Contig 004307:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017K01Sequence417006474 (5)ref|XP_009794054.1|3e-10PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like isoform X2 [Nicotiana syl181004307 (3)
JMSF032M18Sequence663006474 (5)ref|XP_009794054.1|5e-69PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like isoform X2 [Nicotiana syl192004307 (3)
JMSF050C14Sequence707006474 (5)ref|XP_009794054.1|3e-72PREDICTED: DEAD-box ATP-dependent RNA helicase 8-like isoform X2 [Nicotiana syl149004307 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF032M18+ GCCCGGGNTCCC
                      ____________________________________________________________
consensus GCCCGGGNTCCC
 
. : . : . : . : . : . :
rJMSF050C14+ TGCCNTTGGTTTTNT
rJMSF017K01+ TGCCNTTGGTTTTTT
rJMSF032M18+ TTTNAAAANNTNCNGNATNGNACCNTTTTNTNGGGGGTGNTNTGNTGCCNTTGGTTNTTT
                      ____________________________________________________________
consensus TTTNAAAANNTNCNGNATNGNACCNTTTTNTNGGGGGTGNTNTGNTGCCNTTGGTTTTTT
 
. : . : . : . : . : . :
rJMSF050C14+ AAACNAAAAAAAAAAAAACTAGTTGTATCTGTTGTTGCATTAGTATGCTCGCCCCTCCCC
rJMSF017K01+ AAACCAAAAAAAAAAAAACTAGTTGTATCTGTTGTTGCATTAGTATGCTCGCCCCTCCCC
rJMSF032M18+ AAACNAAAAAAAAAAAAACTAGTTGTATCTGTTGTTGCATTAGTATGCTCGCCCCTCCCC
                      ____________________________________________________________
consensus AAACCAAAAAAAAAAAAACTAGTTGTATCTGTTGTTGCATTAGTATGCTCGCCCCTCCCC
 
. : . : . : . : . : . :
rJMSF050C14+ CTGTTCCTATTTGGCTTGAGTGGTTTAAGATCTGTGTTTGCTGTCGCACATACGGAATT
rJMSF017K01+ CTGTTCCTATTTGGCTTGAG
rJMSF032M18+ CTGTTCCTATTTGGCTTGAGTGGTTTAAGATCTGTGTTTGCTGTCGCACATACGGAATTA
                      ____________________________________________________________
consensus CTGTTCCTATTTGGCTTGAGTGGTTTAAGATCTGTGTTTGCTGTCGCACATACGGAATTA