Contig 004304:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF019P18Sequence584012077 (5)emb|CDP12040.1|6e-24unnamed protein product [Coffea canephora]707004304 (5)ref|XP_009589061.1|7e-34PREDICTED: uncharacterized protein At1g76660 [Nicotiana tomentosiformis]
JMSF013M08Sequence519012077 (5)ref|XP_009589061.1|4e-16PREDICTED: uncharacterized protein At1g76660 [Nicotiana tomentosiformis]711004304 (5)ref|XP_009589061.1|1e-27PREDICTED: uncharacterized protein At1g76660 [Nicotiana tomentosiformis]
JMSF020B24Sequence687012077 (5)gb|KDP25415.1|7e-63hypothetical protein JCGZ_20571 [Jatropha curcas]731004304 (5)ref|XP_006343965.1|3e-35PREDICTED: uncharacterized protein At1g76660-like [Solanum tuberosum]
JMSF032J11Sequence697012077 (5)gb|KDP25415.1|1e-44hypothetical protein JCGZ_20571 [Jatropha curcas]773004304 (5)ref|XP_009589061.1|3e-22PREDICTED: uncharacterized protein At1g76660 [Nicotiana tomentosiformis]
JMSF037D24Sequence722012077 (5)ref|XP_009589061.1|3e-66PREDICTED: uncharacterized protein At1g76660 [Nicotiana tomentosiformis]508004304 (5)emb|CBI22685.3|7e-17unnamed protein product [Vitis vinifera]

Alignment

This contig is upended


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rJMSF020B24+                                                        AAATTCATATAATA
                      ____________________________________________________________
consensus                                                           AAATTCATATAATA
 
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rJMSF013M08+                          CACAGTACTTAATCACAGAG-TTCATTTGAGGTTACTGCAGAAG
rJMSF020B24+          GGTGGAAGAATGATGACACAGTACTTAATCACAGAGTTTCATTTGAGGTTACTGCAGAAG
                      ____________________________________________________________
consensus             GGTGGAAGAATGATGACACAGTACTTAATCACAGAGTTTCATTTGAGGTTACTGCAGAAG
 
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rJMSF013M08+          ATTTTCTCAGGTGCATGGAAAAGAAGCCAGGATTGTTGTCCAAGGCTGGATTTGCTGCGC
rJMSF020B24+          ATTTTCTCAGGTGCATGGAAAAGAAGCCAGGATTGTTGTCCAAGGCTGGATTTGCTGCGC
rJMFF019P18+            TTTCTCAGGTGCATGGAAAAGAAGCCAGGATTGTTGTCCAAGGCTGGATTTGCTGCGC
rJMSF032J11+            TTTCTCAGGTGCATGGAAAAGAAGCCAGGATTGTTGTCCAAGGCTGGATTTGCTGCGC
                      ____________________________________________________________
consensus             ATTTTCTCAGGTGCATGGAAAAGAAGCCAGGATTGTTGTCCAAGGCTGGATTTGCTGCGC
 
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rJMSF013M08+          CTCTTGAGAAAGGGAAATCTACTGCCAAAGGACAAGGATGCACTCCTGAAATGAAAATTG
rJMSF020B24+          CTCTTGAGAAAGGGAAATCTACTGCCAAAGGACAAGGATGCACTCCTGAAATGAAAATTG
rJMFF019P18+          CTCTTGAGAAAGGGAAATCTACTGCCAAAGGACAAGGATGCACTCCTGAAATGAAAATTG
rJMSF032J11+          CTCTTGAGAAAGGGAAATCTACTGCCAAAGGACAAGGATGCACTCCTGAAATGAAAATTG
                      ____________________________________________________________
consensus             CTCTTGAGAAAGGGAAATCTACTGCCAAAGGACAAGGATGCACTCCTGAAATGAAAATTG
 
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rJMSF013M08+          GTCACGATTGTTTTGCAGTCGAGTCCTCAGGAGAAAGCTTCGAAAGGGCTTCTGCAAATG
rJMSF020B24+          GTCACGATTGTTTTGCAGTCGAGTCCTCAGGAGAAAGCTTCGAAAGGGCTTCTGCAAATG
rJMFF019P18+          GTCACGATTGTTTTGCAGTCGAGTCCTCAGGAGAAAGCTTCGAAAGGGCTTCTGCAAATG
rJMSF037D24+                                 TCCTCAGGAGAAAGCTTCGAAAGGGCTTCTGCAAATG
rJMSF032J11+          GTCACGATTGTTTTGCAGTCGAGTCCTCAGGAGAAAGCTTCGAAAGGGCTTCTGCAAATG
                      ____________________________________________________________
consensus             GTCACGATTGTTTTGCAGTCGAGTCCTCAGGAGAAAGCTTCGAAAGGGCTTCTGCAAATG
 
