Contig 004303:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF008P08Sequence534002075 (8)gb|ACF17669.1|5e-39putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]756004303 (4)gb|ACF17669.1|1e-71putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]
JMFF011M04Sequence599002075 (8)gb|ACF17669.1|3e-54putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]708004303 (4)ref|XP_009793937.1|3e-55PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic-l
JMFF047I24Sequence424002075 (8)gb|ACF17669.1|7e-15putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]388004303 (4)ref|XP_011101308.1|1e-32PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic [
JMSF032F06Sequence693002075 (8)gb|ACF17669.1|6e-78putative pyruvate dehydrogenase E1 alpha subunit [Capsicum annuum]762004303 (4)gb|KJB49643.1|1e-44hypothetical protein B456_008G131200 [Gossypium raimondii]

Alignment

This contig is upended


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rJMFF008P08+                 AAAAAGGGTCCTGCTTTTGGTATGCCTGGTGTACATGTTGATGGAATGGATGT
                      ____________________________________________________________
consensus                    AAAAAGGGTCCTGCTTTTGGTATGCCTGGTGTACATGTTGATGGAATGGATGT
 
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rJMFF008P08+          CTTGAAGGTTCGGGAAGTAGCTCAGGAGGCTATTGGCAGAGCTAGGAGAGGGGAAGGCCC
rJMFF011M04+                      GGAAGTAGCTCAGGAGGCTATTGGCAGAGCTAGGAGAGGGGAAGGCCC
                      ____________________________________________________________
consensus             CTTGAAGGTTCGGGAAGTAGCTCAGGAGGCTATTGGCAGAGCTAGGAGAGGGGAAGGCCC
 
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rJMFF008P08+          GACTTTGGTTGAATGCGAGACTTACAGGTTCCAGAGGACACTCTTTGGCCGATCCAGATG
rJMFF011M04+          GACTTTGGTTGAATGCGAGACTTACAGGTTCCAGAGGACACTCTTTGGCCGATCCAGATG
                      ____________________________________________________________
consensus             GACTTTGGTTGAATGCGAGACTTACAGGTTCCAGAGGACACTCTTTGGCCGATCCAGATG
 
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rJMFF008P08+          AGCTTCGTGACCCTTCTGAGAAGAGTCACTATGCAGCTCGTGATCCCATCGCTGCATTGA
rJMFF011M04+          AGCTTCGTGACCCTTCTGAGAAGAGTCACTATGCAGCTCGTGATCCCATCGCTGCATTGA
rJMSF032F06+                            AGAAGAGTCACTATGCAGCTCGTGATCCCATCGCTGCATTGA
                      ____________________________________________________________
consensus             AGCTTCGTGACCCTTCTGAGAAGAGTCACTATGCAGCTCGTGATCCCATCGCTGCATTGA
 
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rJMFF008P08+          AAAAGTACTTATTTGATAACAAGCTTGCAACTGAAGAGGAATTGAAGGCTATTGAGAAAA
rJMFF011M04+          AAAAGTACTTATTTGATAACAAGCTTGCAACTGAAGAGGAATTGAAGGCTATTGAGAAAA
rJMFF047I24+                                GCTTGCAACTGAAGAGGAATGAAGGGCTATTGAGAAAA
rJMSF032F06+          AAAAGTACTTATTTGATANCAAGCTTGCAACTGAAGAGGAATTGAAGGCTATTGAGAAAA
                      ____________________________________________________________
consensus             AAAAGTACTTATTTGATAACAAGCTTGCAACTGAAGAGGAATTGAAGGCTATTGAGAAAA
 
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rJMFF008P08+          AAATTGACGAGATAGTTGAAGAGTCTGTTGAGTTTGCTGATGAAAGCCCTGTTCCTGCTC
rJMFF011M04+          AAATTGACGAGATAGTTGAAGAGTCTGTTGAGTTTGCTGATGAAAGCCCTGTTCCTGCTC
rJMFF047I24+          AAATTGACGAGATAGTTGAAGAGTCTGTTGAGTTTGCTGATGAAAGCCCTGTTCCTGCTC
rJMSF032F06+          AAATTGACGAGATAGTTGAAGAGTCTGTTGAGTTTGCTGATGAAAGCCCTGTTCCTGCTC
                      ____________________________________________________________
consensus             AAATTGACGAGATAGTTGAAGAGTCTGTTGAGTTTGCTGATGAAAGCCCTGTTCCTGCTC
 
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rJMFF008P08+          GAACTCAGCTTCTAGAAAACGTATTTGCTGATCCAAGGGGCTTTGGAATTGGACCTGATG
rJMFF011M04+          GAACTCAGCTTCTAGAAAACGTATTTGCTGATCCAAGGGGCTTTGGAATTGGACCTGATG
rJMFF047I24+          GAACTCAGCTTCTAGAAAACGTATTTGCTGATCCAAGGGGCTTTGGAATTGGACCTGATG
rJMSF032F06+          GAACTCAGCTTCTAGAAAACGTATTTGCTGATCCAAGGGGCTTTGGAATTGGACCTGATG
                      ____________________________________________________________
consensus             GAACTCAGCTTCTAGAAAACGTATTTGCTGATCCAAGGGGCTTTGGAATTGGACCTGATG
 
