Contig 004333:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024H05Sequence648003683 (2)766004333 (4)ref|XP_009780141.1|2e-102PREDICTED: U3 small nucleolar RNA-associated protein 25 [Nicotiana sylvestris]
JMSF025H05Sequence618004333 (4)ref|XP_009780141.1|1e-75PREDICTED: U3 small nucleolar RNA-associated protein 25 [Nicotiana sylvestris]
JMSF038C19Sequence670003683 (2)890004333 (4)ref|XP_009780141.1|5e-120PREDICTED: U3 small nucleolar RNA-associated protein 25 [Nicotiana sylvestris]
JMSF047K05Sequence702020104692004333 (4)ref|XP_009780141.1|1e-86PREDICTED: U3 small nucleolar RNA-associated protein 25 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF038C19+                    TACAGACAAACAATGATTTTTAGTTCCACATGTAAACCCAGATATCAATG
                      ____________________________________________________________
consensus                       TACAGACAAACAATGATTTTTAGTTCCACATGTAAACCCAGATATCAATG
 
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rJMSF024H05+                                                     AGTGGTATGTGACAATA
rJMSF038C19+          CTTTATTCAACCACCATTGCCTCAACTATGAGGGAAAGGTTAAAGTGGTATGTGACAATA
                      ____________________________________________________________
consensus             CTTTATTCAACCACCATTGCCTCAACTATGAGGGAAAGGTTAAAGTGGTATGTGACAATA
 
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rJMSF024H05+          AAGGTGTTCTACCAAAAGTAGTGCTTCAAATACGCCAGGTTTATGAACGTTTCGATACTA
rJMSF038C19+          AAGGTGTTCTACCAAAAGTAGTGCTTCAAATACGCCAGGTTTATGAACGTTTCGATACTA
                      ____________________________________________________________
consensus             AAGGTGTTCTACCAAAAGTAGTGCTTCAAATACGCCAGGTTTATGAACGTTTCGATACTA
 
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rJMSF024H05+          AGACAATAGAAGATGCAGATGAATCTCGTTTTGAATATTTTACTAAACAGGTGTATCCTA
rJMSF025H05+                                             TATTTTACTNAACAGGTGNNTCCTA
rJMSF047K05+               ATAGANGATGCAGATGAATCTCGTTTTGAATATTTTACTAAACAGGTGTATCCTA
rJMSF038C19+          AGACAATAGAAGATGCAGATGAATCTCGTTTTGAATATTTTACTAAACAGGTGTATCCTA
                      ____________________________________________________________
consensus             AGACAATAGAAGATGCAGATGAATCTCGTTTTGAATATTTTACTAAACAGGTGTATCCTA
 
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rJMSF024H05+          AGATAAAAGATTCAATACAGGGTGGCACCATGATATTCATTAGTTCTTACTTTGATTTTG
rJMSF025H05+          AGATAAAAGATTCAATACAGGGTGGCACCATGATATTCATTAGTTCTTACTTNGATNTTG
rJMSF047K05+          AGATAAAAGATTCAATACAGGGTGGCACCATGATATTCATTAGTTCTTACTTTGATTTTG
rJMSF038C19+          AGATAAAAGATTCAATACAGGGTGGCACCATGATATTCATTAGTTCTTACTTTGATTTTG
                      ____________________________________________________________
consensus             AGATAAAAGATTCAATACAGGGTGGCACCATGATATTCATTAGTTCTTACTTTGATTTTG
 
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rJMSF024H05+          TCCGGTTAAGAAATTTCCTGAAGTCACAGGAGGCGTCGTTTTGTATGCTGGGAGAGTACA
rJMSF025H05+          TCCGGTTAAGAAATTTCCNGAAGTCACAGGAGGCGTCGTTTTGTATGCTGGGAGAGTACA
rJMSF047K05+          TCCGGTTAAGAAATTTCCTGAAGTCACAGGAGGCGTCGTTTTGTATGCTGGGAGAGTACA
rJMSF038C19+          TCCGGTTAAGAAATTTCCTGAAGTCACAGGAGGCGTCGTTTTGTATGCTGGGAGAGTACA
                      ____________________________________________________________
consensus             TCCGGTTAAGAAATTTCCTGAAGTCACAGGAGGCGTCGTTTTGTATGCTGGGAGAGTACA
 
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rJMSF024H05+          CAAAACAAAGTGATATCTCTCGCGCAAGAGTTTGGTTCTTTAATGGAAATCGGAAAATCA
rJMSF025H05+          CAAAACAAAGTGATATCTCTCGCGCAAGAGTTTGGTTCTTTAATGGAAATNGGAAAATCA
rJMSF047K05+          CAAAACAAAGTGATATCTCTCGCGCAAGAGTTTGGTTCTTTAATGGAAATCGGAAAATCA
rJMSF038C19+          CAAAACAAAGTGATATCTCTCGCGCAAGAGTTTGGTTCTTTAATGGAAATCGGAAAATCA
                      ____________________________________________________________
consensus             CAAAACAAAGTGATATCTCTCGCGCAAGAGTTTGGTTCTTTAATGGAAATCGGAAAATCA
 
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rJMSF024H05+          TGCTCTACACTGAGAGAGCTCACTTCTATCACAGATACAAGATTCGTGGCATTCAAAACC
rJMSF025H05+          TGCTCTACACTGAGAGAGCTCACTTCTATCACAGATACAAGATTNGTGGCATTCAAAACC
rJMSF047K05+          TGCTCTACACTGAGAGAGCTCACTTCTATCACAGATACAAGATTCGTGGCATTCAAAACC
rJMSF038C19+          TGCTCTACACTGAGAGAGCTCACTTCTATCACAGATACAAGATTCGTGGCATTCAAAACC
                      ____________________________________________________________
consensus             TGCTCTACACTGAGAGAGCTCACTTCTATCACAGATACAAGATTCGTGGCATTCAAAACC
 
