Contig 004339:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013B23Sequence222003686 (5)719004339 (4)emb|CDX97868.1|7e-39BnaC04g40710D [Brassica napus]
JMSF024J08Sequence696003686 (5)ref|XP_010650926.1|123PREDICTED: uncharacterized protein LOC100253483 [Vitis vinifera]747004339 (4)emb|CDX97868.1|3e-45BnaC04g40710D [Brassica napus]
JMSF026G16Sequence623003686 (5)ref|XP_010650926.1|117PREDICTED: uncharacterized protein LOC100253483 [Vitis vinifera]803004339 (4)emb|CDX97868.1|1e-50BnaC04g40710D [Brassica napus]
JMSF039H19Sequence689003686 (5)ref|XP_010650926.1|122PREDICTED: uncharacterized protein LOC100253483 [Vitis vinifera]842004339 (4)emb|CDY02002.1|3e-44BnaC04g14990D [Brassica napus]

Alignment

This contig is upended


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rJMSF039H19+                                                                    AT
                      ____________________________________________________________
consensus                                                                       AT
 
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rJMSF039H19+          AAATGCAAAGATGGAGTCTGATGATTGTGTGGATTATTTTAGAACCAGAGTTGCTTTATC
                      ____________________________________________________________
consensus             AAATGCAAAGATGGAGTCTGATGATTGTGTGGATTATTTTAGAACCAGAGTTGCTTTATC
 
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rJMSF024J08+                                         CCCTTTTGCTCGCCAATTATGCTCAATTT
rJMSF026G16+                   ATCGCCCAAGAACCCAACAATGCCCTTTTGCTCGCCAATTATGCTCAATTT
rJMSF039H19+          CAAACCGGAATCGCCCAAGAACCCAACAATGCCCTTTTGCTCGCCAATTATGCTCAATTT
                      ____________________________________________________________
consensus             CAAACCGGAATCGCCCAAGAACCCAACAATGCCCTTTTGCTCGCCAATTATGCTCAATTT
 
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rJMSF024J08+          C-TTTACCTCGTTGGTCAAGACTATGACAGAGCAGATGAATACTTCAAAAGAGCTGCAGA
rJMSF026G16+          C-TTTACCTCGTTGGTCAAGACTATGACAGAGCAGATGAATACTTCAAAAGAGCTGCAGA
rJMSF013B23+            TTTACCTCGTTGGTCAAGACTATGACAGAGCAGATGAATACTTCAAAAGAGCTGCAGA
rJMSF039H19+          CTTTTACCTCGTTGGTCAAGACTATGACAGAGCAGATGAATACTTCAAAAGAGCTGCAGA
                      ____________________________________________________________
consensus             C-TTTACCTCGTTGGTCAAGACTATGACAGAGCAGATGAATACTTCAAAAGAGCTGCAGA
 
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rJMSF024J08+          GGTGGAGCATAAGGATGCAGAGGCATTGAACAAATATGCAACTTTCCTTTGGAAAGCTAG
rJMSF026G16+          GGTGGAGCATAAGGATGCAGAGGCATTGAACAAATATGCAACTTTCCTTTGGAAAGCTAG
rJMSF013B23+          GGTGGAGCATAAGGATGCAGAGGCATTGAACAAATATGCAACTTTCCTTTGGAAAGCTAG
rJMSF039H19+          GGTGGAGCATAAGGATGCAGAGGCATTGAACAAATATGCAACTTTCCTTTGGAAAGCTAG
                      ____________________________________________________________
consensus             GGTGGAGCATAAGGATGCAGAGGCATTGAACAAATATGCAACTTTCCTTTGGAAAGCTAG
 
