Contig 004332:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF016B02Sequence548009473 (3)ref|XP_009772309.1|9e-48PREDICTED: glutamate receptor 3.6-like, partial [Nicotiana sylvestris]580004332 (2)ref|XP_009791964.1|1e-46PREDICTED: glutamate receptor 3.6-like [Nicotiana sylvestris]
JMSF038B09Sequence593009473 (3)ref|XP_009772309.1|1e-60PREDICTED: glutamate receptor 3.6-like, partial [Nicotiana sylvestris]531004332 (2)gb|KJB17453.1|3e-27hypothetical protein B456_003G001400 [Gossypium raimondii] gb|KJB17454.1| hypoth

Alignment

This contig is upended


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rJMSF016B02+                                                                   AGG
                      ____________________________________________________________
consensus                                                                      AGG
 
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rJMSF016B02+          CCAAGAGTTCACGAGAAATGGATGGGGTTTTGCCTTCCCGAAGGACTCTCNTCTGGCGGT
                      ____________________________________________________________
consensus             CCAAGAGTTCACGAGAAATGGATGGGGTTTTGCCTTCCCGAAGGACTCTCNTCTGGCGGT
 
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rJMSF016B02+          CGACCTGTCANCCGTGATTCTGAAACTGTNGGAGAATGGGGAGCTTCAAAGGATCCACGA
rJMSF038B09+                     CCGTGATTCTGAAACTGTCGGNGAATGGGGNGCTTCAAAGGATCCACGA
                      ____________________________________________________________
consensus             CGACCTGTCANCCGTGATTCTGAAACTGTCGGAGAATGGGGAGCTTCAAAGGATCCACGA
 
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rJMSF016B02+          CAAATGGCTGTTGAGGAGCGCTTGTACATCGCAAAACACAAAGCTTGAAGTGAACCGGCT
rJMSF038B09+          CAAATGGCTGTTGAGGAGCGCTTGTACATCGCAAAACACAAAGCTTGAAGTGAACCGGCT
                      ____________________________________________________________
consensus             CAAATGGCTGTTGAGGAGCGCTTGTACATCGCAAAACACAAAGCTTGAAGTGAACCGGCT
 
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rJMSF016B02+          TGAACTGAAGAGCTTCTCGGGTCTCTTCTTTATGTGCGGATTTGCANGCCTTTTAGCCCT
rJMSF038B09+          NGNANTGAAGAGCTTCTCGGGTCTCTTCTTTATGTGCGGATTTGCANGCCTTTTAGCCCN
                      ____________________________________________________________
consensus             TGAACTGAAGAGCTTCTCGGGTCTCTTCTTTATGTGCGGATTTGCANGCCTTTTAGCCCT
 
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rJMSF016B02+          GCTGGTGTACCTTGTTCTCGTAATACGCCAGTTCANGCAATANTACGATGAGCCCGAGCC
rJMSF038B09+          GCTGGTGTACCTTGTTCTCGTAATACGCCAGTTCANGCAATANTANGATGAGCCCGAGCC
                      ____________________________________________________________
consensus             GCTGGTGTACCTTGTTCTCGTAATACGCCAGTTCANGCAATANTACGATGAGCCCGAGCC
 
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rJMSF016B02+          GTCTTCCAGCGTAAGCTCNTCGCGGTCAGCNCGCCTCCAGACANTCCTNTCGTTCNTCGG
rJMSF038B09+          GTCTTCCAGCGTAAGCTCNTCGCGGTCAGCACGCCTCCAGACANTCCTTTCGTTCGTCGA
                      ____________________________________________________________
consensus             GTCTTCCAGCGTAAGCTCNTCGCGGTCAGCACGCCTCCAGACANTCCTTTCGTTCGTCGG
 
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rJMSF016B02+          TGAAAAGGAAAGCTCGGTAAAATGTCGGTCCAAAAGAAGGCAACTTGAAGGGGGTTCTTC
rJMSF038B09+          NGAAAAGGAAAGCTCGGTAAAATGTCGGTCCAAAAGANGGCAACTTGANGGGGGTTCTTC
                      ____________________________________________________________
consensus             TGAAAAGGAAAGCTCGGTAAAATGTCGGTCCAAAAGAAGGCAACTTGAAGGGGGTTCTTC
 
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rJMSF016B02+          AAGAAGTACTGANGAAGGTGCGTACTGAATGATTACTATGAATCANGACAGCANAAAGTT
rJMSF038B09+          AAGAAGTACTGATGAAGGTGCGTACTGAATGATTACTATGNNTCNTGNCAGCANAAAGTT
                      ____________________________________________________________
consensus             AAGAAGTACTGATGAAGGTGCGTACTGAATGATTACTATGAATCATGACAGCANAAAGTT
 
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rJMSF016B02+          GTATGTACACCCACACACACACACACACATATATATATATATATATATATAGCAGTAGTC
rJMSF038B09+          GTATGTACACCCACACACACACACACACATATATATATATATATATATATAGCAGTAGTC
                      ____________________________________________________________
consensus             GTATGTACACCCACACACACACACACACATATATATATATATATATATATAGCAGTAGTC
 
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rJMSF016B02+          TGTCTTTGACATCCTATTCTATAATGACACAATAATA                       
rJMSF038B09+          TGTCTTTGACATCCTATTCTATAATGACACAATAATATTTAGTGTATCTTTGACCATAAT
                      ____________________________________________________________
consensus             TGTCTTTGACATCCTATTCTATAATGACACAATAATATTTAGTGTATCTTTGACCATAAT