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rJMSF024H05+          TGATCATCTATTCGCTGCCAGAGAGGAAAGAAATTTACCCTGAGATTGCTAATATGCTAC
rJMSF025H05+          TGATCATCTATTCGCTGCCAGAGAGGAAAGAAATTTACCCTGAGATTGCTAATATGCTAC
rJMSF047K05+          TGATCATCTATTCGCTGCCAGAGAGGAAAGAAATTTACCCTGAGATTGCTAATATGCTAC
rJMSF038C19+          TGATCATCTATTCGCTGCCAGAGAGGAAAGAAATTTACCCTGAGATTGCTAATATGCTAC
                      ____________________________________________________________
consensus             TGATCATCTATTCGCTGCCAGAGAGGAAAGAAATTTACCCTGAGATTGCTAATATGCTAC
 
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rJMSF024H05+          AAGGCACGACTTGCACAGTTTTGTTTTCTCGCTTTGACCTCCTCCGGCTTGAAAGAATCG
rJMSF025H05+          AAGGCACGACTTGCACAGTTTTGTTTTCTCGCTTTGACCTCCTCCGGCTTGAAAGAATCG
rJMSF047K05+          AAGGCACGACTTGCACAGTTTTGTTTTCTCGCTTTGACCTCCTCCGGCTTGAAAGAATCG
rJMSF038C19+          AAGGCACGACTTGCACAGTTTTGTTTTCTCGCTTTGACCTCCTCCGGCTTGAAAGAATCG
                      ____________________________________________________________
consensus             AAGGCACGACTTGCACAGTTTTGTTTTCTCGCTTTGACCTCCTCCGGCTTGAAAGAATCG
 
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rJMSF024H05+          TCGGTTCTGCTGCTGCAAAACGGATGGTATCCTCAGACCAAGGCATGTTCATCTTTGCTT
rJMSF025H05+          TCGGTTCTGCTGCTGCAAAACGGATGGTATCCTCAGACCAAGGCATGTTCATCTTNGCTT
rJMSF047K05+          TCGGTTCTGCTGCTGCAAAACGGATGGTATCCTCAGACCAAGGCATGTTCATCTTTGCTT
rJMSF038C19+          TCGGTTCTGCTGCTGCAAAACGGATGGTATCCTCAGACCAAGGCATGTTCATCTTTGCTT
                      ____________________________________________________________
consensus             TCGGTTCTGCTGCTGCAAAACGGATGGTATCCTCAGACCAAGGCATGTTCATCTTTGCTT
 
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rJMSF024H05+          AAAATTAGATCAACAGTTGATGCATGGATCCCAGGAAGCTTGAGAGCAGTAGTTGCATGA
rJMSF025H05+          AAAATTAGATCAACAGTTGATGCATGGATCCCAGGAAGCTTGAGAGCAGTAGTTGCATGA
rJMSF047K05+          AAAATTAGATCAACAGTTGATGCATGGATCCCAGGAAGCTTGAGAGCAGTAGTTGCATGA
rJMSF038C19+          AAAATTAGATCAACAGTTGATGCATGGATCCCAGGAAGCTTGAGAGCAGTAGTTGCATGA
                      ____________________________________________________________
consensus             AAAATTAGATCAACAGTTGATGCATGGATCCCAGGAAGCTTGAGAGCAGTAGTTGCATGA
 
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rJMSF024H05+          ATTCCTTGCTCCAAAATTTTGTACCTCACAAGTTTTTCTTTCAAAATTTTTGGGAAAGAC
rJMSF025H05+          ATTCCTTGCTCCAAAATTNTGTACCTCACAAGNCTTTCTTTCANAATTTTTGGGAAAGAC
rJMSF047K05+          ATTCCTTGCTCCAAAATTTTGTACCTCACAAGTTTTTCTTTCAAAATTTTTGGGAAAGAC
rJMSF038C19+          ATTCCTTGCTCCAAAATTTTGTACCTCACAAGTTTTTCTTTCAAAATTTTTGGGAAAGAC
                      ____________________________________________________________
consensus             ATTCCTTGCTCCAAAATTTTGTACCTCACAAGTTTTTCTTTCAAAATTTTTGGGAAAGAC
 
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rJMSF024H05+          TTCACTGAATCAATCCAATTGTCATTTATTTTGCTTTCTAGTCATAGATAGGAACAACTT
rJMSF025H05+          TTCCCTGAATCNATCCAANNGTCATTTATTTTGCTNTCTAGTCATAGATAGGA       
rJMSF047K05+          TTCACTGAATCAATCCAATTGTCATTTATTTTGCTTTCTAGTCATAGATAGGAACAACTT
rJMSF038C19+          TTCACTGAATCAATCCAATTGTCATTTATTTTGCTTTCTAGTCATAGATAGGAACAACTT
                      ____________________________________________________________
consensus             TTCACTGAATCAATCCAATTGTCATTTATTTTGCTTTCTAGTCATAGATAGGAACAACTT
 
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rJMSF024H05+          GTGTACCCAATGTATTCAATCTT                                     
rJMSF047K05+          GTGTACCCAATGTATTCAATCTTTAGATTGTTGTGTT                       
rJMSF038C19+          GTGTACCCAATGTATTCAATCTTTAGATTGTTGTGTTTATTATAAACAATAATTAAAATT
                      ____________________________________________________________
consensus             GTGTACCCAATGTATTCAATCTTTAGATTGTTGTGTTTATTATAAACAATAATTAAAATT