| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS167D02 | Sequence | 491 | 004301 (4) | emb|CDP20806.1| | 2e-40 | unnamed protein product [Coffea canephora] | |||||
| JMSF027N17 | Sequence | 636 | 002319 (4) | ref|XP_006366870.1| | 2e-35 | PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Sol | 757 | 004301 (4) | emb|CDP20806.1| | 9e-89 | unnamed protein product [Coffea canephora] |
| JMSF032B02 | Sequence | 707 | 002319 (4) | ref|XP_006366870.1| | 9e-25 | PREDICTED: palmitoyl-acyl carrier protein thioesterase, chloroplastic-like [Sol | 762 | 004301 (4) | emb|CDP20806.1| | 8e-83 | unnamed protein product [Coffea canephora] |
| JMSF033B02 | Sequence | 219 | 004301 (4) | ||||||||
This contig is upended
. : . : . : . : . : . :
rJMSF027N17+ GGGACATGTTAATGAGAGCTTCCAG
rJMSF032B02+ TACGCGATAGTNATACTGGGGACATGTTAATGAGAGCTTCCAG
____________________________________________________________
consensus TACGCGATAGTNATACTGGGGACATGTTAATGAGAGCTTCCAG
. : . : . : . : . : . :
rJMSF027N17+ CCTTTGGGTAATGATGAATAAAGAGACGAGGAAATTAGCAAAAATGGATGATGAGGTTCG
rJMSF032B02+ CC-TTNGGTAATGATGAATAAAGAGACGAGGAAATTAGCAAAAATGGATGATGAGGTTCG
____________________________________________________________
consensus CCTTTGGGTAATGATGAATAAAGAGACGAGGAAATTAGCAAAAATGGATGATGAGGTTCG
. : . : . : . : . : . :
rJMSF027N17+ AGCTGAAATCGGAAGCTATTTTGTGGATGTGCCTCCTGTTATTGATGAAGACGGTAAGAG
rJMSF032B02+ AGCTGAAATCGGAAGCTATTTTGTGGATGTGCCTCCTGTTATTGATGAAGACGGTAAGAG
____________________________________________________________
consensus AGCTGAAATCGGAAGCTATTTTGTGGATGTGCCTCCTGTTATTGATGAAGACGGTAAGAG
. : . : . : . : . : . :
rJMSF027N17+ GCTTCCAAAGCTCGATGATGAGAGAGCAGACTATGTTCGCACTGGGTTAACTCCAAAGTG
rJMSF032B02+ GCTTCCAAAGCTCGATGATGAGAGAGCAGACTATGTTCGCACTGGGTTAACTCCAAAGTG
____________________________________________________________
consensus GCTTCCAAAGCTCGATGATGAGAGAGCAGACTATGTTCGCACTGGGTTAACTCCAAAGTG
. : . : . : . : . : . :
rJMSF027N17+ GAGTGATTTAGATGTGAACCAGCATGTTAATAATGTGAAATATATTGCCTGGATTCTTGA
JMFS167D02- GTGAAATATATTGCCTGGATTCTTGA
rJMSF032B02+ GAGTGATTTAGATGTGAACCAGCATGTTAATAATGTGAAATATATTGCCTGGATTCTTGA
____________________________________________________________
consensus GAGTGATTTAGATGTGAACCAGCATGTTAATAATGTGAAATATATTGCCTGGATTCTTGA
. : . : . : . : . : . :
rJMSF027N17+ GAGTGCTCCTTTGCCAATCTTGGAGAGTCACGAGCTAGCTTCCATGACGTTGGAGTACAG
JMFS167D02- GAGTGCTCCTTTGCCAATCTTGGAGAGTCACGAGCTAGCTTCCATGACGTTGGAGTACAG
rJMSF032B02+ GAGTGCTCCTTTGCCAATCTTGGAGAGTCACGAGCTAGCTTCCATGACGTTGGAGTACAG
____________________________________________________________
consensus GAGTGCTCCTTTGCCAATCTTGGAGAGTCACGAGCTAGCTTCCATGACGTTGGAGTACAG
. : . : . : . : . : . :
rJMSF027N17+ GCGGGAATGCAGGAAGGACAGCACGGTGCAATCCCTCACGTCTATTTTGGGCAACGACAT
JMFS167D02- GCGGGAATGCAGGAAGGACAGCACGGTGCAATCCCTCACGTCTATTTTGGGCAACGACAT
