAAATCTAAGGCTATC
                      ____________________________________________________________
consensus GAACTTGTATGCTTTGCGTACATACCGTTTAGTAGTCTGTGGCCTAAATCTAAGGCTATC
 
. : . : . : . : . : . :
rJMSF011N01+ ACGGATACTACTACTCCCAATCATTATTTGGTATTCGAGGCAGCATTTCAAGAGTTGGAA
rJMSF039K06+ ACGGATACTACTACTCCCAATCATTATTTGGTATTCGAGGCAGCATTTCAAGAGTTGGAA
                      ____________________________________________________________
consensus ACGGATACTACTACTCCCAATCATTATTTGGTATTCGAGGCAGCATTTCAAGAGTTGGAA
 
. : . : . : . : . : . :
rJMSF011N01+ TTTTCAAACCATTTCAATGCCGAAGATTGGGAAATTTCAACAGATTGGAGTTGTAGTTTG
rJMSF039K06+ TTTTCAAACCATTTCAATGCCGAAGATTGGGAAATTTCAACAGATTGGAGTTGTAGTTTG
                      ____________________________________________________________
consensus TTTTCAAACCATTTCAATGCCGAAGATTGGGAAATTTCAACAGATTGGAGTTGTAGTTTG
 
. : . : . : . : . : . :
rJMSF011N01+ CTGTATAAAGATGATAAATCATTAATTGAAGAATTACAGCGAAAAAGGGAGAATGGTTCT
rJMSF039K06+ CTGTATAAAGATGATAAATCATTAATTGAAGAATTACAGCGAAAAAGGGAGAATGGTTCT
                      ____________________________________________________________
consensus CTGTATAAAGATGATAAATCATTAATTGAAGAATTACAGCGAAAAAGGGAGAATGGTTCT
 
. : . : . : . : . : . :
rJMSF011N01+ AGCGAGAGTGATTCAGATGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA
rJMSF039K06+ AGCGAGAGTGATTCAGATGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAT
                      ____________________________________________________________
consensus AGCGAGAGTGATTCAGATGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAT