Contig 004341:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF039J05Sequence660004341 (2)ref|XP_009772793.1|2e-126PREDICTED: probable pectate lyase 12 [Nicotiana sylvestris]865004341 (2)ref|XP_006354410.1|2e-139PREDICTED: probable pectate lyase 12-like [Solanum tuberosum]

Alignment

This contig is upended


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JMSF039J05-                                GGATCGACGATTGCTGGCGTTGCGACTCCAATTGGCAGT
                      ____________________________________________________________
consensus                                  GGATCGACGATTGCTGGCGTTGCGACTCCAATTGGCAGT
 
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JMSF039J05-           TGAACCGGCAGCGGCTGGCGGACTGCGGCATTGGGTTCGGGCAATACGCCGTCGGCGGGA
                      ____________________________________________________________
consensus             TGAACCGGCAGCGGCTGGCGGACTGCGGCATTGGGTTCGGGCAATACGCCGTCGGCGGGA
 
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JMSF039J05-           AGGGCGGGCGTTACTACGTGGTCACCGACTCGTCGGACCCGGACCCGGTGAACCCGCCGC
                      ____________________________________________________________
consensus             AGGGCGGGCGTTACTACGTGGTCACCGACTCGTCGGACCCGGACCCGGTGAACCCGCCGC
 
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JMSF039J05-           CGGGGACTCTCCGCTACGGCGTGATCCAAACGGAGCCGCTGTGGATCGTGTTCGCCGCCA
                      ____________________________________________________________
consensus             CGGGGACTCTCCGCTACGGCGTGATCCAAACGGAGCCGCTGTGGATCGTGTTCGCCGCCA
 
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JMSF039J05-           GCATGGTCATCCAGCTCTCGGAGGAGCTCATATTCAACTCCTACAAGACCCTCGACGGCC
                      ____________________________________________________________
consensus             GCATGGTCATCCAGCTCTCGGAGGAGCTCATATTCAACTCCTACAAGACCCTCGACGGCC
 
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JMSF039J05-           GCGGCGCCAACGTCCACATCACCGGCGGCGGCTGCATAACGTTGCAGTACATTTCCAACG
                      ____________________________________________________________
consensus             GCGGCGCCAACGTCCACATCACCGGCGGCGGCTGCATAACGTTGCAGTACATTTCCAACG
 
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JMSF039J05-           TCATCATCCACAACATTCACATCCACCATTGTTACCAGTCCGGCGAGACCAATATCCGGT
                      ____________________________________________________________
consensus             TCATCATCCACAACATTCACATCCACCATTGTTACCAGTCCGGCGAGACCAATATCCGGT
 
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JMSF039J05-           CCAGTCCCACTCACTTCGGGTGGCGAACCTTGTCGGACGGCGACGGGATATCCATCTTCG
rJMSF039J05+                                             GACGGCGACGGGATATCCATCTTCG
                      ____________________________________________________________
consensus             CCAGTCCCACTCACTTCGGGTGGCGAACCTTGTCGGACGGCGACGGGATATCCATCTTCG
 
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JMSF039J05-           GGTCGAGGGACATATGGATCGATCACTGCTCTCTCTCGCACTGCAAGGACGGGCTGATCG
rJMSF039J05+          GGTCGAGGGACATATGGATCGATCACTGCTCTCTCTCGCACTGCAAGGACGGGCTGATCG
                      ____________________________________________________________
consensus             GGTCGAGGGACATATGGATCGATCACTGCTCTCTCTCGCACTGCAAGGACGGGCTGATCG
 
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JMSF039J05-           ACGCCGTGATGGGTTCCACCGGAATCACCATATCCAACAACCACTTCTCCCACCATAACG
rJMSF039J05+          ACGCCGTGATGGGTTCCACCGGAATCACCATATCCAACAACCACTTCTCCCACCATAACG
                      ____________________________________________________________
consensus             ACGCCGTGATGGGTTCCACCGGAATCACCATATCCAACAACCACTTCTCCCACCATAACG
 
