Contig 004308:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF006O04Sequence300003752 (2)ref|XP_009775271.1|2e-33PREDICTED: E2F transcription factor-like E2FE isoform X2 [Nicotiana sylvestris]388004308 (2)ref|XP_006345002.1|2e-27PREDICTED: E2F transcription factor-like E2FE-like isoform X2 [Solanum tuberosu
JMSF032N07Sequence631003752 (2)ref|XP_009775271.1|1e-53PREDICTED: E2F transcription factor-like E2FE isoform X2 [Nicotiana sylvestris]757004308 (2)ref|XP_009607525.1|2e-90PREDICTED: E2F transcription factor-like E2FE [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032N07+                               TGATGAAGCTGCAAAGATATTACTGGGAGATGGAAGACC
                      ____________________________________________________________
consensus                                  TGATGAAGCTGCAAAGATATTACTGGGAGATGGAAGACC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032N07+          TCCATCAATAAATAGAACTAAAGTTAGAAGATTGTATGATATTGCTAATGTTCTGTCTTC
                      ____________________________________________________________
consensus             TCCATCAATAAATAGAACTAAAGTTAGAAGATTGTATGATATTGCTAATGTTCTGTCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032N07+          AATGAAATTCATTGAGAAGACTCATCACCCTGCAACAAGAAAACCCGCATTTAGATGGTT
                      ____________________________________________________________
consensus             AATGAAATTCATTGAGAAGACTCATCACCCTGCAACAAGAAAACCCGCATTTAGATGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032N07+          GGGGTTGAAAGGAAAATCAGAAAACCAAGCAGCAAATGCATCAGAGGACAATCTGGGTTG
                      ____________________________________________________________
consensus             GGGGTTGAAAGGAAAATCAGAAAACCAAGCAGCAAATGCATCAGAGGACAATCTGGGTTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032N07+          CAACCAGTCCAGGAAGAGGGTATTCGGAACTGAGCTCACAAATACAACTACAAAGAGATA
                      ____________________________________________________________
consensus             CAACCAGTCCAGGAAGAGGGTATTCGGAACTGAGCTCACAAATACAACTACAAAGAGATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF032N07+          CAAATTGGATAAACCAACGGATGCGTTTGGCGAGTCAATGAAATCAAAACTAGCAGCACA
                      ____________________________________________________________
consensus             CAAATTGGATAAACCAACGGATGCGTTTGGCGAGTCAATGAAATCAAAACTAGCAGCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006O04+                          TTGGAAAATGAGTTTGACAGACCAAAGCAGGACCTTGGNTTCAA
rJMSF032N07+          AGTCAAATGTGAGAATTTGGAAAATGAGTTTGACAGACCAAAGCAGGACCTTGG-TTCAA
                      ____________________________________________________________
consensus             AGTCAAATGTGAGAATTTGGAAAATGAGTTTGACAGACCAAAGCAGGACCTTGGNTTCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006O04+          GAACCAANCAGAAAGAGTTATGAATTTGGCCCTTTCGCTCCTGTACCTGTGCCTAAATTT
rJMSF032N07+          GAA-CAAACAGAAAGAGTTATGAATTTGGCCCTTTCGCTCCTGTACCTGTGCCTAAATTT
                      ____________________________________________________________
consensus             GAACCAAACAGAAAGAGTTATGAATTTGGCCCTTTCGCTCCTGTACCTGTGCCTAAATTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006O04+          GAAGCTTCAGAGAGTGGTGAGAGAACAAAGGTGATTCGTGAATTGGAAAGCTTAGCATCA
rJMSF032N07+          GAAGCTTCAGAGAGTGGTGAGAGAACAAAGGTGATTCGTGAATTGGAAAGCTTAGCATCA
                      ____________________________________________________________
consensus             GAAGCTTCAGAGAGTGGTGAGAGAACAAAGGTGATTCGTGAATTGGAAAGCTTAGCATCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006O04+          ACCTATCACCCTCAGTATCACAACCAAGCATTAAGGGATCTCTTTTCACATTACATGGAA
rJMSF032N07+          ACCTATCACCCTCAGTATCACAACCAAGCATTAAGGGATCTCTTTTCACATTACATGGAA
                      ____________________________________________________________
consensus             ACCTATCACCCTCAGTATCACAACCAAGCATTAAGGGATCTCTTTTCACATTACATGGAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006O04+          GCATGGAAGTCTTGGTACTTGGAAATTGCTGGGAAGAAACCAATTCAAATGCTATCCTAA
rJMSF032N07+          GCATGGAAGTCTTGGTACTTGGAAATTGCTGGGAAGAAACCAATTCAAATGCTATCCTAA
                      ____________________________________________________________
consensus             GCATGGAAGTCTTGGTACTTGGAAATTGCTGGGAAGAAACCAATTCAAATGCTATCCTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006O04+          TGCTTACAACTTGTAACACATCTTCTAACACAGGAGGGGGATGATCTGGTGGGTTTTCTC
rJMSF032N07+          TGCTTACAACTTGTAACACATCTTCTAACACAGGAGGGGGATGATCTGGTGGGTTTTCTC
                      ____________________________________________________________
consensus             TGCTTACAACTTGTAACACATCTTCTAACACAGGAGGGGGATGATCTGGTGGGTTTTCTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF006O04+          TGTTCCTGTTAGATATACTAGTTTATGTCTGTAATTTATCGTTA                
rJMSF032N07+          TGTTCCTGTTAGATATACTAGTTTATGTCTGTAATTTATCGTTACTCTCCCTTGTCCATC
                      ____________________________________________________________
consensus             TGTTCCTGTTAGATATACTAGTTTATGTCTGTAATTTATCGTTACTCTCCCTTGTCCATC