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rJMSF013M08+          GAGAGGATAGAAAGCAGCACCATCAGAACCAGTCTATCACTCTCGGATCTTCAGAGGAAT
rJMSF020B24+          GAGAGGATAGAAAGCAGCACCATCAGAACCAGTCTATCACTCTCGGATCTTCAGAGGAAT
rJMFF019P18+          GAGAGGATAGAAAGCAGCACCATCAGAACCAGTCTATCACTCTCGGATCTTCAGAGGAAT
rJMSF037D24+          GAGAGGATAGAAAGCAGCACCATCAGAACCAGTCTATCACTCTCGGATCTTCAGAGGAAT
rJMSF032J11+          GAGAGGATAGAAAGCAGCACCATCAGAACCAGTCTATCACTCTCGGATCTTCAGAGGAAT
                      ____________________________________________________________
consensus             GAGAGGATAGAAAGCAGCACCATCAGAACCAGTCTATCACTCTCGGATCTTCAGAGGAAT
 
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rJMSF013M08+          TCAACTTTTTTGACAACATAAACGATGAACTCTCTGACAAGCCTAGTGTTGCTGGCTCCG
rJMSF020B24+          TCAACTTTTTTGACAACATAAACGATGAACTCTCTGACAAGCCTAGTGTTGCTGGCTCCG
rJMFF019P18+          TCAACTTTTTTGACAACATAAACGATGAACTCTCTGACAAGCCTAGTGTTGCTGGCTCCG
rJMSF037D24+          TCAACTTTTTTGACAACATAAACGATGAACTCTCTGACAAGCCTAGTGTTGCTGGCTCCG
rJMSF032J11+          TCAACTTTTTTGACAACATAAACGATGAACTCTCTGACAAGCCTAGTGTTGCTGGCTCCG
                      ____________________________________________________________
consensus             TCAACTTTTTTGACAACATAAACGATGAACTCTCTGACAAGCCTAGTGTTGCTGGCTCCG
 
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rJMSF013M08+          ACTGGTGGGCCAACGAGAAGGATCTCGGTCAGGGTTCCAGTCCTTGCCAGAAGTGGTCTT
rJMSF020B24+          ACTGGTGGGCCAACGAGAAGGATCTCGGTCAGGGTTCCAGTCCTTGCCAGAAGTGGTCTT
rJMFF019P18+          ACTGGTGGGCCAACGAGAAGGATCTCGGTCAGGGTTCCAGTCCTTGCCAGAAGTGGTCTT
rJMSF037D24+          ACTGGTGGGCCAACGAGAAGGATCTCGGTCAGGGTTCCAGTCCTTGCCAGAAGTGGTCTT
rJMSF032J11+          ACTGGTGGGCCAACGAGAAGGATCTCGGTCAGGGTTCCAGTCCTTGCCAGAAGTGGTCTT
                      ____________________________________________________________
consensus             ACTGGTGGGCCAACGAGAAGGATCTCGGTCAGGGTTCCAGTCCTTGCCAGAAGTGGTCTT
 
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rJMSF013M08+          TCTTCCCGATGGTACAGCCAGGGATAAGCTAATCCACGCATCAGGCAAGT-AACACTAAA
rJMSF020B24+          TCTTCCCGATGGTACAGCCAGGGATAAGCTAATCCACGCATCAGGCAAGTAAACACTAAA
rJMFF019P18+          TCTTCCCGATGGTACAGCCAGGGATAAGCTAATCCACGCATCAGGCAAGTAAACACTAAA
rJMSF037D24+          TCTTCCCGATGGTACAGCCAGGGATAAGCTAATCCACGCATCAGGCAAGTAAACACTAAA
rJMSF032J11+          TCTTCCCGATGGTACAGCCAGGGATAAGCTAATCCACGCATCAGGCAAGTAAACACTAAA
                      ____________________________________________________________
consensus             TCTTCCCGATGGTACAGCCAGGGATAAGCTAATCCACGCATCAGGCAAGTAAACACTAAA
 
