Contig 004316:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021P11Sequence490013455 (3)ref|XP_009794349.1|137PREDICTED: uncharacterized protein LOC104241132 [Nicotiana sylvestris] ref|XP_00570004316 (3)ref|XP_002532901.1|5e-04hypothetical protein RCOM_0169140 [Ricinus communis] gb|EEF29481.1| hypothetical
JMFF040C23Sequence600013455 (3)ref|XP_009794349.1|141PREDICTED: uncharacterized protein LOC104241132 [Nicotiana sylvestris] ref|XP_00358004316 (3)
JMSF035D16Sequence676013455 (3)737004316 (3)ref|XP_009794349.1|86.3PREDICTED: uncharacterized protein LOC104241132 [Nicotiana sylvestris] ref|XP_00

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF035D16+ GGGGATNCAACNCCATNGA
                      ____________________________________________________________
consensus GGGGATNCAACNCCATNGA
 
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rJMSF035D16+ AACGCCCCCGAAGAGGNCAGGCGAGAAGGGGTAGGCAGAGGAAAGACTTCCAACGGGATG
                      ____________________________________________________________
consensus AACGCCCCCGAAGAGGNCAGGCGAGAAGGGGTAGGCAGAGGAAAGACTTCCAACGGGATG
 
. : . : . : . : . : . :
rJMFF021P11+ GAGGATATCCTGACATTNG
rJMSF035D16+ TCCTGCCGGGAATCATGTCCCTTTNTAAGCACGAGNTAAGCGAGGATATCCTGACATTCG
                      ____________________________________________________________
consensus TCCTGCCGGGAATCATGTCCCTTTNTAAGCACGAGNTAAGCGAGGATATCCTGACATTCG
 
. : . : . : . : . : . :
rJMFF021P11+ AGGAGCTGTTGAGAACCTNGGGNTTGCTCTTGGGCAGTNGTGTTTGCCACAGAAGAAGGC
rJMSF035D16+ AGGAGCTGTTGAGAACCTCGGG-TTGCTCTT-GGCAGTCGTGTTTGCCACAGAAGAAGGC
                      ____________________________________________________________
consensus AGGAGCTGTTGAGAACCTCGGGNTTGCTCTTGGGCAGTCGTGTTTGCCACAGAAGAAGGC
 
. : . : . : . : . : . :
rJMFF021P11+ CNCCNCCAAGAGTTGTAGGGGAAGGAGGCGGCGTGGAGGCGGCTCAACTCCCTCCCCCAT
rJMSF035D16+ CACCGCCAAGAGTTGTAGGGGAAGGAGGCGGCGTGGAGGCGGCTCAACTCCCTCCCCCAT
                      ____________________________________________________________
consensus CACCGCCAAGAGTTGTAGGGGAAGGAGGCGGCGTGGAGGCGGCTCAACTCCCTCCCCCAT
 
. : . : . : . : . : . :
rJMFF021P11+ TATAACCGCCACCACTCCACCAAACCAACCTCTCGGCAACAAAGTCGAGGTCGAGAAGGC
rJMFF040C23+ CGGCAACAAAGTCGAGGTCGAGAAGGC
rJMSF035D16+ TATAACCGCCACCACTCCACCAAACCAACCTCTCGGCAACAAAGTCGAGGTCGAGAAGGC
                      ____________________________________________________________
consensus TATAACCGCCACCACTCCACCAAACCAACCTCTCGGCAACAAAGTCGAGGTCGAGAAGGC
 
. : . : . : . : . : . :
rJMFF021P11+ CACCAGCCTAACGGGATGGGGAAAGAGGACACGACGCCTGCCAAGGCAGCGGTGTCCAAC
rJMFF040C23+ CACCAGCCTAACGGGATGGGGAAAGAGGACACGACGCCTGCCAAGGCAGCGGTGTCCAAC
rJMSF035D16+ CACCAGCCTAACGGGATGGGGAAAGAGGACACGACGCCTGCCAAGGCAGCGGTGTCCAAC
                      ____________________________________________________________
consensus CACCAGCCTAACGGGATGGGGAAAGAGGACACGACGCCTGCCAAGGCAGCGGTGTCCAAC
 