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rJMFF008P08+          GGAGGTACCGATGTGAGGATCCTAAGTTCACCGAGGGCACTGCACAAGTTTAACTCTCGC
rJMFF011M04+          GGAGGTACCGATGTGAGGATCCTAAGTTCACCGA-GGCACTGCACAAGTTTAACTCTCGC
rJMFF047I24+          GGAGGTACCGATGTGAGGATCCTAAGTTCACCGAGGGCACTGCACAAGTTTAACTCTCGC
rJMSF032F06+          GGAGGTACCGATGTGAGGATCCTAAGTTCACCGAGGGCACTGCACAAGTTTAACTCTCGC
                      ____________________________________________________________
consensus             GGAGGTACCGATGTGAGGATCCTAAGTTCACCGAGGGCACTGCACAAGTTTAACTCTCGC
 
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rJMFF008P08+          TGCTTGCTGCTTCTCTCTTAATCTAGATAACATTGCCTTGGGTATTTATATCTAGTTGCT
rJMFF011M04+          TGCTTGCTGCTTCTCTCTTAATCTAGATAACATTGCCTTGGGTATTTATATCTAGTTGCT
rJMFF047I24+          TGCTTGCTGCTTCTCTCTTAATCTAGATAACATTGCCTTGGGTATTTATATCTAGTTGCT
rJMSF032F06+          TGCTTGCTGCTTCTCTCTTAATCTAGATAACATTGCCTTGGGTATTTATATCTAGTTGCT
                      ____________________________________________________________
consensus             TGCTTGCTGCTTCTCTCTTAATCTAGATAACATTGCCTTGGGTATTTATATCTAGTTGCT
 
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rJMFF008P08+          GATAATAGAGAGCTTCATATGCATTATTCAGTTTATATCAGAAGAATTTATTATCTTATG
rJMFF011M04+          GATAATAGAGAGCTTCATATGCATTATTCAGTTTATATCAGAAGAATTTATTATCTTATG
rJMFF047I24+          GATAATAGAGAGCTTCATATGCATTATTCAGTTTATATCAGAAGAATTTATTATCTTATG
rJMSF032F06+          GATAATAGAGAGCTTCATATGCATTATTCAGTTTATATCAGAAGAATTTATTATCTTATG
                      ____________________________________________________________
consensus             GATAATAGAGAGCTTCATATGCATTATTCAGTTTATATCAGAAGAATTTATTATCTTATG
 
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rJMFF008P08+          TATTGTGAGTTATTATTATTATTATTTTTGCTTGTGCACATTTTGTTTACAGATTTTGTT
rJMFF011M04+          TATTGTGAGTTATTATTATTATTATTTTTGCTTGTGCACATTTTGTTTACAGATTTTGTT
rJMFF047I24+          TATTGTGAGTTATTATTATTATTATTTTTGCTTGTGCAC                     
rJMSF032F06+          TATTGTGAGTTATTATTATTATTATTTTTGCTTGTGCACATTTTGTTTACAGATTTTGTT
                      ____________________________________________________________
consensus             TATTGTGAGTTATTATTATTATTATTTTTGCTTGTGCACATTTTGTTTACAGATTTTGTT
 
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rJMFF008P08+          GTTCTTTCCTCCTGCTGTTGCTGCTGCTGCATTATTTGGATGAATGGGTAATCCTGAAGG
rJMFF011M04+          GTTCTTTCCTCCTGCTGTTGCTGCTGCTGCATTATTTGGATGAATGGGTAATCCTGAAGG
rJMSF032F06+          GTTCTTTCCTCCTGCTGTTGCTGCTGCTGCATTATTTGGATGAATGGGTAATCCTGAAGG
                      ____________________________________________________________
consensus             GTTCTTTCCTCCTGCTGTTGCTGCTGCTGCATTATTTGGATGAATGGGTAATCCTGAAGG
 
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rJMFF008P08+          GGTTTGCTTTTCCTGTATTTGTTAGTTGAGGCAATAT                       
rJMFF011M04+          GGTTTGCTTTTCCTGTATTTGTTAGTTGAGGCAATATTAAAAGATTGTTGAAGGTTAAAT
rJMSF032F06+          GGTTTGCTTTTCCTGTATTTGTTAGTTGAGGCAATATTAAAAGATTGTTGAAGGTTAAAT
                      ____________________________________________________________
consensus             GGTTTGCTTTTCCTGTATTTGTTAGTTGAGGCAATATTAAAAGATTGTTGAAGGTTAAAT
 
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rJMSF032F06+          TGAGTATGAGGTCAGGTGAACTATATTTTGGTTTTGGTTTTGGTTTTGGTTTTGGTTTTG
                      ____________________________________________________________
consensus             TGAGTATGAGGTCAGGTGAACTATATTTTGGTTTTGGTTTTGGTTTTGGTTTTGGTTTTG
 
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rJMSF032F06+          GTTAATTGGTGTTGTTGAGAAGCAGGCACAAATTGACCAAAGGTGCTAATTCTTCAAAAC
                      ____________________________________________________________
consensus             GTTAATTGGTGTTGTTGAGAAGCAGGCACAAATTGACCAAAGGTGCTAATTCTTCAAAAC
 
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rJMSF032F06+          TCAAAACTACTACAGTATTATGTACAAGACCAATCAAGTGTGCTTCACCAAAATGGCTTG
                      ____________________________________________________________
consensus             TCAAAACTACTACAGTATTATGTACAAGACCAATCAAGTGTGCTTCACCAAAATGGCTTG