Contig 004309:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019M02Sequence257012061 (3)gb|EPS60166.1|4e-15hypothetical protein M569_14639, partial [Genlisea aurea]736004309 (2)ref|XP_006349667.1|2e-94PREDICTED: mitochondrial Rho GTPase 1-like [Solanum tuberosum]
JMSF033B13Sequence679012061 (3)ref|XP_004247162.1|1e-98PREDICTED: mitochondrial Rho GTPase 1 [Solanum lycopersicum]727004309 (2)ref|XP_006349667.1|5e-88PREDICTED: mitochondrial Rho GTPase 1-like [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF019M02+                                       TGAAGTCATTTTTGGGAAGGCCCTTCACTGA
rJMSF033B13+                                                               TCACTGA
                      ____________________________________________________________
consensus                                          TGAAGTCATTTTTGGGAAGGCCCTTCACTGA
 
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rJMSF019M02+          TGATTATGTACCTACGAGTGAAGAGCGGTATGTTGTCAACGCTGTTGACTGTCCTGGGGG
rJMSF033B13+          TGATTATGTACCTGCGAGTGAAGAGCGGTATGTTGTCAATGCTGTTGACTGTCCTGGGGG
                      ____________________________________________________________
consensus             TGATTATGTACCTGCGAGTGAAGAGCGGTATGTTGTCAATGCTGTTGACTGTCCTGGGGG
 
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rJMSF019M02+          TATTAAGAAAACGCTTGTCCTTCGGGAGATTCCAGAAGATGGAATCAAAAAATTATTATC
rJMSF033B13+          TATTAAGAAAACGCTTGTCCTTCGGGAGATTCCAGAAGATGGAATAAAAAAATTATTATA
                      ____________________________________________________________
consensus             TATTAAGAAAACGCTTGTCCTTCGGGAGATTCCAGAAGATGGAATCAAAAAATTATTATC
 
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rJMSF019M02+          TACTAAGGAGTCTTTGGCAAGTTGTGACATAGCAGTGTTTGTATATGACAGCTCAGATGA
rJMSF033B13+          TACTAAGGAGTCTTTGGCAAGTTGTGACATAGCAGTGTTTGTATATGACAGCTCAGATGA
                      ____________________________________________________________
consensus             TACTAAGGAGTCTTTGGCAAGTTGTGACATAGCAGTGTTTGTATATGACAGCTCAGATGA
 
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rJMSF019M02+          ATATTCTCTAAAAAGAACTTCAGAATTGCTAATGGACGTAGCAAGGCAAGGGGAAGTTAC
rJMSF033B13+          ATATTCTCTAAAAAGAAATTCAGAATTGCTCATGGATGTAGCAAGGCAAGGGGAAGTTAC
                      ____________________________________________________________
consensus             ATATTCTCTAAAAAGAACTTCAGAATTGCTCATGGATGTAGCAAGGCAAGGGGAAGTTAC
 
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rJMSF019M02+          TGGTTTAAGTGTGCCTTGTCTGTTTATTGCTGCAAAGGATGATTTAGATACATATCCAAT
rJMSF033B13+          CGGTTTAAGTGTGCCGTGTCTGTTTATTGCTGCTAAGGATGATTTAGATTCATATCCGAT
                      ____________________________________________________________
consensus             TGGTTTAAGTGTGCCTTGTCTGTTTATTGCTGCTAAGGATGATTTAGATTCATATCCGAT
 
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rJMSF019M02+          GGCAATAAAAGATTCTACAAAGATATTCCAGTATTTTGGGATTGATTCACCTATTCACAT
rJMSF033B13+          GGCAATAAAAGATTCTACAAAGATATGCCAGTATTTTGGGATTGATTCACCTATTCACAT
                      ____________________________________________________________
consensus             GGCAATAAAAGATTCTACAAAGATATTCCAGTATTTTGGGATTGATTCACCTATTCACAT
 
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rJMSF019M02+          TAGTGTGAAGGAGAGGGATCTGAACAGTGTGTTCAGTCGAATTGTGAATGCCGCCGAACA
rJMSF033B13+          TAGTGTGAAGGAGAGGGATCTGAACAGTGTGTTCAGTCGAATTGTGAATGCAGCCGAACA
                      ____________________________________________________________
consensus             TAGTGTGAAGGAGAGGGATCTGAACAGTGTGTTCAGTCGAATTGTGAATGCCGCCGAACA
 
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rJMSF019M02+          CCCTCATTTGAGCGTCCCCGAAACTGAAGTTGGTCGCAACCAGAAGCGGTATCGCCAGCT
rJMSF033B13+          CCCTCATTTGAGCGTCCCCGAAACTGAAGTTGGTCGCAAGCAGAAGCGGTATCACCAGCT
                      ____________________________________________________________
consensus             CCCTCATTTGAGCGTCCCCGAAACTGAAGTTGGTCGCAAGCAGAAGCGGTATCGCCAGCT
 
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rJMSF019M02+          TATCAATCGCTCTCTGATGGTCGCCTCAGTTGCGGCTGCTATAGGTGTAGTTGGAATGGC
rJMSF033B13+          TATTAATCGCTCTCTGATGGTTGCCTCAGTTGCGGCTGCTATAGGTATAGTTGGAATGGC
                      ____________________________________________________________
consensus             TATTAATCGCTCTCTGATGGTTGCCTCAGTTGCGGCTGCTATAGGTGTAGTTGGAATGGC
 
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rJMSF019M02+          CGCATATCGCTCTTACATTGCAAGAAAGAACACCTCCGGTTAGG                
rJMSF033B13+          CACATATCGCTCTTACATTGCAAGGAAGAACACCTCCGGTTAGGGTTAAATTTCATTGAG
                      ____________________________________________________________
consensus             CGCATATCGCTCTTACATTGCAAGGAAGAACACCTCCGGTTAGGGTTAAATTTCATTGAG
 
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rJMSF033B13+          ATTGCATCTTTTGGAAGCTGGGCCTAGCTGGTTGCCCAGACGTGGCGGTAACATCCATTT
                      ____________________________________________________________
consensus             ATTGCATCTTTTGGAAGCTGGGCCTAGCTGGTTGCCCAGACGTGGCGGTAACATCCATTT
 
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rJMSF033B13+          TGTTTCGGGTTTTATTTTTGCTTCCGCATTTGAACTCTATTTTAAAGTAAATAAATGACT
                      ____________________________________________________________
consensus             TGTTTCGGGTTTTATTTTTGCTTCCGCATTTGAACTCTATTTTAAAGTAAATAAATGACT