Contig 004343:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF011N01Sequence426000459 (13)ref|XP_009794563.1|2e-26PREDICTED: TMV resistance protein N-like [Nicotiana sylvestris]769004343 (3)ref|XP_009628590.1|2e-09PREDICTED: TMV resistance protein N-like isoform X2 [Nicotiana tomentosiformis]
JMSF024L20Sequence666000459 (13)ref|XP_006371051.1|4e-42hypothetical protein POPTR_0019s02990g, partial [Populus trichocarpa] gb|ERP4884134004343 (3)
JMSF039K06Sequence662017907ref|XP_008367271.1|3e-13PREDICTED: TMV resistance protein N-like [Malus domestica]813004343 (3)ref|XP_009628591.1|2e-13PREDICTED: TMV resistance protein N-like isoform X3 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMSF039K06+                                     GCACCATATAATAGATGTTTGGACTTGGAAAAC
                      ____________________________________________________________
consensus                                        GCACCATATAATAGATGTTTGGACTTGGAAAAC
 
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rJMSF011N01+                    AATTGGCANCCNAGTATTCAGAANTATATTCTGTCTCANTCTCTTTTTCT
rJMSF039K06+          TACATAGCTGAATTGGCAACCAAGTATTCAGAATTATATTCTGTCTCATTCTCTTTTTCT
                      ____________________________________________________________
consensus             TACATAGCTGAATTGGCAACCAAGTATTCAGAATTATATTCTGTCTCATTCTCTTTTTCT
 
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rJMSF011N01+          ANGCATGTCAATGATGACATAGCCTTTCTAAAACCTGAGGAGTTGGCTAAGAAGTTTATT
rJMSF039K06+          ATGCATGTTAATGATGACATAGCCTTTCTAAAACCTGAGGAGTTGGCTAAGAAGTTTATT
                      ____________________________________________________________
consensus             ATGCATGTTAATGATGACATAGCCTTTCTAAAACCTGAGGAGTTGGCTAAGAAGTTTATT
 
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rJMSF011N01+          CCTATCACACTGCCTTTTCTAAACAGAAATACTCCTTTTGCTGTCACCTATCCTTTTCAC
rJMSF039K06+          CCTATCACACTGCCTTTTCTAAACAGAAATACTCCTTTTGCTGTCACCTATCCTTTTCAC
                      ____________________________________________________________
consensus             CCTATCACACTGCCTTTTCTAAACAGAAATACTCCTTTTGCTGTCACCTATCCTTTTCAC
 
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rJMSF011N01+          ACTTGGAGTGATGATTATAATATGGGCAGATGTTTCAAATATCCTCACAACGATTCAAAC
rJMSF039K06+          ACTTGGAGTGATGATTATAATATGGGCAGATGTTTCAAATATCCTCACAATTATTCAAAC
                      ____________________________________________________________
consensus             ACTTGGAGTGATGATTATAATATGGGCAGATGTTTCAAATATCCTCACAATTATTCAAAC
 
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rJMSF011N01+          AAGATCTCCATTTCTCTGGATCCCACTTGGTACAATCATAACTTTGTAGGGTTCGTTGTA
rJMSF039K06+          AAGATCTCCATTTCTCTGGATCCCACTTGGTACAATCATAACTTTGTAGGGTTCGTTGTA
                      ____________________________________________________________
consensus             AAGATCTCCATTTCTCTGGATCCCACTTGGTACAATCATAACTTTGTAGGGTTCGTTGTA
 
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rJMSF011N01+          TGTTTTCGCTTTCCAATAAAAGTGAGTTGGGAGTCACACCCAGATATTCGACCTTTTAGG
rJMSF039K06+          TGTTTTCGCTTTCCAATAAAAGTGAGTTGGGAGTCACACCCAGATATTCGACCTTTTAGG
                      ____________________________________________________________
consensus             TGTTTTCGCTTTCCAATAAAAGTGAGTTGGGAGTCACACCCAGATATTCGACCTTTTAGG
 
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rJMSF024L20+                                   CACACAAAGATAATGGAAGTGAACATCCTCTCCAA
rJMSF011N01+          CATTGTAAACTCATAACCAAACTTACACACAAAGATAATGGAAGTGAACATCCTCTCCAA
rJMSF039K06+          CATTGTAAACTCATAACCAAACTTACACACAAAGATAATGGAAGTGAACATCCTCTCCAA
                      ____________________________________________________________
consensus             CATTGTAAACTCATAACCAAACTTACACACAAAGATAATGGAAGTGAACATCCTCTCCAA
 
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rJMSF024L20+          NCCGAATGTTTGATTGGCAGACTATATGATGAGGAATTTGATGATGGCTTTGACGATNCG
rJMSF011N01+          ACCGAATGTTTGATTGGCAGACTATATGATGAGGAATTTGATGATGGCTTTGACGATACG
rJMSF039K06+          ACCGAATGTTTGATTGGCAGACTATATGATGAGGAATTTGATGATGGCTTTGACGATACG
                      ____________________________________________________________
consensus             ACCGAATGTTTGATTGGCAGACTATATGATGAGGAATTTGATGATGGCTTTGACGATACG
 
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rJMSF024L20+          GAACTTGTANGCTTTGCGT                                         
rJMSF011N01+          GAACTTGTATGCTTTGCGTACATACCGTTTAGTAGTCTGTGGCCTAAATCTAAGGCTATC
rJMSF039K06+          GAACTTGTATGCTTTGCGTACATACCGTTTAGTAGTCTGTGGCCTAAATCTAAGGCTATC
                      ____________________________________________________________
consensus             GAACTTGTATGCTTTGCGTACATACCGTTTAGTAGTCTGTGGCCTAAATCTAAGGCTATC
 
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rJMSF011N01+          ACGGATACTACTACTCCCAATCATTATTTGGTATTCGAGGCAGCATTTCAAGAGTTGGAA
rJMSF039K06+          ACGGATACTACTACTCCCAATCATTATTTGGTATTCGAGGCAGCATTTCAAGAGTTGGAA
                      ____________________________________________________________
consensus             ACGGATACTACTACTCCCAATCATTATTTGGTATTCGAGGCAGCATTTCAAGAGTTGGAA
 
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rJMSF011N01+          TTTTCAAACCATTTCAATGCCGAAGATTGGGAAATTTCAACAGATTGGAGTTGTAGTTTG
rJMSF039K06+          TTTTCAAACCATTTCAATGCCGAAGATTGGGAAATTTCAACAGATTGGAGTTGTAGTTTG
                      ____________________________________________________________
consensus             TTTTCAAACCATTTCAATGCCGAAGATTGGGAAATTTCAACAGATTGGAGTTGTAGTTTG
 
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rJMSF011N01+          CTGTATAAAGATGATAAATCATTAATTGAAGAATTACAGCGAAAAAGGGAGAATGGTTCT
rJMSF039K06+          CTGTATAAAGATGATAAATCATTAATTGAAGAATTACAGCGAAAAAGGGAGAATGGTTCT
                      ____________________________________________________________
consensus             CTGTATAAAGATGATAAATCATTAATTGAAGAATTACAGCGAAAAAGGGAGAATGGTTCT
 
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rJMSF011N01+          AGCGAGAGTGATTCAGATGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA 
rJMSF039K06+          AGCGAGAGTGATTCAGATGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAT
                      ____________________________________________________________
consensus             AGCGAGAGTGATTCAGATGAAGATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAT