| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF032E08 | Sequence | 555 | 010836 (3) | emb|CDO99464.1| | 2e-39 | unnamed protein product [Coffea canephora] | 630 | 004338 (3) | ref|XP_009780205.1| | 7e-84 | PREDICTED: transcription factor VOZ1-like [Nicotiana sylvestris] ref|XP_00978020 |
| JMSF014L17 | Sequence | 511 | 010836 (3) | emb|CDO99464.1| | 1e-45 | unnamed protein product [Coffea canephora] | 740 | 004338 (3) | ref|XP_009780205.1| | 4e-95 | PREDICTED: transcription factor VOZ1-like [Nicotiana sylvestris] ref|XP_00978020 |
| JMSF039H07 | Sequence | 668 | 010836 (3) | emb|CDO99464.1| | 4e-46 | unnamed protein product [Coffea canephora] | 899 | 004338 (3) | ref|XP_009780205.1| | 2e-121 | PREDICTED: transcription factor VOZ1-like [Nicotiana sylvestris] ref|XP_00978020 |
This contig is upended
. : . : . : . : . : . :
rJMSF039H07+ CGCTCAGTGCAAAAGCACAGGGAAAGGATGTCGGTGTTCCAGAGTGTGAGGGTGCAGCA
____________________________________________________________
consensus CGCTCAGTGCAAAAGCACAGGGAAAGGATGTCGGTGTTCCAGAGTGTGAGGGTGCAGCA
. : . : . : . : . : . :
rJMSF014L17+ GTCGAAGGTGAA
rJMSF039H07+ ACTGCAAAATCCCCATGGAATGCGCCTGAGCTTTTTGATCTTAAAGTTGTCGAAGGTGAA
____________________________________________________________
consensus ACTGCAAAATCCCCATGGAATGCGCCTGAGCTTTTTGATCTTAAAGTTGTCGAAGGTGAA
. : . : . : . : . : . :
rJMSF014L17+ ACAATTAGGGAGTGGCTTTTCTTTGACAAGCCTCGAAGAGCGTTTGAGAGTGGAAATAGA
rJMFF032E08+ TCGAAGAGCGTTTGAGAGTGGAAATAGA
rJMSF039H07+ ACAATTAGGGAGTGGCTTTTCTTTGACAAGCCTCGAAGAGCGTTTGAGAGTGGAAATAGA
____________________________________________________________
consensus ACAATTAGGGAGTGGCTTTTCTTTGACAAGCCTCGAAGAGCGTTTGAGAGTGGAAATAGA
. : . : . : . : . : . :
rJMSF014L17+ AAGCAGAGGTCATTGCCTGATTATAATGGGCGGGGGTGGCACGAGTCAAGGAAGCAGGTG
rJMFF032E08+ AAGCAGAGGTCATTGCCTGATTATAATGGGCGGGGGTGGCACGAGTCAAGGAAGCAGGTG
rJMSF039H07+ AAGCAGAGGTCATTGCCTGATTATAATGGGCGGGGGTGGCACGAGTCAAGGAAGCAGGTG
____________________________________________________________
consensus AAGCAGAGGTCATTGCCTGATTATAATGGGCGGGGGTGGCACGAGTCAAGGAAGCAGGTG
. : . : . : . : . : . :
rJMSF014L17+ ATGAAAGAGTTTGGAGGACTAAAGAGATCTTATTATATGGATCCACGACCAATGAAGAAC
rJMFF032E08+ ATGAAAGAGTTTGGAGGACTAAAGAGATCTTATTATATGGATCCACAACCAATGAAGAAC
rJMSF039H07+ ATGAAAGAGTTTGGAGGACTAAAGAGATCTTATTATATGGATCCACAACCAATGAAGAAC
____________________________________________________________
consensus ATGAAAGAGTTTGGAGGACTAAAGAGATCTTATTATATGGATCCACAACCAATGAAGAAC
. : . : . : . : . : . :
rJMSF014L17+ TTGGAGTGGCATCTCTATGAATACGAGATCAACAACTATGACACGTGCGCTTTGTATAGA
rJMFF032E08+ TTGGAGTGGCATCTCTATGAATACGAGATCAACAACTATGACACGTGCGCTTTGTATAGA
rJMSF039H07+ TTGGAGTGGCATCTCTATGAATACGAGATCAACAACTATGACACGTGCGCTTTGTATAGA
____________________________________________________________
consensus TTGGAGTGGCATCTCTATGAATACGAGATCAACAACTATGACACGTGCGCTTTGTATAGA
. : . : . : . : . : . :
rJMSF014L17+ TTGGAACTGAAGCTCGTGGATGGCAAGAAGAGCCCAAAAGGAAAAGTAAACAATCCATCT
rJMFF032E08+ TTGGAACTGAAGCTCGTGGATGGCAAGAAGAGCCCAAAAGGAAAAGTAAACAATCCATCT
rJMSF039H07+ TTGGAACTGAAGCTCGTGGATGGCAAGAAGAGCCCAAAAGGAAAAGTAAACAATCCATCT
____________________________________________________________
consensus TTGGAACTGAAGCTCGTGGATGGCAAGAAGAGCCCAAAAGGAAAAGTAAACAATCCATCT
. : . : . : . : . : . :
rJMSF014L17+ GTTGCTGATTTGCAGAAGCAAATGGGAAGACTTAACGCTGAATTCCCTCCCGACACCAAG
rJMFF032E08+ GTTGCTGATTTGCAGAAGCAAATGGGAAGACTTAACGCTGAATTCCCTCCCGACACCAAG
rJMSF039H07+ GTTGCTGATTTGCAGAAGCAAATGGGAAGACTTAACGCTGAATTCCCTCCCGACACCAAG
____________________________________________________________
consensus GTTGCTGATTTGCAGAAGCAAATGGGAAGACTTAACGCTGAATTCCCTCCCGACACCAAG
. : . : . : . : . : . :
rJMSF014L17+ CGCACCGTGAAGGGTAGGGCAAAGGCGAACGCCAAGGGTAACACTGGAAATATTCCATCT
rJMFF032E08+ CGCACCGTGAAGGGTAGGGCAAAGGCGAACGCCAAGGGTAACACTGGAAATATTCCATCT
rJMSF039H07+ CGCACCGTGAAGGGTAGGGCAAAGGCGAACGCCAAGGGTAACACTGGAAATATTCCATCT
____________________________________________________________
consensus CGCACCGTGAAGGGTAGGGCAAAGGCGAACGCCAAGGGTAACACTGGAAATATTCCATCT
. : . : . : . : . : . :
rJMSF014L17+ GCTCCAAATCCTACTGTTCCAAATTCTGAAGGGCTTTGTTATACTACTGCACCACCACCT
rJMFF032E08+ GCTCCAAATCCTACTGTTCCAAATTCTGAAGGGCTTTGTTATACTACTGCACCACCACCT
rJMSF039H07+ GCTCCAAATCCTACTGTTCCAAATTCTGAAGGGCTTTGTTATACTACTGCACCACCACCT
____________________________________________________________
consensus GCTCCAAATCCTACTGTTCCAAATTCTGAAGGGCTTTGTTATACTACTGCACCACCACCT
. : . : . : . : . : . :
rJMSF014L17+ TACGATTATGTTATCAATGATCTGAGTGGCTACTACATAACGTAGTAGGATGAATTTGGA
rJMFF032E08+ TACGATTATGTTATCAATGATCTGAGTGGCTACTACATAACGTAGTAGGATGAATTTGGA
rJMSF039H07+ TACGATTATGTTATCAATGATCTGAGTGGCTACTACATAACGTAGTAGGATGAATTTGGA
____________________________________________________________
consensus TACGATTATGTTATCAATGATCTGAGTGGCTACTACATAACGTAGTAGGATGAATTTGGA
. : . : . : . : . : . :
rJMSF014L17+ ACACTACTGTTTTCTTCTCTTCTTATTTTTTATTTATTTGGTTTGTCAGTCACATTTTTC
rJMFF032E08+ ACACTACTGTTTTCTTCTCTTCTTATTTTTTATTTATTTGGTTTGTCAGTCACAATTTTC
rJMSF039H07+ ACACTACTGTTTTCTTCTCTTCTTATTTTTTATTTATTTGGTTTGTCAGTCACATTTTTC
____________________________________________________________
consensus ACACTACTGTTTTCTTCTCTTCTTATTTTTTATTTATTTGGTTTGTCAGTCACATTTTTC
. : . : . : . : . : . :
rJMSF014L17+ ACTCCAGTCTCACATCTCAGTTAAGAAGCTGGGTTAATGTCTGAGAATTGCTAACTCCTA
rJMFF032E08+ ACTCCAGTCTCACATCTCAGTTAAGAAGCTGGGTTAATGTCTGAGAATTGCTAACTCCTA
rJMSF039H07+ ACTCCAGTCTCACATCTCAGTTAAGAAGCTGGGTTAATGTCTGAGAATTGCTAACTCCTA
____________________________________________________________
consensus ACTCCAGTCTCACATCTCAGTTAAGAAGCTGGGTTAATGTCTGAGAATTGCTAACTCCTA
. : . : . : . : . : . :
rJMSF014L17+ TTGCCATGAATGTACAGAGCTACTATTAGAAATACTCCTACTAAAATGGCTCTAATCATC
rJMFF032E08+ TT
rJMSF039H07+ TTGCCATGAATGTACAGAGCTACTATTAGAAATACTCCTACTAAAATGGCTCTAATCATC
____________________________________________________________
consensus TTGCCATGAATGTACAGAGCTACTATTAGAAATACTCCTACTAAAATGGCTCTAATCATC
. : . : . : . : . : . :
rJMSF014L17+ TTGTAGTG
rJMSF039H07+ TTGTAGTGATGATTTTTGCTGATTAATATTGGATCTGTTAATGGTTCTTGTGCTTGTATC
____________________________________________________________
consensus TTGTAGTGATGATTTTTGCTGATTAATATTGGATCTGTTAATGGTTCTTGTGCTTGTATC