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rJMSF024J08+          GAATGACCTTTGGGCTGCAGAAGAGACCTTCCAGGCAGCCATAGATGCTGAGCCTACTAA
rJMSF026G16+          GAATGACCTTTGGGCTGCAGAAGAGACCTTCCAGGCAGCCATAGATGCTGAGCCTACTAA
rJMSF013B23+          GAATGACCTTTGGGCTGCAGAAGAGACCTTCCAGGCAGCCATAGATGCTGAGCCTACTAA
rJMSF039H19+          GAATGACCTTTGGGCTGCAGAAGAGACCTTCCAGGCAGCCATAGATGCTGAGCCTACTAA
                      ____________________________________________________________
consensus             GAATGACCTTTGGGCTGCAGAAGAGACCTTCCAGGCAGCCATAGATGCTGAGCCTACTAA
 
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rJMSF024J08+          TTCCTTCTATGCAGCTAATTATGCTCAATTTCTCTGGAACACTGGCGGCGAAGACACATG
rJMSF026G16+          TTCCTTCTATGCAGCTAATTATGCTCAATTTCTCTGGAACACTGGCGGCGAAGACACATG
rJMSF013B23+          TTCCTTCTATGCAGCTAATTATGCTCAATTTCTCTGGAACACTGGCGGCGAAGACACATG
rJMSF039H19+          TTCCTTCTATGCAGCTAATTATGCTCAATTTCTCTGGAACACTGGCGGCGAAGACACATG
                      ____________________________________________________________
consensus             TTCCTTCTATGCAGCTAATTATGCTCAATTTCTCTGGAACACTGGCGGCGAAGACACATG
 
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rJMSF024J08+          CTTTCCTCTCGACTCCCTTGATGAAAATGACGACATTTGATCCCAATCAACAGAAATAAA
rJMSF026G16+          CTTTCCTCTCGACTCCCTTGATGAAAATGACGACATTTGATCCCAATCAACAGAAATAAA
rJMSF013B23+          CTTTCCTCTCGACTCCCTTGATGAAAATGACGACATTTGATCCCAATCAACAGAAATAAA
rJMSF039H19+          CTTTCCTCTCGACTCCCTTGATGAAAATGACGACATTTGATCCCAATCAACAGAAATAAA
                      ____________________________________________________________
consensus             CTTTCCTCTCGACTCCCTTGATGAAAATGACGACATTTGATCCCAATCAACAGAAATAAA
 
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rJMSF024J08+          CGAAGAAAAACAAGGAGAGGAATAAGGGGGAAGAAAGCAATGCTTTATTGACAAAATGCT
rJMSF026G16+          CGAAGAAAAACAAGGAGAGGAATAAGGGGGAAGAAAGCAATGCTTTATTGACAAAATGCT
rJMSF013B23+          CGAAGAAAAACAAGGAGAGGAATAAGGGGGAAGAAAGCAATGCTTTATTGACAAAATGCT
rJMSF039H19+          CGAAGAAAAACAAGGAGAGGAATAAGGGGGAAGAAAGCAATGCTTTATTGACAAAATGCT
                      ____________________________________________________________
consensus             CGAAGAAAAACAAGGAGAGGAATAAGGGGGAAGAAAGCAATGCTTTATTGACAAAATGCT
 
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rJMSF024J08+          ATTAGGAAATGAAGAAGATGTAGACCATCATCATTTCTTTTCTGCATGGGCTGTTACAAA
rJMSF026G16+          ATTAGGAAATGAAGAAGATGTAGACCATCATCATTTCTTTTCTGCATGGGCTGTTACAAA
rJMSF013B23+          ATTAGGAAATGAAGAAGATGTAGACCATCATCATTTCTTTTCTGCATGGGCTGTTACAAA
rJMSF039H19+          ATTAGGAAATGAAGAAGATGTAGACCATCATCATTTCTTTTCTGCATGGGCTGTTACAAA
                      ____________________________________________________________
consensus             ATTAGGAAATGAAGAAGATGTAGACCATCATCATTTCTTTTCTGCATGGGCTGTTACAAA
 
