Contig 004304:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019P18Sequence584012077 (5)emb|CDP12040.1|6e-24unnamed protein product [Coffea canephora]707004304 (5)ref|XP_009589061.1|7e-34PREDICTED: uncharacterized protein At1g76660 [Nicotiana tomentosiformis]
JMSF013M08Sequence519012077 (5)ref|XP_009589061.1|4e-16PREDICTED: uncharacterized protein At1g76660 [Nicotiana tomentosiformis]711004304 (5)ref|XP_009589061.1|1e-27PREDICTED: uncharacterized protein At1g76660 [Nicotiana tomentosiformis]
JMSF020B24Sequence687012077 (5)gb|KDP25415.1|7e-63hypothetical protein JCGZ_20571 [Jatropha curcas]731004304 (5)ref|XP_006343965.1|3e-35PREDICTED: uncharacterized protein At1g76660-like [Solanum tuberosum]
JMSF032J11Sequence697012077 (5)gb|KDP25415.1|1e-44hypothetical protein JCGZ_20571 [Jatropha curcas]773004304 (5)ref|XP_009589061.1|3e-22PREDICTED: uncharacterized protein At1g76660 [Nicotiana tomentosiformis]
JMSF037D24Sequence722012077 (5)ref|XP_009589061.1|3e-66PREDICTED: uncharacterized protein At1g76660 [Nicotiana tomentosiformis]508004304 (5)emb|CBI22685.3|7e-17unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF020B24+ AAATTCATATAATA
                      ____________________________________________________________
consensus AAATTCATATAATA
 
. : . : . : . : . : . :
rJMSF013M08+ CACAGTACTTAATCACAGAG-TTCATTTGAGGTTACTGCAGAAG
rJMSF020B24+ GGTGGAAGAATGATGACACAGTACTTAATCACAGAGTTTCATTTGAGGTTACTGCAGAAG
                      ____________________________________________________________
consensus GGTGGAAGAATGATGACACAGTACTTAATCACAGAGTTTCATTTGAGGTTACTGCAGAAG
 
. : . : . : . : . : . :
rJMSF013M08+ ATTTTCTCAGGTGCATGGAAAAGAAGCCAGGATTGTTGTCCAAGGCTGGATTTGCTGCGC
rJMSF020B24+ ATTTTCTCAGGTGCATGGAAAAGAAGCCAGGATTGTTGTCCAAGGCTGGATTTGCTGCGC
rJMFF019P18+ TTTCTCAGGTGCATGGAAAAGAAGCCAGGATTGTTGTCCAAGGCTGGATTTGCTGCGC
rJMSF032J11+ TTTCTCAGGTGCATGGAAAAGAAGCCAGGATTGTTGTCCAAGGCTGGATTTGCTGCGC
                      ____________________________________________________________
consensus ATTTTCTCAGGTGCATGGAAAAGAAGCCAGGATTGTTGTCCAAGGCTGGATTTGCTGCGC
 
. : . : . : . : . : . :
rJMSF013M08+ CTCTTGAGAAAGGGAAATCTACTGCCAAAGGACAAGGATGCACTCCTGAAATGAAAATTG
rJMSF020B24+ CTCTTGAGAAAGGGAAATCTACTGCCAAAGGACAAGGATGCACTCCTGAAATGAAAATTG
rJMFF019P18+ CTCTTGAGAAAGGGAAATCTACTGCCAAAGGACAAGGATGCACTCCTGAAATGAAAATTG
rJMSF032J11+ CTCTTGAGAAAGGGAAATCTACTGCCAAAGGACAAGGATGCACTCCTGAAATGAAAATTG
                      ____________________________________________________________
consensus CTCTTGAGAAAGGGAAATCTACTGCCAAAGGACAAGGATGCACTCCTGAAATGAAAATTG
 
. : . : . : . : . : . :
rJMSF013M08+ GTCACGATTGTTTTGCAGTCGAGTCCTCAGGAGAAAGCTTCGAAAGGGCTTCTGCAAATG
rJMSF020B24+ GTCACGATTGTTTTGCAGTCGAGTCCTCAGGAGAAAGCTTCGAAAGGGCTTCTGCAAATG
rJMFF019P18+ GTCACGATTGTTTTGCAGTCGAGTCCTCAGGAGAAAGCTTCGAAAGGGCTTCTGCAAATG
rJMSF037D24+ TCCTCAGGAGAAAGCTTCGAAAGGGCTTCTGCAAATG
rJMSF032J11+ GTCACGATTGTTTTGCAGTCGAGTCCTCAGGAGAAAGCTTCGAAAGGGCTTCTGCAAATG
                      ____________________________________________________________
consensus GTCACGATTGTTTTGCAGTCGAGTCCTCAGGAGAAAGCTTCGAAAGGGCTTCTGCAAATG
 
