Contig 004316:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF035D16+                                                   GGGGATNCAACNCCATNGA
                      ____________________________________________________________
consensus                                                      GGGGATNCAACNCCATNGA
 
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rJMSF035D16+          AACGCCCCCGAAGAGGNCAGGCGAGAAGGGGTAGGCAGAGGAAAGACTTCCAACGGGATG
                      ____________________________________________________________
consensus             AACGCCCCCGAAGAGGNCAGGCGAGAAGGGGTAGGCAGAGGAAAGACTTCCAACGGGATG
 
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rJMFF021P11+                                                   GAGGATATCCTGACATTNG
rJMSF035D16+          TCCTGCCGGGAATCATGTCCCTTTNTAAGCACGAGNTAAGCGAGGATATCCTGACATTCG
                      ____________________________________________________________
consensus             TCCTGCCGGGAATCATGTCCCTTTNTAAGCACGAGNTAAGCGAGGATATCCTGACATTCG
 
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rJMFF021P11+          AGGAGCTGTTGAGAACCTNGGGNTTGCTCTTGGGCAGTNGTGTTTGCCACAGAAGAAGGC
rJMSF035D16+          AGGAGCTGTTGAGAACCTCGGG-TTGCTCTT-GGCAGTCGTGTTTGCCACAGAAGAAGGC
                      ____________________________________________________________
consensus             AGGAGCTGTTGAGAACCTCGGGNTTGCTCTTGGGCAGTCGTGTTTGCCACAGAAGAAGGC
 
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rJMFF021P11+          CNCCNCCAAGAGTTGTAGGGGAAGGAGGCGGCGTGGAGGCGGCTCAACTCCCTCCCCCAT
rJMSF035D16+          CACCGCCAAGAGTTGTAGGGGAAGGAGGCGGCGTGGAGGCGGCTCAACTCCCTCCCCCAT
                      ____________________________________________________________
consensus             CACCGCCAAGAGTTGTAGGGGAAGGAGGCGGCGTGGAGGCGGCTCAACTCCCTCCCCCAT
 
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rJMFF021P11+          TATAACCGCCACCACTCCACCAAACCAACCTCTCGGCAACAAAGTCGAGGTCGAGAAGGC
rJMFF040C23+                                           CGGCAACAAAGTCGAGGTCGAGAAGGC
rJMSF035D16+          TATAACCGCCACCACTCCACCAAACCAACCTCTCGGCAACAAAGTCGAGGTCGAGAAGGC
                      ____________________________________________________________
consensus             TATAACCGCCACCACTCCACCAAACCAACCTCTCGGCAACAAAGTCGAGGTCGAGAAGGC
 
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rJMFF021P11+          CACCAGCCTAACGGGATGGGGAAAGAGGACACGACGCCTGCCAAGGCAGCGGTGTCCAAC
rJMFF040C23+          CACCAGCCTAACGGGATGGGGAAAGAGGACACGACGCCTGCCAAGGCAGCGGTGTCCAAC
rJMSF035D16+          CACCAGCCTAACGGGATGGGGAAAGAGGACACGACGCCTGCCAAGGCAGCGGTGTCCAAC
                      ____________________________________________________________
consensus             CACCAGCCTAACGGGATGGGGAAAGAGGACACGACGCCTGCCAAGGCAGCGGTGTCCAAC
 
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rJMFF021P11+          TACACATCATGTTCCTCTGATGCAATGCGAACGGGGATTAATCTGAGTATGGTACGGGCT
rJMFF040C23+          TACACATCATGTTCCTCTGATGCAATGCGAACGGGGATTAATCTGAGTATGGTACGGGCT
rJMSF035D16+          TACACATCATGTTCCTCTGATGCAATGCGAACGGGGATTAATCTGAGTATGGTACGGGCT
                      ____________________________________________________________
consensus             TACACATCATGTTCCTCTGATGCAATGCGAACGGGGATTAATCTGAGTATGGTACGGGCT
 
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rJMFF021P11+          TAAAGGTGGTCTCCTATTAGGGCCTGCTCGGGACACCTGACCAAAAAAAATGCTAACATG
rJMFF040C23+          TAAAGGTGGTCTCCTATTAGGGCCTGCTCGGGACACCTGACCAAAAAAAATGCTAACATG
rJMSF035D16+          TAAAGGTGGTCTCCTATTAGGGCCTGCTCGGGACACCTGACCAAAAAAAATGCTAACATG
                      ____________________________________________________________
consensus             TAAAGGTGGTCTCCTATTAGGGCCTGCTCGGGACACCTGACCAAAAAAAATGCTAACATG
 
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rJMFF021P11+          GTTCCTAAATTTCCTCAAAACATGTACTAGGAACAAGAGGCTGCATAACATTCTTGAAAG
rJMFF040C23+          GTTCNTAAATTTCCTCAAAACATGTACTAGGAACAAGAGGCTGCATAACNTTCTTGAAAG
rJMSF035D16+          GTTCCTAAATTTCCTCAAAACATGTACTAGGAACAAGAGGCTGCATAACATTCTTGAAAG
                      ____________________________________________________________
consensus             GTTCCTAAATTTCCTCAAAACATGTACTAGGAACAAGAGGCTGCATAACATTCTTGAAAG
 
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rJMFF021P11+          TAATAAGGTTGCAACAAACACTGTCAACTTACACCACCAGAAAAGGATGGCCTTTGTATC
rJMFF040C23+          TAATAAGGTTGCAACAAACACTGTCAACTTACACCACCAGAAAAGGATGGCCTTTGTATC
rJMSF035D16+          TAATAAGGTTGCAACAAACACTGTCAACTTACACCACCAGAAAAGGATGGCCTTTGTATC
                      ____________________________________________________________
consensus             TAATAAGGTTGCAACAAACACTGTCAACTTACACCACCAGAAAAGGATGGCCTTTGTATC
 
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rJMFF021P11+          AGACCTCCCATTATTTATTCAGATCCGATCTTGATCAGACTGGGTTTGTGGCGGCTTATA
rJMFF040C23+          AGACCTCCCATTATTTATTCAGATCCGATCT                             
rJMSF035D16+          AGACCTCCCATTATTTATTCAGATCCGATCTTGATCAGACTGGGTTTGTGGCGGCTTATA
                      ____________________________________________________________
consensus             AGACCTCCCATTATTTATTCAGATCCGATCTTGATCAGACTGGGTTTGTGGCGGCTTATA
 
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rJMFF021P11+          GAGCTATAA                                                   
rJMSF035D16+          GAGCTATAATGTCCATGTATTTCTTATATCATCTTTGTCTTATATTTGAGCTTATTAACA
                      ____________________________________________________________
consensus             GAGCTATAATGTCCATGTATTTCTTATATCATCTTTGTCTTATATTTGAGCTTATTAACA