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rJMSF024J08+          AGGCATTTGCCTTTCAGTTTCAGTTACTATCCATCTTTCAAAAGCTCGTAAGATGGGGAT
rJMSF026G16+          AGGCATTTGCCTTTCAGTTTCAGTTACTATCCATCTTTCAAAAGCTCGTAAGATGGGGAT
rJMSF013B23+          AGGCATTTGCCTTTCAGTTTCAGTTACTATCCATCTTTCAAAAGCTCGTAAGATGGGGAT
rJMSF039H19+          AGGCATTTGCCTTTCAGTTTCAGTTACTATCCATCTTTCAAAAGCTCGTAAGATGGGGAT
                      ____________________________________________________________
consensus             AGGCATTTGCCTTTCAGTTTCAGTTACTATCCATCTTTCAAAAGCTCGTAAGATGGGGAT
 
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rJMSF024J08+          GGTGAAAGCATGAAATTCTTGGTTCGGAAATGCGTTATAAACCACAAAGGCTGATGATGG
rJMSF026G16+          GGTGAAAGCATGAAATTCTTGGTTCGGAAATGCGTTATAAACCACAAAGGCTGATGATGG
rJMSF013B23+          GGTGAAAGCATGAAATTCTTGGTTCGGAAATGCGTTATAAACCACAAAGGCTGATGATGG
rJMSF039H19+          GGTGAAAGCATGAAATTCTTGGTTCGGAAATGCGTTATAAACCACAAAGGCTGATGATGG
                      ____________________________________________________________
consensus             GGTGAAAGCATGAAATTCTTGGTTCGGAAATGCGTTATAAACCACAAAGGCTGATGATGG
 
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rJMSF024J08+          CTGGAGCCTGTTCTATCAGACAATAATCACAACAAAGATGGAGAGAAAGAGAGGGATGCC
rJMSF026G16+          CTGGAGCCTGTTCTATCAGACAATAATCACAACAAAGATGGAGAGAAAGAGAGGGATGCC
rJMSF013B23+          CTGGAGCCTGTTCTATCAGACAATAATCACAACAAAGATGGAGAGAAAGAGAGGGATGCC
rJMSF039H19+          CTGGAGCCTGTTCTATCAGACAATAATCACAACAAAGATGGAGAGAAAGAGAGGGATGCC
                      ____________________________________________________________
consensus             CTGGAGCCTGTTCTATCAGACAATAATCACAACAAAGATGGAGAGAAAGAGAGGGATGCC
 
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rJMSF024J08+          TGCCTCTGCTCTGCTTAGTTCATTTCTGTTTACTTTAATTTTCTCAAAACTTTTCATGTT
rJMSF026G16+          TGCCTCTGCTCTGCTTAGTTCATTTCTGTTTACTTTAATTTTCTCAAAACTTTTCATGTT
rJMSF013B23+          TGCCTCTGCTCTGCTTAGTTCATTTCTGTTTACTTTAATTTTCTCAAAACTTTTCATGTT
rJMSF039H19+          TGCCTCTGCTCTGCTTAGTTCATTTCTGTTTACTTTAATTTTCTCAAAACTTTTCATGTT
                      ____________________________________________________________
consensus             TGCCTCTGCTCTGCTTAGTTCATTTCTGTTTACTTTAATTTTCTCAAAACTTTTCATGTT
 
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rJMSF024J08+          CTGCACAGTTCATCTGAGTTTTCCATAGATCAACCTTGTCATAGAATAGCA         
rJMSF026G16+          CTGCACAGTTCATCTGAGTTTTCCATAGATCAACCTTGTCATAGAATAGCA         
rJMSF013B23+          CTGCACAGTTCATCTGAGTTTTCCATAGATCAACCTTGTCATAGAATAGCA         
rJMSF039H19+          CTGCACAGTTCATCTGAGTTTTCCATAGATCAACCTTGTCATAGAATAGCATGGCAGATG
                      ____________________________________________________________
consensus             CTGCACAGTTCATCTGAGTTTTCCATAGATCAACCTTGTCATAGAATAGCATGGCAGATG