. : . : . : . : . : . :
rJMSF013M08+ GAGAGGATAGAAAGCAGCACCATCAGAACCAGTCTATCACTCTCGGATCTTCAGAGGAAT
rJMSF020B24+ GAGAGGATAGAAAGCAGCACCATCAGAACCAGTCTATCACTCTCGGATCTTCAGAGGAAT
rJMFF019P18+ GAGAGGATAGAAAGCAGCACCATCAGAACCAGTCTATCACTCTCGGATCTTCAGAGGAAT
rJMSF037D24+ GAGAGGATAGAAAGCAGCACCATCAGAACCAGTCTATCACTCTCGGATCTTCAGAGGAAT
rJMSF032J11+ GAGAGGATAGAAAGCAGCACCATCAGAACCAGTCTATCACTCTCGGATCTTCAGAGGAAT
                      ____________________________________________________________
consensus GAGAGGATAGAAAGCAGCACCATCAGAACCAGTCTATCACTCTCGGATCTTCAGAGGAAT
 
. : . : . : . : . : . :
rJMSF013M08+ TCAACTTTTTTGACAACATAAACGATGAACTCTCTGACAAGCCTAGTGTTGCTGGCTCCG
rJMSF020B24+ TCAACTTTTTTGACAACATAAACGATGAACTCTCTGACAAGCCTAGTGTTGCTGGCTCCG
rJMFF019P18+ TCAACTTTTTTGACAACATAAACGATGAACTCTCTGACAAGCCTAGTGTTGCTGGCTCCG
rJMSF037D24+ TCAACTTTTTTGACAACATAAACGATGAACTCTCTGACAAGCCTAGTGTTGCTGGCTCCG
rJMSF032J11+ TCAACTTTTTTGACAACATAAACGATGAACTCTCTGACAAGCCTAGTGTTGCTGGCTCCG
                      ____________________________________________________________
consensus TCAACTTTTTTGACAACATAAACGATGAACTCTCTGACAAGCCTAGTGTTGCTGGCTCCG
 
. : . : . : . : . : . :
rJMSF013M08+ ACTGGTGGGCCAACGAGAAGGATCTCGGTCAGGGTTCCAGTCCTTGCCAGAAGTGGTCTT
rJMSF020B24+ ACTGGTGGGCCAACGAGAAGGATCTCGGTCAGGGTTCCAGTCCTTGCCAGAAGTGGTCTT
rJMFF019P18+ ACTGGTGGGCCAACGAGAAGGATCTCGGTCAGGGTTCCAGTCCTTGCCAGAAGTGGTCTT
rJMSF037D24+ ACTGGTGGGCCAACGAGAAGGATCTCGGTCAGGGTTCCAGTCCTTGCCAGAAGTGGTCTT
rJMSF032J11+ ACTGGTGGGCCAACGAGAAGGATCTCGGTCAGGGTTCCAGTCCTTGCCAGAAGTGGTCTT
                      ____________________________________________________________
consensus ACTGGTGGGCCAACGAGAAGGATCTCGGTCAGGGTTCCAGTCCTTGCCAGAAGTGGTCTT
 
. : . : . : . : . : . :
rJMSF013M08+ TCTTCCCGATGGTACAGCCAGGGATAAGCTAATCCACGCATCAGGCAAGT-AACACTAAA
rJMSF020B24+ TCTTCCCGATGGTACAGCCAGGGATAAGCTAATCCACGCATCAGGCAAGTAAACACTAAA
rJMFF019P18+ TCTTCCCGATGGTACAGCCAGGGATAAGCTAATCCACGCATCAGGCAAGTAAACACTAAA
rJMSF037D24+ TCTTCCCGATGGTACAGCCAGGGATAAGCTAATCCACGCATCAGGCAAGTAAACACTAAA
rJMSF032J11+ TCTTCCCGATGGTACAGCCAGGGATAAGCTAATCCACGCATCAGGCAAGTAAACACTAAA
                      ____________________________________________________________
consensus TCTTCCCGATGGTACAGCCAGGGATAAGCTAATCCACGCATCAGGCAAGTAAACACTAAA
 