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JMSF039J05-           AGGTGATGTTGTTGGGTCACAGCGACGATTACTTGCCGGACTCCGGCATGCAAGTCACCA
rJMSF039J05+          AGGTGATGTTGTTGGGTCACAGCGACGATTACTTGCCGGACTCCGGCATGCAAGTCACCA
                      ____________________________________________________________
consensus             AGGTGATGTTGTTGGGTCACAGCGACGATTACTTGCCGGACTCCGGCATGCAAGTCACCA
 
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JMSF039J05-           TTGCGTTTAACCACTTCGGGA                                       
rJMSF039J05+          TTGCGTTTAACCACTTCGGGAAGAAGCTTATTCAGAGAATGCCGAGGTGTAGGCGAGGGT
                      ____________________________________________________________
consensus             TTGCGTTTAACCACTTCGGGAAGAAGCTTATTCAGAGAATGCCGAGGTGTAGGCGAGGGT
 
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rJMSF039J05+          ATATCCATGTAGTGAACAATGATTTCACGAGGTGGGAGATGTACGCCATTGGAGGGAGCG
                      ____________________________________________________________
consensus             ATATCCATGTAGTGAACAATGATTTCACGAGGTGGGAGATGTACGCCATTGGAGGGAGCG
 
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rJMSF039J05+          GCAATCCTACCATCAATAGTCAAGGAAATCGGTACATTGCACCCTTTGACCGCAACGCCA
                      ____________________________________________________________
consensus             GCAATCCTACCATCAATAGTCAAGGAAATCGGTACATTGCACCCTTTGACCGCAACGCCA
 
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rJMSF039J05+          AAGAGGTGACAAAAAGAGTGGACACATCAGAAGAAAAGTGGCGGAACTGGAATTGGAGGA
                      ____________________________________________________________
consensus             AAGAGGTGACAAAAAGAGTGGACACATCAGAAGAAAAGTGGCGGAACTGGAATTGGAGGA
 
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rJMSF039J05+          GCGAGGGGGACGTAATGGCAAACGGAGCCTACTTTGTAGCTTCGGGTGAGGAATTGGAAG
                      ____________________________________________________________
consensus             GCGAGGGGGACGTAATGGCAAACGGAGCCTACTTTGTAGCTTCGGGTGAGGAATTGGAAG
 
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rJMSF039J05+          TGAAATATGAGAAAGCGTACAGTGTGGAACCCAAATCTGCTAATTTCCTTGACCAAATCA
                      ____________________________________________________________
consensus             TGAAATATGAGAAAGCGTACAGTGTGGAACCCAAATCTGCTAATTTCCTTGACCAAATCA
 
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rJMSF039J05+          CCATGAACGCCGGCGTTCTTGTTGGCAGGGGGAGGAGCAGCGGCAAGTGGACTGCTGCTG
                      ____________________________________________________________
consensus             CCATGAACGCCGGCGTTCTTGTTGGCAGGGGGAGGAGCAGCGGCAAGTGGACTGCTGCTG
 
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rJMSF039J05+          GGAATGTCACCGCCGGCGGCGATGATGACGGGAACTACTTGATGGCAATTTCCGGCGACC
                      ____________________________________________________________
consensus             GGAATGTCACCGCCGGCGGCGATGATGACGGGAACTACTTGATGGCAATTTCCGGCGACC
 
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rJMSF039J05+          CGGACGACTACGATGGCGATTACGCCGGGGGCTACATGCTTTGCCCCAACTCCATTCTCT
                      ____________________________________________________________
consensus             CGGACGACTACGATGGCGATTACGCCGGGGGCTACATGCTTTGCCCCAACTCCATTCTCT
 
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rJMSF039J05+          TGTATTATCTGCTAGCCATGTTAACCTTCATGTTATTGTAGTAAGAATTCAAGAGGAAAG
                      ____________________________________________________________
consensus             TGTATTATCTGCTAGCCATGTTAACCTTCATGTTATTGTAGTAAGAATTCAAGAGGAAAG
 
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rJMSF039J05+          CCCGTACGAGCTTAACTCACTGATTCAGTAGGCAGTATTTGAGAAAAGAAGAATTCAAGA
                      ____________________________________________________________
consensus             CCCGTACGAGCTTAACTCACTGATTCAGTAGGCAGTATTTGAGAAAAGAAGAATTCAAGA