Contig 004324:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF005B01Sequence270004324 (3)gb|KHG11373.1|4e-49Lycopene epsilon cyclase, chloroplastic -like protein [Gossypium arboreum]
JMSF016D20Sequence479006465 (3)ref|XP_009779493.1|2e-10PREDICTED: lycopene epsilon cyclase, chloroplastic [Nicotiana sylvestris]820004324 (3)emb|CBI27881.3|4e-119unnamed protein product [Vitis vinifera]
JMSF037A16Sequence690006465 (3)gb|ADK74376.1|2e-54lycopene epsilon cyclase [Camellia sinensis var. assamica]719004324 (3)emb|CBI27881.3|2e-117unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF016D20+                                                       GGAAACCATCCATAT
                      ____________________________________________________________
consensus                                                          GGAAACCATCCATAT
 
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rJMSF016D20+          GACCCCAGCCTGATGGTTTTCATGGATTACAGAGACTATGTCAGACACAAAGNTCACTCT
                      ____________________________________________________________
consensus             GACCCCAGCCTGATGGTTTTCATGGATTACAGAGACTATGTCAGACACAAAGNTCACTCT
 
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rJMSF016D20+          TTAGAAGCAGAATTTCCAACCTTTCTTTACGCAATGCCCATGTCTGATACAAGAGTCTTT
                      ____________________________________________________________
consensus             TTAGAAGCAGAATTTCCAACCTTTCTTTACGCAATGCCCATGTCTGATACAAGAGTCTTT
 
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JMSF005B01-               AGAAGCTATGCCTTTTGATCTCTTGAAGAACAAACTAATGTTAAGACTGGAGACAA
rJMSF016D20+          TTTGAGAAGCTATGCCTTTTGATCTCTTGAAGAACAAACTAATGTTAAGACTGGAGACAA
rJMSF037A16+              AGAAGCTATGCCTTTTGATCTCTTGAAGAACAAACTAATGTTAAGACTGGAGACAA
                      ____________________________________________________________
consensus             TTTGAGAAGCTATGCCTTTTGATCTCTTGAAGAACAAACTAATGTTAAGACTGGAGACAA
 
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JMSF005B01-           TGGGTATCCGAATAAAGAAAATTTATGAAGAGGAATGGTCTTATATACCAGTTGGTGGAT
rJMSF016D20+          TGGGTATCCGAATAAAGAAAATTTATGAAGAGGAATGGTCTTATATACCAGTTGGTGGAT
rJMSF037A16+          TGGGTATCCGAATAAAGAAAATTTATGAAGAGGAATGGTCTTATATACCAGTTGGTGGAT
                      ____________________________________________________________
consensus             TGGGTATCCGAATAAAGAAAATTTATGAAGAGGAATGGTCTTATATACCAGTTGGTGGAT
 
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JMSF005B01-           CCTTGCCAAATACTGATCAAAGAAACCTTGCATTTGGTGCTGCTGCTAGTATGGTTCATC
rJMSF016D20+          CCTTGCCAAATACTGATCAAAGAAACCTTGCATTTGGTGCTGCTGCTAGTATGGTTCATC
rJMSF037A16+          CCTTGCCAAATACTGATCAAAGAAACCTTGCATTTGGTGCTGCTGCTAGTATGGTTCATC
                      ____________________________________________________________
consensus             CCTTGCCAAATACTGATCAAAGAAACCTTGCATTTGGTGCTGCTGCTAGTATGGTTCATC
 
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JMSF005B01-           CCGCTACAGGGTATTCGGTGGTAAGATCATTGTCAGAG                      
rJMSF016D20+          CCGCTACAGGGTATTCGGTGGTAAGATCATTGTCAGAGGCTCCAAGATATGCATCTGTCA
rJMSF037A16+          CCGCTACAGGGTATTCGGTGGTAAGATCATTGTCAGAGGCTCCAAGATATGCATCTGTCA
                      ____________________________________________________________
consensus             CCGCTACAGGGTATTCGGTGGTAAGATCATTGTCAGAGGCTCCAAGATATGCATCTGTCA
 