. : . : . : . : . : . :
rJMSF013M08+ CAGCATTTCTCTTGAAAGATTTGAAACACAGCAGCTTTGAGCTAAATAGACAGGTAGTGA
rJMSF020B24+ CAGCATTTCTCTTGAAAGATTTGAAACACAGCAGCTTTGAGCTAAATAGACAGGTAGTGA
rJMFF019P18+ CAGCATTTCTCTTGAAAGATTTGAAACACAGCAGCTTTGAGCTAAATAGACAGGTAGTGA
rJMSF037D24+ CAGCATTTCTCTTGAAAGATTTGAAACACAGCAGCTTTGAGCTAAATAGACAGGTAGTGA
rJMSF032J11+ CAGCATTTCTCTTGAAAGATTTGAAACACAGCAGCTTTGAGCTAAATAGACAGGTAGTGA
                      ____________________________________________________________
consensus CAGCATTTCTCTTGAAAGATTTGAAACACAGCAGCTTTGAGCTAAATAGACAGGTAGTGA
 
. : . : . : . : . : . :
rJMSF013M08+ TAACAAAGCCATTGAAGTATATCATTTGAAGGCTGTTTTTGGAGCACTTCCTGACATTAG
rJMSF020B24+ TAACAAAGCCATTGAAGTATATCATTTGAAGGCTGTTTTTGGAGCACTTCCTGACATTAG
rJMFF019P18+ TAACAAAGCCATTGAAGTATATCATTTGAAGGCTGTTTTTGGAGCACTTCCTGACATTAG
rJMSF037D24+ TAACAAAGCCATTGAAGTATATCATTNGAAGGCTGTTTTTGGAGCACTTCCTGACATTAG
rJMSF032J11+ TAACAAAGCCATTGAAGTATATCATTTGAAGGCTGTTTTTGGAGCACTTCCTGACATTAG
                      ____________________________________________________________
consensus TAACAAAGCCATTGAAGTATATCATTTGAAGGCTGTTTTTGGAGCACTTCCTGACATTAG
 
. : . : . : . : . : . :
rJMSF013M08+ AAAAAGGATAAATAGGTGGTATGCATTTTGGTTTTATAGCATGGATAAAGTAGTTTTTCT
rJMSF020B24+ AAAAAGGATAAATAGGTGGTATGCATTTTGGTTTTATAGCATGGATAAAGTAGTTTTTCT
rJMFF019P18+ AAAAAGGATAAATAGGTGGTATGCATTTTGGTTTTATAGCATGGATAAAGTAGTTTTTCT
rJMSF037D24+ AAAAAGGATAAATAGGTGGTATGCATTTTGGTTTTATAGCATGGATAAAGTAGTTTTTCT
rJMSF032J11+ AAAAAGGATAAATAGGTGGTATGCATTTTGGTTTTATAGCATGGATAAAGTAGTTTTTCT
                      ____________________________________________________________
consensus AAAAAGGATAAATAGGTGGTATGCATTTTGGTTTTATAGCATGGATAAAGTAGTTTTTCT
 
. : . : . : . : . : . :
rJMSF013M08+ TCT-CCTGCGTGAGAAGCAGATTGACTCATAGTATTAGAGT
rJMSF020B24+ TCT-CCTGCGTGAGAAGCAGATTGACTCATAGTATTAGAGT
rJMFF019P18+ TCT-CCTGCGTGAGAAGCAGATTGACTCATAGTATTAGAGTCTNGAGATA
rJMSF037D24+ TCTGCCCGCGTGAGAAGCAGACTGACTCATAGTATTAGAGT
rJMSF032J11+ TCT-CCTGCGTGAGAAGCAGATTGACTCATAGTATTAGAGTCTAGAGATACTTGCTTTTG
                      ____________________________________________________________
consensus TCT-CCTGCGTGAGAAGCAGATTGACTCATAGTATTAGAGTCTAGAGATACTTGCTTTTG
 
. : . : . : . : . : . :
rJMSF032J11+ ACCTTTCAATTGTGTAATATAAATAATACATAGATTTATGACAGTTATTAGGATAAAATT
                      ____________________________________________________________
consensus ACCTTTCAATTGTGTAATATAAATAATACATAGATTTATGACAGTTATTAGGATAAAATT