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rJMSF013M08+          CAGCATTTCTCTTGAAAGATTTGAAACACAGCAGCTTTGAGCTAAATAGACAGGTAGTGA
rJMSF020B24+          CAGCATTTCTCTTGAAAGATTTGAAACACAGCAGCTTTGAGCTAAATAGACAGGTAGTGA
rJMFF019P18+          CAGCATTTCTCTTGAAAGATTTGAAACACAGCAGCTTTGAGCTAAATAGACAGGTAGTGA
rJMSF037D24+          CAGCATTTCTCTTGAAAGATTTGAAACACAGCAGCTTTGAGCTAAATAGACAGGTAGTGA
rJMSF032J11+          CAGCATTTCTCTTGAAAGATTTGAAACACAGCAGCTTTGAGCTAAATAGACAGGTAGTGA
                      ____________________________________________________________
consensus             CAGCATTTCTCTTGAAAGATTTGAAACACAGCAGCTTTGAGCTAAATAGACAGGTAGTGA
 
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rJMSF013M08+          TAACAAAGCCATTGAAGTATATCATTTGAAGGCTGTTTTTGGAGCACTTCCTGACATTAG
rJMSF020B24+          TAACAAAGCCATTGAAGTATATCATTTGAAGGCTGTTTTTGGAGCACTTCCTGACATTAG
rJMFF019P18+          TAACAAAGCCATTGAAGTATATCATTTGAAGGCTGTTTTTGGAGCACTTCCTGACATTAG
rJMSF037D24+          TAACAAAGCCATTGAAGTATATCATTNGAAGGCTGTTTTTGGAGCACTTCCTGACATTAG
rJMSF032J11+          TAACAAAGCCATTGAAGTATATCATTTGAAGGCTGTTTTTGGAGCACTTCCTGACATTAG
                      ____________________________________________________________
consensus             TAACAAAGCCATTGAAGTATATCATTTGAAGGCTGTTTTTGGAGCACTTCCTGACATTAG
 
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rJMSF013M08+          AAAAAGGATAAATAGGTGGTATGCATTTTGGTTTTATAGCATGGATAAAGTAGTTTTTCT
rJMSF020B24+          AAAAAGGATAAATAGGTGGTATGCATTTTGGTTTTATAGCATGGATAAAGTAGTTTTTCT
rJMFF019P18+          AAAAAGGATAAATAGGTGGTATGCATTTTGGTTTTATAGCATGGATAAAGTAGTTTTTCT
rJMSF037D24+          AAAAAGGATAAATAGGTGGTATGCATTTTGGTTTTATAGCATGGATAAAGTAGTTTTTCT
rJMSF032J11+          AAAAAGGATAAATAGGTGGTATGCATTTTGGTTTTATAGCATGGATAAAGTAGTTTTTCT
                      ____________________________________________________________
consensus             AAAAAGGATAAATAGGTGGTATGCATTTTGGTTTTATAGCATGGATAAAGTAGTTTTTCT
 
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rJMSF013M08+          TCT-CCTGCGTGAGAAGCAGATTGACTCATAGTATTAGAGT                   
rJMSF020B24+          TCT-CCTGCGTGAGAAGCAGATTGACTCATAGTATTAGAGT                   
rJMFF019P18+          TCT-CCTGCGTGAGAAGCAGATTGACTCATAGTATTAGAGTCTNGAGATA          
rJMSF037D24+          TCTGCCCGCGTGAGAAGCAGACTGACTCATAGTATTAGAGT                   
rJMSF032J11+          TCT-CCTGCGTGAGAAGCAGATTGACTCATAGTATTAGAGTCTAGAGATACTTGCTTTTG
                      ____________________________________________________________
consensus             TCT-CCTGCGTGAGAAGCAGATTGACTCATAGTATTAGAGTCTAGAGATACTTGCTTTTG
 
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rJMSF032J11+          ACCTTTCAATTGTGTAATATAAATAATACATAGATTTATGACAGTTATTAGGATAAAATT
                      ____________________________________________________________
consensus             ACCTTTCAATTGTGTAATATAAATAATACATAGATTTATGACAGTTATTAGGATAAAATT