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rJMSF016D20+          TAGCAAATATTTTGAAACGAAGTCCTGCTATGGATGATATGCTTGTCAGTTTAAGAAGTA
rJMSF037A16+          TAGCAAATATTTTGAAACGAAGTCCTGCTATGGATGATATGCTTGTCAGTTTAAGAAGTA
                      ____________________________________________________________
consensus             TAGCAAATATTTTGAAACGAAGTCCTGCTATGGATGATATGCTTGTCAGTTTAAGAAGTA
 
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rJMSF016D20+          CGGAAAATATTTCAACACAAGCTTGGGAAACGCTTTGGCCGCAAGAAAGGAAACGACAAA
rJMSF037A16+          CGGAAAATATTTCAACACAAGCTTGGGAAACGCTTTGGCCGCAAGAAAGGAAACGACAAA
                      ____________________________________________________________
consensus             CGGAAAATATTTCAACACAAGCTTGGGAAACGCTTTGGCCGCAAGAAAGGAAACGACAAA
 
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rJMSF016D20+          GATCATTTTTCCTATTTGGTTTGGCACTTATATTGCAGCTTGATATTGAAGGAATACGAA
rJMSF037A16+          GATCATTTTTCCTATTTGGTTTGGCACTTATANTGCAGCTTGATATTGAAGGAATNCGAA
                      ____________________________________________________________
consensus             GATCATTTTTCCTATTTGGTTTGGCACTTATATTGCAGCTTGATATTGAAGGAATACGAA
 
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rJMSF016D20+          CATTTTTCCACACATTCTTCCGCTTACCAAACTGGATGTGGCAAGGATTTCTGGGATCAA
rJMSF037A16+          CATTTTTCCACACATTCTTCCGCTTACCAAACTGGATGTGGCAAGGATTTCTGGGATCAA
                      ____________________________________________________________
consensus             CATTTTTCCACACATTCTTCCGCTTACCAAACTGGATGTGGCAAGGATTTCTGGGATCAA
 
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rJMSF016D20+          CTCTATCCTCAGCGGACCTCATGTTATTTGCATTTTATATGTTTGTTATTGCCCCCAACG
rJMSF037A16+          CTCTATCCTCAGCGGACCTCATGTTATTTGCATTTTATATGTTTGTTATTGCCCCCAACG
                      ____________________________________________________________
consensus             CTCTATCCTCAGCGGACCTCATGTTATTTGCATTTTATATGTTTGTTATTGCCCCCAACG
 
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rJMSF016D20+          ACATGAGAAAATGCCTCATCAGACATCTGATATCTGACCCAACTGGTGCAATCATGATAA
rJMSF037A16+          ACATGAGAAAATGCCTCATCAGACATNTGATATNTGACCCAACTGGTGCAATCATGATAA
                      ____________________________________________________________
consensus             ACATGAGAAAATGCCTCATCAGACATCTGATATCTGACCCAACTGGTGCAATCATGATAA
 
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rJMSF016D20+          GAACTTATCTCACTCTGTAAATCCATATTTCTAGTCGATGTTATATTATAGAATAGATAT
rJMSF037A16+          GAACTTATCTCACTCTGTAAATCCATATTTCTAGTCGATGTTATATTATAGAATAGATAT
                      ____________________________________________________________
consensus             GAACTTATCTCACTCTGTAAATCCATATTTCTAGTCGATGTTATATTATAGAATAGATAT
 
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rJMSF016D20+          ATAGAAACCATGTGTAGAGGCCATG                                   
rJMSF037A16+          ATAGAAACCATGTGTAGAGGCCATGTATCCACTTCAGAGGTTTCCAATTCTANAGAATTT
                      ____________________________________________________________
consensus             ATAGAAACCATGTGTAGAGGCCATGTATCCACTTCAGAGGTTTCCAATTCTANAGAATTT