Contig 004326:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013M05Sequence486004326 (2)emb|CDP19719.1|4e-13unnamed protein product [Coffea canephora]723008476 (2)ref|XP_011086143.1|202PREDICTED: uncharacterized protein LOC105167945 [Sesamum indicum]
JMSF037E14Sequence635008476 (2)ref|XP_004232780.1|238PREDICTED: uncharacterized protein LOC101248446 [Solanum lycopersicum]732004326 (2)emb|CDP19719.1|7e-15unnamed protein product [Coffea canephora]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037E14+                                                          GTTCCCGCCGTA
                      ____________________________________________________________
consensus                                                             GTTCCCGCCGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013M05+                                                                   GTAC
rJMSF037E14+          GAATCCAAAGAAACGTCGACTGGAAATGTTTCCGAGCCGGTTCCACAACAGTCCGGGTAC
                      ____________________________________________________________
consensus             GAATCCAAAGAAACGTCGACTGGAAATGTTTCCGAGCCGGTTCCACAACAGTCCGGGTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013M05+           CCGGGAAGCCCGTTTTCGCATTATTCAAGACCGCAAGTGCAACCCGTACCCGTTTACTAC
rJMSF037E14+          CCGGGNAGCCCGTTTTCGCATTATTCAAGACCGCAAGTGCAACCCGTACCCGTTTACTAC
                      ____________________________________________________________
consensus             CCGGGAAGCCCGTTTTCGCATTATTCAAGACCGCAAGTGCAACCCGTACCCGTTTACTAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013M05+           GTGACGCCGGGTCCATTCCAGCCCGGAAATCCGATGCCCGTTGGCGCTCCATATATTCAA
rJMSF037E14+          GTGACGCCGGGTCCATTCCAGCCCGGAAATCCGATGCCCGTNGGCGCTCCATATATTCAA
                      ____________________________________________________________
consensus             GTGACGCCGGGTCCATTCCAGCCCGGAAATCCGATGCCCGTTGGCGCTCCATATATTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013M05+           CCACAATTCGCAGCCCGTCAAGGTCAAGTTCCGGTCGGGTTTTCTCATCCAGTTTCTAGC
rJMSF037E14+          CCACAATTCGCAGCCCGTCAAGGTCAAGTTCCGGTCGGGNTTTCTCATCCAGTTTCTAGC
                      ____________________________________________________________
consensus             CCACAATTCGCAGCCCGTCAAGGTCAAGTTCCGGTCGGGTTTTCTCATCCAGTTTCTAGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013M05+           ATAGCCCAATTCCAAGACGGCGGCGTTGGGCAAGCTAAGGCTTTGGACAACCATGAAATG
rJMSF037E14+          ATAGCCCAATTCCAAGACGGCGGCGTTGGGCAAGCTAAGGCTTTGGACAACCANGAAATG
                      ____________________________________________________________
consensus             ATAGCCCAATTCCAAGACGGCGGCGTTGGGCAAGCTAAGGCTTTGGACAACCATGAAATG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013M05+           TCTCAAAGGGTCGCAACCGACGGCGTGAATCTGCCGATGTTCCACGGGGTAAGAAACTCC
rJMSF037E14+          TCTCAAAGGGTCGCAACCGACGGCGTGAATCNGCCGATGTTCCACGGGGTAAGAAACTCC
                      ____________________________________________________________
consensus             TCTCAAAGGGTCGCAACCGACGGCGTGAATCTGCCGATGTTCCACGGGGTAAGAAACTCC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013M05+           GGAATTGCTCCAAGTTATGCGGCTGCGGTGGCCGCCGGCGGGGAAGAAATGCATGGACGA
rJMSF037E14+          GGAATTGCTCCAAGTTATGCGGCNGCGGTGGCCGCCGGCGGGGAAGAAATGCATGGACGA
                      ____________________________________________________________
consensus             GGAATTGCTCCAAGTTATGCGGCTGCGGTGGCCGCCGGCGGGGAAGAAATGCATGGACGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013M05+           CCAATTCTTGAAAGAAAAGTGGTTCGAAACTCCCAAGCATGACTAAGAGATTTAAAAGAA
rJMSF037E14+          CCAATTCTTGAAAGAAAAGTGGTTCGAAACTCCCAAGCATGACTAAGAGATTTAAAAGAA
                      ____________________________________________________________
consensus             CCAATTCTTGAAAGAAAAGTGGTTCGAAACTCCCAAGCATGACTAAGAGATTTAAAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013M05+           TCTTTGGTCTGTTGATCAATCTTAGTTCTGAAAAATAATAATATATAAGATTGCTAACCA
rJMSF037E14+          TCTTTGGTCTGTTGATCAATCTTAGTTCTGAAAAATAATAATATATAAGATTGCTAACCA
                      ____________________________________________________________
consensus             TCTTTGGTCTGTTGATCAATCTTAGTTCTGAAAAATAATAATATATAAGATTGCTAACCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMSF013M05+           T                                                           
rJMSF037E14+          TGTAGAAACAAAATAAAGAGTGGTAGATGGTATAAATGGACTATTGAATCAGTGTAATTT
                      ____________________________________________________________
consensus             TGTAGAAACAAAATAAAGAGTGGTAGATGGTATAAATGGACTATTGAATCAGTGTAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037E14+          ATCCATTCACTATTCTGTCTGTTATAGTGTGAAGATCCTGGAATGGTCTATATTGTAAGT
                      ____________________________________________________________
consensus             ATCCATTCACTATTCTGTCTGTTATAGTGTGAAGATCCTGGAATGGTCTATATTGTAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF037E14+          GAAAGAAACGTTGGGTTAAAGATGGAATCTTTTCCTCTTTCTTATCACAAAGAATCTCTT
                      ____________________________________________________________
consensus             GAAAGAAACGTTGGGTTAAAGATGGAATCTTTTCCTCTTTCTTATCACAAAGAATCTCTT