Contig 004300:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031M16Sequence626004300 (2)ref|XP_009775751.1|8e-131PREDICTED: peptide chain release factor 1-like, mitochondrial [Nicotiana sylves709004300 (2)gb|ACU20952.1|9e-55unknown [Glycine max]

Alignment

This contig is upended


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JMSF031M16-                             GCTGGAATTTGGGCCGGTGATCTTGTAGGTACGTATGTATCA
                      ____________________________________________________________
consensus                               GCTGGAATTTGGGCCGGTGATCTTGTAGGTACGTATGTATCA
 
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JMSF031M16-           AAAGTATAGTGAACGTAACTCATGGAAGCACAGCCTAGTTTCGTGCTCGGAGGCTGATAT
                      ____________________________________________________________
consensus             AAAGTATAGTGAACGTAACTCATGGAAGCACAGCCTAGTTTCGTGCTCGGAGGCTGATAT
 
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JMSF031M16-           AGGGGGTTTTAAGACATGCGTCTTGGAGATCAAAGGAAAACGTGTTTATAGCAAATTGAA
                      ____________________________________________________________
consensus             AGGGGGTTTTAAGACATGCGTCTTGGAGATCAAAGGAAAACGTGTTTATAGCAAATTGAA
 
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JMSF031M16-           GTATGAATCTGGTGTTCATCGAGTTCAACGTTTTCCCCAAACAGAAACTCAAGGCCGTGT
                      ____________________________________________________________
consensus             GTATGAATCTGGTGTTCATCGAGTTCAACGTTTTCCCCAAACAGAAACTCAAGGCCGTGT
 
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JMSF031M16-           ACACACTTCTACTGCAACAGTTGCTATCATGCCAGAGGCTGATGAAGTTGAGGTGGAAAT
                      ____________________________________________________________
consensus             ACACACTTCTACTGCAACAGTTGCTATCATGCCAGAGGCTGATGAAGTTGAGGTGGAAAT
 
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JMSF031M16-           TGATCCAAAGGATATTGAGCTTACAACTGCACGCTCTGGTGGCGCTGGAGGGCAGAATGT
                      ____________________________________________________________
consensus             TGATCCAAAGGATATTGAGCTTACAACTGCACGCTCTGGTGGCGCTGGAGGGCAGAATGT
 
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JMSF031M16-           CAACAAGGTGGAGACAGCTATTGATCTTTTCCACAAACCAACAGGAATCAGAATCTTTTG
                      ____________________________________________________________
consensus             CAACAAGGTGGAGACAGCTATTGATCTTTTCCACAAACCAACAGGAATCAGAATCTTTTG
 
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JMSF031M16-           TACTGAAGAAAGGACTCAGCTTAAAAATAAGAATCGAGCTTTCCAATTACTCAGAGCAAA
rJMSF031M16+                     GGACTCAGCTTAAAAATAAGAATCGAGCTTTCCAATTACTCAGAGCAAA
                      ____________________________________________________________
consensus             TACTGAAGAAAGGACTCAGCTTAAAAATAAGAATCGAGCTTTCCAATTACTCAGAGCAAA
 
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JMSF031M16-           GCTGTATGAAATTAAAGTGAGGGAGCAGCAAGAGTCGATTAGGAATCAAAGAAAATTGCA
rJMSF031M16+          GCTGTATGAAATTAAAGTGAGGGAGCAGCAAGAGTCGATTAGGAATCAAAGAAAATTGCA
                      ____________________________________________________________
consensus             GCTGTATGAAATTAAAGTGAGGGAGCAGCAAGAGTCGATTAGGAATCAAAGAAAATTGCA
 
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JMSF031M16-           GGTGGGCACTGGTTCTCGTGCAGAAAAAATTCGGACATACAACTTCAAGGACAACAGGGT
rJMSF031M16+          GGTGGGCACTGGTTCTCGTGCAGAAAAAATTCGGACATACAACTTCAAGGACAACAGGGT
                      ____________________________________________________________
consensus             GGTGGGCACTGGTTCTCGTGCAGAAAAAATTCGGACATACAACTTCAAGGACAACAGGGT
 
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JMSF031M16-           CACTGATCACCGTTTAAAAATGAATTTTGAACTTACCTCCTTCC                
rJMSF031M16+          CACTGATCACCGTTTAAAAATGAATTTTGAACTTACCTCCTTCCTTGAAGGCGACATCGA
                      ____________________________________________________________
consensus             CACTGATCACCGTTTAAAAATGAATTTTGAACTTACCTCCTTCCTTGAAGGCGACATCGA
 
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rJMSF031M16+          TGCAGCTATTCAGTCTTGCACTACTATGGAGCAGAAGGAATTACTGCAGGAACTTGCAGA
                      ____________________________________________________________
consensus             TGCAGCTATTCAGTCTTGCACTACTATGGAGCAGAAGGAATTACTGCAGGAACTTGCAGA
 
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rJMSF031M16+          GTCTGTTGGAGCAATGGCTTGATTTCAGTCATCCCGATTTCTTACTAAAATCGGGATTTT
                      ____________________________________________________________
consensus             GTCTGTTGGAGCAATGGCTTGATTTCAGTCATCCCGATTTCTTACTAAAATCGGGATTTT
 
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rJMSF031M16+          TAAACTCCTCTCTTCTGTGCCGTCTTCATGTGTTTGTAACACAGCAAGGATTTGGGTGTA
                      ____________________________________________________________
consensus             TAAACTCCTCTCTTCTGTGCCGTCTTCATGTGTTTGTAACACAGCAAGGATTTGGGTGTA
 
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rJMSF031M16+          TAGTGGGCAACTTGTTTACTGGGAGATTGGTATAGACAAGTCAAAGATGCCAACTTATAA
                      ____________________________________________________________
consensus             TAGTGGGCAACTTGTTTACTGGGAGATTGGTATAGACAAGTCAAAGATGCCAACTTATAA
 
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rJMSF031M16+          TTGGTATAATTCTCGGAATCCATTTGAAGATTTGCTCAAGTCAATACTTATCATACGACT
                      ____________________________________________________________
consensus             TTGGTATAATTCTCGGAATCCATTTGAAGATTTGCTCAAGTCAATACTTATCATACGACT
 
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rJMSF031M16+          GGCATTTGATCACAACGGGTTGACTCGTGCCGTTCAAATGGATCTGTTCCTTCAGTTATT
                      ____________________________________________________________
consensus             GGCATTTGATCACAACGGGTTGACTCGTGCCGTTCAAATGGATCTGTTCCTTCAGTTATT
 
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rJMSF031M16+          TTTGTTTGTTTTCCATACTTAGACTCAAGACTTGTCAAATACGGAGTCACATGAATCCTG
                      ____________________________________________________________
consensus             TTTGTTTGTTTTCCATACTTAGACTCAAGACTTGTCAAATACGGAGTCACATGAATCCTG
 
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rJMSF031M16+          GCTTACTTTTAACCATGCCGGTTATTTATAGTTATTATTAAGGGTAACCCACATTCCGAC
                      ____________________________________________________________
consensus             GCTTACTTTTAACCATGCCGGTTATTTATAGTTATTATTAAGGGTAACCCACATTCCGAC