Contig 004340:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF039I17+                                                   TTCATCAATGGCGGAGGAC
                      ____________________________________________________________
consensus                                                      TTCATCAATGGCGGAGGAC
 
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rJMSF039I17+          CCTGAATTTAACAAGTTAGAGCCAAGGTCCTTCAGGTCTCAATCATTTACCAGACCTAAC
                      ____________________________________________________________
consensus             CCTGAATTTAACAAGTTAGAGCCAAGGTCCTTCAGGTCTCAATCATTTACCAGACCTAAC
 
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rJMSF051E12+                                                        CGCCGAAAAAACCA
rJMSF039I17+          TCCACCTCCCCTTCTCCAAACAAGCTTTCCCCTTCACCGTCGCCGTCGCCGAAAAAACCA
                      ____________________________________________________________
consensus             TCCACCTCCCCTTCTCCAAACAAGCTTTCCCCTTCACCGTCGCCGTCGCCGAAAAAACCA
 
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rJMSF051E12+          TCCCCTTCACCGGAATCCTCCCAGCAGCTGAGGATTCTTGAAGAGATGGCGAGAAAGACG
rJMSF039I17+          TCCCCTTCACCGGAATCCTCCCAGCAGCTGAGGATTCTTGAAGAGATGGCGAGAAAGACG
                      ____________________________________________________________
consensus             TCCCCTTCACCGGAATCCTCCCAGCAGCTGAGGATTCTTGAAGAGATGGCGAGAAAGACG
 
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rJMSF051E12+          AAGACGACTCCCGCTCCTCCCCCGCCGCCTCCCCATTATTTCCTCGGCAAGTCGTCGTCG
rJMSF039I17+          AAGACGACTCCCGCTCCTCCCCCGCCGCCTCCCCATTATTTCCTCGGCAAGTCGTCGTCG
                      ____________________________________________________________
consensus             AAGACGACTCCCGCTCCTCCCCCGCCGCCTCCCCATTATTTCCTCGGCAAGTCGTCGTCG
 
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rJMSF051E12+          ATGAAATCAAGCGCGCTAGCCGCCAAGAAGAAGGAAGATTATGGGTCTTCTTCAGAGAAG
rJMSF039I17+          ATGAAATCAAGCGCGCTAGCCGCCAAGAAGAAGGAAGATTATGGGTCTTCTTCAGAGAAG
                      ____________________________________________________________
consensus             ATGAAATCAAGCGCGCTAGCCGCCAAGAAGAAGGAAGATTATGGGTCTTCTTCAGAGAAG
 
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rJMSF051E12+          GAGCTGCGGCGAAGCGTTAGGAGTGTCCCGGCGGAAATACCAATACCCGACGAGGTGAAA
rJMSF039I17+          GAGCTGCGGCGAAGCGTTAGGAGTGTCCCGGCGGAAATACCAATACCCGACGAGGTGAAA
                      ____________________________________________________________
consensus             GAGCTGCGGCGAAGCGTTAGGAGTGTCCCGGCGGAAATACCAATACCCGACGAGGTGAAA
 
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rJMSF051E12+          GGTGAAGAAGCTGCCGGGAAATCTGCAAGAACATTATCATTTACTCCGTTCAACGGGCGA
rJMSF039I17+          GGTGAAGAAGCTGCCGGGAAATCTGCAAGAACATTATCATTTACTCCGTTCAACGGGCGA
                      ____________________________________________________________
consensus             GGTGAAGAAGCTGCCGGGAAATCTGCAAGAACATTATCATTTACTCCGTTCAACGGGCGA
 
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rJMSF051E12+          GGCAGGTCATATGCCATTGCAAAAGCCAAAGAAAATTTTGTGAAGAAAGAAGGCGAAGGG
rJMSF039I17+          GGCAGGTCATATGCCATTGCAAAAGCCAAAGAAAATTTTGTGAAGAAAGAAGGCGAAGGG
                      ____________________________________________________________
consensus             GGCAGGTCATATGCCATTGCAAAAGCCAAAGAAAATTTTGTGAAGAAAGAAGGCGAAGGG
 
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rJMSF051E12+          GAAGGCGAAGAGTCAGAGATGGAAGACGAAGATGATTTCTTCGACGAGAATATGGTGGCA
rJMSF039I17+          GAAGGCGAAGAGTCAGAGATGGAAGACGAAGATGATTTCTTCGACGAGAATATGGTGGCA
                      ____________________________________________________________
consensus             GAAGGCGAAGAGTCAGAGATGGAAGACGAAGATGATTTCTTCGACGAGAATATGGTGGCA
 
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rJMSF051E12+          GAAAATGGTAGTGAATATAACAGTAGTGGAGATGGAGGGCCGCCGGATGTTGATAAGAAA
rJMSF039I17+          GAAAATGGTAGTGAATATAACAGTAGTGGAGATGGAGGGCCGCCGGATGTTGATAAGAAA
                      ____________________________________________________________
consensus             GAAAATGGTAGTGAATATAACAGTAGTGGAGATGGAGGGCCGCCGGATGTTGATAAGAAA
 
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rJMSF051E12+          GCTGACGAGTTTATAGCCAAATTTAGAGAGCAGATCAGACTGCAGAGGATTGAATCTATC
rJMSF039I17+          GCTGACGAGTTTATAGCCAAATTTAGAGAGCAGATCAGACTGCAGAGGATTGAATCTATC
                      ____________________________________________________________
consensus             GCTGACGAGTTTATAGCCAAATTTAGAGAGCAGATCAGACTGCAGAGGATTGAATCTATC
 
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rJMSF051E12+          CGGCGATCGGCCGGCCAGACTGCAGCGGCTAGAAACCAGCTTGTAAGATGAGCTGAGGAG
rJMSF039I17+          CGGCGATCGGCCGGCCAGACTGCAGCGGCTAGAAACCAGCTTGTAAGATGAGCTGAGGAG
                      ____________________________________________________________
consensus             CGGCGATCGGCCGGCCAGACTGCAGCGGCTAGAAACCAGCTTGTAAGATGAGCTGAGGAG
 
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rJMSF051E12+          GGCAGGCCGGCCTTCTGGGAGTTTATCAATTCTGCGTTTTCTTTTTTCTTTTCAATCCCA
rJMSF039I17+          GGCAGGCCGGCCTTCTGGGAGTTTATCAATTCTGCGTTTTCTTTTTTCTTTTCAATCCCA
                      ____________________________________________________________
consensus             GGCAGGCCGGCCTTCTGGGAGTTTATCAATTCTGCGTTTTCTTTTTTCTTTTCAATCCCA
 
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rJMSF051E12+          TTATATTATGCATTAGAGAAAGCTTTCTTTTGTTTGTGATCAATC               
rJMSF039I17+          TTATATTATGCATTAGAGAAAGCTTTCTTTTGTTTGTGATCAATCATGTTCCCCAAATTT
                      ____________________________________________________________
consensus             TTATATTATGCATTAGAGAAAGCTTTCTTTTGTTTGTGATCAATCATGTTCCCCAAATTT