rJMSF032B02+ GCGGGAATGCAGGAAGGACAGCACGGTGCAATCCCTCACGTCTATTTTGGGCAACGACAT
____________________________________________________________
consensus GCGGGAATGCAGGAAGGACAGCACGGTGCAATCCCTCACGTCTATTTTGGGCAACGACAT
. : . : . : . : . : . :
rJMSF027N17+ TGGCAATCTGGCCGATTCTGGGTCCATCGAGTGCCAGCATTTGCTTCGCCTCGAGGGCGG
JMFS167D02- TGGCAATCTGGCCGATTCTGGGTCCATCGAGTGCCAGCATTTGCTTCGCCTCGAGGGCGG
rJMSF033B02+ GAGGGCGG
rJMSF032B02+ TGGCAATCTGGCCGATTCTGGGTCCATCGAGTGCCAGCATTTGCTTCGCCTCGAGGGCGG
____________________________________________________________
consensus TGGCAATCTGGCCGATTCTGGGTCCATCGAGTGCCAGCATTTGCTTCGCCTCGAGGGCGG
. : . : . : . : . : . :
rJMSF027N17+ TACTGAAATCGTGAAGGGAAGAACCGAGTGGAGGCCAAAATTAGCCAGCGGGTTTGGGAG
JMFS167D02- TACTGAAATCGTGAAGGGAAGAACCGAGTGGAGGCCAAAATTAGCCAGCGGGTTTGGGAG
rJMSF033B02+ TACNGAAATCNTGAAGGGAAGANCCGAGNGGAGGCCNAAATTANCCAGCGGGTTNGGGAG
rJMSF032B02+ TACTGAAATCGTGAAGGGAAGAACCGAGTGGAGGCCAAAATTAGCCAGCGGGTTTGGGAG
____________________________________________________________
consensus TACTGAAATCGTGAAGGGAAGAACCGAGTGGAGGCCAAAATTAGCCAGCGGGTTTGGGAG
. : . : . : . : . : . :
rJMSF027N17+ CGTGGCCGAGCTCTCCACAGAAAGTGGCTAAGCTCGACGTTCTTCACAGCCGGACTCCAT
JMFS167D02- CGTGGCCGAGCTCTCCACAGAAAGTGGCTAAGCTCGACGTTCTTCACAGCCGGACTCCAT
rJMSF033B02+ CGTGGCCGAGCTCTCCNCNGAAAGNGGCTAAGCTTGACGTTCTTCACAGCCGGACTCCAN
rJMSF032B02+ CGTGGCCGAGCTCTCCACAGAAAGTGGCTAAGCTCGACGTTCTTCACAGCCGGACTCCAT
____________________________________________________________
consensus CGTGGCCGAGCTCTCCACAGAAAGTGGCTAAGCTCGACGTTCTTCACAGCCGGACTCCAT
. : . : . : . : . : . :
rJMSF027N17+ GCAACAAGACGACACAAGTCCCCTGTACATAGAATCAATCTACTTGTGTTCATTAATATT
JMFS167D02- GCAACAAGACGACACAAGTCCCCTGTACATAGAATCAATCTACTTGTGTTCATTAATATT
rJMSF033B02+ GCAACAAGACGACACAAGTCCCCTGTACATCGAATCAATNTACTTGTGTTCANTAATATT
rJMSF032B02+ GCAACAAGACGACACAAGTCCCCTGTACATAGAATCAATCTACTTGTGTTCATTAATATT
____________________________________________________________
consensus GCAACAAGACGACACAAGTCCCCTGTACATAGAATCAATCTACTTGTGTTCATTAATATT
. : . : . : . : . : . :
rJMSF027N17+ CTCCGGCCTTATCTTCGTATTTTTGCTTGTATTTTTGTTGTTGTGTTTTTTGTCATTTGG
JMFS167D02- CTCCGGCCTTATCTTCGTATTTTTGCTTGTATTTTTGTTGTTGTGTTTTTTGTCATTTGG
rJMSF033B02+ CTCCGGCCTTATNTTCGTATNTTTGCTTG
rJMSF032B02+ CTCCGGCCTTATCTTCGTATTTTTGCTTGTATTTTTGTTGTTGTGTTTTTTGTCATTTGG
____________________________________________________________
consensus CTCCGGCCTTATCTTCGTATTTTTGCTTGTATTTTTGTTGTTGTGTTTTTTGTCATTTGG
. : . : . : . : . : . :
rJMSF027N17+ ATACATAGAGAGCAGTTGTATGTAGAGCTTGCCGTTTGTTCTTTCCTCTTCATGGATTAC
JMFS167D02- ATACATAGAGAGCAGTTGTATGTAGAGCTTGCCGTTTGTTCTTTC
rJMSF032B02+ ATACATAGAGAGCAGTTGTATGTAGAGCTTGCCGTTTGTTCTTTCCTCTTCATGGATTAC
____________________________________________________________
consensus ATACATAGAGAGCAGTTGTATGTAGAGCTTGCCGTTTGTTCTTTCCTCTTCATGGATTAC