Contig 004307:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017K01Sequence417006474 (5)ref|XP_009794054.1|3e-10PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like isoform X2 [Nicotiana syl181004307 (3)
JMSF032M18Sequence663006474 (5)ref|XP_009794054.1|5e-69PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like isoform X2 [Nicotiana syl192004307 (3)
JMSF050C14Sequence707006474 (5)ref|XP_009794054.1|3e-72PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like isoform X2 [Nicotiana syl149004307 (3)

Alignment

This contig is upended


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rJMSF032M18+                                                          GCCCGGGNTCCC
                      ____________________________________________________________
consensus                                                             GCCCGGGNTCCC
 
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rJMSF050C14+                                                       TGCCNTTGGTTTTNT
rJMSF017K01+                                                       TGCCNTTGGTTTTTT
rJMSF032M18+          TTTNAAAANNTNCNGNATNGNACCNTTTTNTNGGGGGTGNTNTGNTGCCNTTGGTTNTTT
                      ____________________________________________________________
consensus             TTTNAAAANNTNCNGNATNGNACCNTTTTNTNGGGGGTGNTNTGNTGCCNTTGGTTTTTT
 
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rJMSF050C14+          AAACNAAAAAAAAAAAAACTAGTTGTATCTGTTGTTGCATTAGTATGCTCGCCCCTCCCC
rJMSF017K01+          AAACCAAAAAAAAAAAAACTAGTTGTATCTGTTGTTGCATTAGTATGCTCGCCCCTCCCC
rJMSF032M18+          AAACNAAAAAAAAAAAAACTAGTTGTATCTGTTGTTGCATTAGTATGCTCGCCCCTCCCC
                      ____________________________________________________________
consensus             AAACCAAAAAAAAAAAAACTAGTTGTATCTGTTGTTGCATTAGTATGCTCGCCCCTCCCC
 
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rJMSF050C14+          CTGTTCCTATTTGGCTTGAGTGGTTTAAGATCTGTGTTTGCTGTCGCACATACGGAATT 
rJMSF017K01+          CTGTTCCTATTTGGCTTGAG                                        
rJMSF032M18+          CTGTTCCTATTTGGCTTGAGTGGTTTAAGATCTGTGTTTGCTGTCGCACATACGGAATTA
                      ____________________________________________________________
consensus             CTGTTCCTATTTGGCTTGAGTGGTTTAAGATCTGTGTTTGCTGTCGCACATACGGAATTA