Contig 004342:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF035K05Sequence589005127 (4)291004342 (3)
JMSF027M04Sequence545005127 (4)552004342 (3)
JMSF039J15Sequence665005127 (4)755004342 (3)ref|XP_009617642.1|4e-18PREDICTED: uncharacterized protein LOC104109944 isoform X2 [Nicotiana tomentosi

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF039J15+ ATNTTTTGGAAGAAAATAATCAAGNTNTTGATCAA
                      ____________________________________________________________
consensus ATNTTTTGGAAGAAAATAATCAAGNTNTTGATCAA
 
. : . : . : . : . : . :
rJMSF039J15+ ATTTCAACAAACCTTTCAACATATAAGNTGCNGGNTAACGTTGNCCTTTTNTTTCGTACA
                      ____________________________________________________________
consensus ATTTCAACAAACCTTTCAACATATAAGNTGCNGGNTAACGTTGNCCTTTTNTTTCGTACA
 
. : . : . : . : . : . :
rJMSF039J15+ AGGNACAANATAACTGCNATCCTCAACGAAATGNGCNATNTGCCTGGGNTCNTGNGCCNA
                      ____________________________________________________________
consensus AGGNACAANATAACTGCNATCCTCAACGAAATGNGCNATNTGCCTGGGNTCNTGNGCCNA
 
. : . : . : . : . : . :
rJMSF027M04+ GTAGTATTTTGCCAAATTCA
rJMSF039J15+ ATGCCCCCGCTTCCTGNGTTTNTTGNTGAAGNGNTTNCTNGTAGTNTTTTGCCAAATTCA
                      ____________________________________________________________
consensus ATGCCCCCGCTTCCTGNGTTTNTTGNTGAAGNGNTTNCTNGTAGTATTTTGCCAAATTCA
 
. : . : . : . : . : . :
rJMSF027M04+ ACTCNGTCCCTGATGTTTGGNTCNTCNAGCGGGNTCCNGNTGAAACNGGAACCNGGATGT
rJMSF039J15+ ACTCNGTCCCTGANGTTTGGNTCATCNAGNGGGNTCCNGNTGAAACNGGAACCNGGATGT
                      ____________________________________________________________
consensus ACTCNGTCCCTGATGTTTGGNTCATCNAGCGGGNTCCNGNTGAAACNGGAACCNGGATGT
 
. : . : . : . : . : . :
rJMSF027M04+ TGACNGNGATTTNTCNGNGNTGAGNTGAATTACTGGNGNGNGTAAGTAGNCCNTTTTTTT
rJMSF039J15+ TGACNGNGATTTTTCNGNGNTGAGTTGAATTACTGGNGNGNGTAAGTAGNCCNTTTTTTT
                      ____________________________________________________________
consensus TGACNGNGATTTTTCNGNGNTGAGTTGAATTACTGGNGNGNGTAAGTAGNCCNTTTTTTT
 
. : . : . : . : . : . :
rJMSF027M04+ GCNGTAAANGCATAAGAAGNTGGCNGGCCTTTCCGGNTTTTGTACNCAACNCAAGTTGGG
rJMSF039J15+ GCNGTAAANGCNTAAGAAGNTGGCNGGCCTTTCCGGNTTTTGTACNCAACNCNAGTTGGG
                      ____________________________________________________________
consensus GCNGTAAANGCATAAGAAGNTGGCNGGCCTTTCCGGNTTTTGTACNCAACNCAAGTTGGG
 
. : . : . : . : . : . :
rJMSF027M04+ TCCCGNGGGNTAAAGAATACCTTAGATAACCTNTTTNGGAAGNTGAAATNTTTGCTGTNC
rJMSF039J15+ TCCCGNGGGNTAAAGAATACCTTAGNTAACCTNTTTNGGAAGNTGAAATNTTTGCTGTNC
                      ____________________________________________________________
consensus TCCCGNGGGNTAAAGAATACCTTAGATAACCTNTTTNGGAAGNTGAAATNTTTGCTGTNC
 
. : . : . : . : . : . :
rJMSF027M04+ CNGATNCTGNGCCCNAGCCCTGGNTAATAACNGCCTCNTTGTNGGTTAAACGTCAGCCNG
rJMFF035K05+ GCCCNAGCCCTGGATAATAACAGCCTCATTGTNGGTTAAACGTCAGCCNG
rJMSF039J15+ CNGATNCTGNGCCCNAGCCCTGGNTAATAACNGCCTCNTTGTCGGTTAAACGTCAGCCNG
                      ____________________________________________________________
consensus CNGATNCTGNGCCCNAGCCCTGGATAATAACAGCCTCATTGTCGGTTAAACGTCAGCCNG
 
. : . : . : . : . : . :
rJMSF027M04+ TNTNTAATCNGNTTGCNTTNTAGAAAGCNAGCNAGCTAGNTAAAAAAAAAAAATTATGAG
rJMFF035K05+ TTTTTAATCAGATTGCNTTTTNGAAAGCAAGCAAGNTAGNTAAAAAAAAAAAATTATGAG
rJMSF039J15+ TNTTTAATCNGNTTGCCTTNTAGAAAGCNAGCNAGCTAGNTAAAAAAAAAAAATTATGAG
                      ____________________________________________________________
consensus TTTTTAATCAGATTGCCTTTTAGAAAGCAAGCAAGCTAGNTAAAAAAAAAAAATTATGAG
 
. : . : . : . : . : . :
rJMSF027M04+ TTGTAGTCTTTTTGTGTGTAAATTTTATATAACTAATGAAAACTCTGGAGTCAGTCCATA
rJMFF035K05+ TTGTAGTCTTTTTGTGTGTAAATTTTATATAACTAATGAAAACTCTGGAGTCAGTCCATA
rJMSF039J15+ TTGTAGTCTTTTTGTGTGTAAATTTTATATAACTAATGAAAACTCTGGAGTCAGTCCATA
                      ____________________________________________________________
consensus TTGTAGTCTTTTTGTGTGTAAATTTTATATAACTAATGAAAACTCTGGAGTCAGTCCATA
 
. : . : . : . : . : . :
rJMSF027M04+ GGGTTGTTATGTCCTTGTCATTTGCAGCCTTTAGCATTTGAAGATCAGTTTCTTGGTTTT
rJMFF035K05+ GGGTTGTTATGTCCTTGTCATTTGCAGCCTTTAGCATTTGAAGATCAGTTTCTTGGTTTT
rJMSF039J15+ GGGTTGTTATGTCCTTGTCATTTGCAGCCTTTAGCATTTGAAGATCAGTTTCTTGGTTTT
                      ____________________________________________________________
consensus GGGTTGTTATGTCCTTGTCATTTGCAGCCTTTAGCATTTGAAGATCAGTTTCTTGGTTTT
 
. : . : . : . : . : . :
rJMSF027M04+ GTGGTAAGGCCACATATAACATCATTTCT
rJMFF035K05+ GTGGTAAGGCCACATATAACATCATTTCTTGGTTATGAGAGCCCCACCTTGTAAGAAT
rJMSF039J15+ GTGGTAAGGCCACATATAACATCATTTCTTGGTTATGAGAGCCCCACCTTGTAAGAATTT
                      ____________________________________________________________
consensus GTGGTAAGGCCACATATAACATCATTTCTTGGTTATGAGAGCCCCACCTTGTAAGAATTT