. : . : . : . : . : . :
rJMFF021P11+ TACACATCATGTTCCTCTGATGCAATGCGAACGGGGATTAATCTGAGTATGGTACGGGCT
rJMFF040C23+ TACACATCATGTTCCTCTGATGCAATGCGAACGGGGATTAATCTGAGTATGGTACGGGCT
rJMSF035D16+ TACACATCATGTTCCTCTGATGCAATGCGAACGGGGATTAATCTGAGTATGGTACGGGCT
                      ____________________________________________________________
consensus TACACATCATGTTCCTCTGATGCAATGCGAACGGGGATTAATCTGAGTATGGTACGGGCT
 
. : . : . : . : . : . :
rJMFF021P11+ TAAAGGTGGTCTCCTATTAGGGCCTGCTCGGGACACCTGACCAAAAAAAATGCTAACATG
rJMFF040C23+ TAAAGGTGGTCTCCTATTAGGGCCTGCTCGGGACACCTGACCAAAAAAAATGCTAACATG
rJMSF035D16+ TAAAGGTGGTCTCCTATTAGGGCCTGCTCGGGACACCTGACCAAAAAAAATGCTAACATG
                      ____________________________________________________________
consensus TAAAGGTGGTCTCCTATTAGGGCCTGCTCGGGACACCTGACCAAAAAAAATGCTAACATG
 
. : . : . : . : . : . :
rJMFF021P11+ GTTCCTAAATTTCCTCAAAACATGTACTAGGAACAAGAGGCTGCATAACATTCTTGAAAG
rJMFF040C23+ GTTCNTAAATTTCCTCAAAACATGTACTAGGAACAAGAGGCTGCATAACNTTCTTGAAAG
rJMSF035D16+ GTTCCTAAATTTCCTCAAAACATGTACTAGGAACAAGAGGCTGCATAACATTCTTGAAAG
                      ____________________________________________________________
consensus GTTCCTAAATTTCCTCAAAACATGTACTAGGAACAAGAGGCTGCATAACATTCTTGAAAG
 
. : . : . : . : . : . :
rJMFF021P11+ TAATAAGGTTGCAACAAACACTGTCAACTTACACCACCAGAAAAGGATGGCCTTTGTATC
rJMFF040C23+ TAATAAGGTTGCAACAAACACTGTCAACTTACACCACCAGAAAAGGATGGCCTTTGTATC
rJMSF035D16+ TAATAAGGTTGCAACAAACACTGTCAACTTACACCACCAGAAAAGGATGGCCTTTGTATC
                      ____________________________________________________________
consensus TAATAAGGTTGCAACAAACACTGTCAACTTACACCACCAGAAAAGGATGGCCTTTGTATC
 
. : . : . : . : . : . :
rJMFF021P11+ AGACCTCCCATTATTTATTCAGATCCGATCTTGATCAGACTGGGTTTGTGGCGGCTTATA
rJMFF040C23+ AGACCTCCCATTATTTATTCAGATCCGATCT
rJMSF035D16+ AGACCTCCCATTATTTATTCAGATCCGATCTTGATCAGACTGGGTTTGTGGCGGCTTATA
                      ____________________________________________________________
consensus AGACCTCCCATTATTTATTCAGATCCGATCTTGATCAGACTGGGTTTGTGGCGGCTTATA
 
. : . : . : . : . : . :
rJMFF021P11+ GAGCTATAA
rJMSF035D16+ GAGCTATAATGTCCATGTATTTCTTATATCATCTTTGTCTTATATTTGAGCTTATTAACA
                      ____________________________________________________________
consensus GAGCTATAATGTCCATGTATTTCTTATATCATCTTTGTCTTATATTTGAGCTTATTAACA