Contig 004314:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF033L04Sequence674024225ref|XP_006344474.1|3e-49PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic741004314 (2)ref|XP_011071956.1|2e-69PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic
JMSF034L04Sequence722004314 (2)ref|XP_006344474.1|1e-62PREDICTED: pentatricopeptide repeat-containing protein At3g48250, chloroplastic

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033L04+                                                ATGTGGACNGTGATCTATTGGA
                      ____________________________________________________________
consensus                                                   ATGTGGACNGTGATCTATTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033L04+          TGTATTGATAAATGGTTTTGTGAGTCAGAGAAAAGTAGTCGGTGCTTATGAATTGCTAAA
rJMSF034L04+                       GGTTTTGTGAGTCAGAGAAAAGTAGTCGGTGCTTATGAATTGCTAAA
                      ____________________________________________________________
consensus             TGTATTGATAAATGGTTTTGTGAGTCAGAGAAAAGTAGTCGGTGCTTATGAATTGCTAAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033L04+          AGAGATGGTGAAGCAGGCTCAGTTGCGACCATGGCAAGCAACATATAAGAACCTGATCGA
rJMSF034L04+          AGAGATGGTGAAGCAGGCTCAGTTGCGACCATGGCAAGCAACATATAAGAACCTGATCGA
                      ____________________________________________________________
consensus             AGAGATGGTGAAGCAGGCTCAGTTGCGACCATGGCAAGCAACATATAAGAACCTGATCGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033L04+          AAAGCTGTTGGGGGAAATGAAAATGGATGAAGCATTGGATCTACTTGGTATGATGAAGAA
rJMSF034L04+          AAAGCTGTTGGGGGAAATGAAAATGGATGAAGCATTGGATCTACTTGGTATGATGAAGAA
                      ____________________________________________________________
consensus             AAAGCTGTTGGGGGAAATGAAAATGGATGAAGCATTGGATCTACTTGGTATGATGAAGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033L04+          GCAGAATTATCCACCTTTTGCAGAACCTTTTTATCGGTATATTTCAAAGCTGGGGACAGT
rJMSF034L04+          GCAGAATTATCCACCTTTTGCAGAACCTTTTTATCGGTATATTTCAAAGCTGGGGACAGT
                      ____________________________________________________________
consensus             GCAGAATTATCCACCTTTTGCAGAACCTTTTTATCGGTATATTTCAAAGCTGGGGACAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033L04+          GGAGGATGCAATGGAATTTCTCAAGGCATTGAGTAAGGGATATCCATCTGTTGCAGCTTA
rJMSF034L04+          GGAGGATGCAATGGAATTTCTCAAGGCATTGAGTAAGGGATATCCATCTGTTGCAGCTTA
                      ____________________________________________________________
consensus             GGAGGATGCAATGGAATTTCTCAAGGCATTGAGTAAGGGATATCCATCTGTTGCAGCTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033L04+          CCATCATGTTTTGGAATCCTTCTTTGAAGAGGGTAGACACTCCGAGGCAAAGGATCTTCT
rJMSF034L04+          CCATCATGTTTTGGAATCCTTCTTTGAAGAGGGTAGACACTCCGAGGCAAAGGATCTTCT
                      ____________________________________________________________
consensus             CCATCATGTTTTGGAATCCTTCTTTGAAGAGGGTAGACACTCCGAGGCAAAGGATCTTCT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033L04+          TTACAAGTGCCCTCACCATATTCGTAAACATCCTAAAATTTGCAGCCTTTTTGGTTCTGC
rJMSF034L04+          TTACAAGTGCCCTCACCATATTCGTAAACATCCTAAAATTTGCAGCCTTTTTGGTTCTGC
                      ____________________________________________________________
consensus             TTACAAGTGCCCTCACCATATTCGTAAACATCCTAAAATTTGCAGCCTTTTTGGTTCTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033L04+          AAAGATCACCAGTTGAAGTGTGCTTGTGACTATTCCCTCAGGTCAAGACAAGAAACTGAA
rJMSF034L04+          AAAGATCACCAGTTGAAGTGTGCTTGTGACTATTCCCTCAGGTCAAGACAAGAAACTGAA
                      ____________________________________________________________
consensus             AAAGATCACCAGTTGAAGTGTGCTTGTGACTATTCCCTCAGGTCAAGACAAGAAACTGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033L04+          AATTAGGTTCACGGATGAGATTGGTGCATGAGAACACTCTGATTCATGATGGGGGCGAAG
rJMSF034L04+          AATTAGGTTCACGGATGAGATTGGTGCATGAGAACACTCTGATTCATGATGGGGGCGAAG
                      ____________________________________________________________
consensus             AATTAGGTTCACGGATGAGATTGGTGCATGAGAACACTCTGATTCATGATGGGGGCGAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033L04+          CTGTACGAGGTAAAGGCGTAAAGCTGCCAGAGAAGTATTTCATGACACGACTCGTTTGGT
rJMSF034L04+          CTGTACGAGGTAAAGGCGTAAAGCTGCCAGAGAAGTATTTCATGACACGACTCGTTTGGT
                      ____________________________________________________________
consensus             CTGTACGAGGTAAAGGCGTAAAGCTGCCAGAGAAGTATTTCATGACACGACTCGTTTGGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033L04+          ATGTAGGTTCATTGAAAAGCTTTGATGAAGTTTTGGAAACTGCAAATTGGTTTTCATCTT
rJMSF034L04+          ATGTAGGTTCATTGAAAAGCTTTGATGAAGTTTTGGAAACTGCAAATTGGTTTTCATCTT
                      ____________________________________________________________
consensus             ATGTAGGTTCATTGAAAAGCTTTGATGAAGTTTTGGAAACTGCAAATTGGTTTTCATCTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF033L04+          TGGTTTAGCTTTTTACTAGAGATGATGTACAAGGAAGGCATAGCAAGCTTT         
rJMSF034L04+          TGGTTTAGCTTTTTACTAGAGATGATGTACAAGGAAGGCATAGCAAGCTTTAGCATCCTT
                      ____________________________________________________________
consensus             TGGTTTAGCTTTTTACTAGAGATGATGTACAAGGAAGGCATAGCAAGCTTTAGCATCCTT