| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN029M07 | Sequence | 657 | 004293 (5) | ref|XP_009783910.1| | 2e-109 | PREDICTED: actin-related protein 7 isoform X1 [Nicotiana sylvestris] | |||||
| JMSF013D10 | Sequence | 231 | 005156 (6) | 795 | 004293 (5) | ref|XP_004250065.1| | 3e-117 | PREDICTED: actin-related protein 7 [Solanum lycopersicum] | |||
| JMSF030I22 | Sequence | 660 | 005156 (6) | emb|CDP04578.1| | 2e-34 | unnamed protein product [Coffea canephora] | 700 | 004293 (5) | gb|KDO83435.1| | 5e-98 | hypothetical protein CISIN_1g017944mg [Citrus sinensis] |
| JMSF039F01 | Sequence | 623 | 005156 (6) | emb|CDP04578.1| | 1e-30 | unnamed protein product [Coffea canephora] | 928 | 004293 (5) | ref|XP_004250065.1| | 1e-169 | PREDICTED: actin-related protein 7 [Solanum lycopersicum] |
| JMSF049J09 | Sequence | 677 | 005156 (6) | emb|CDP04578.1| | 1e-44 | unnamed protein product [Coffea canephora] | 765 | 004293 (5) | ref|XP_004250065.1| | 2e-127 | PREDICTED: actin-related protein 7 [Solanum lycopersicum] |
This contig is upended
. : . : . : . : . : . :
rJMSF039F01+ CAGGGAACAATTAGTACAGCTGATGTTTGAGACATTTAACATCTCAGGG
____________________________________________________________
consensus CAGGGAACAATTAGTACAGCTGATGTTTGAGACATTTAACATCTCAGGG
. : . : . : . : . : . :
rJMSF039F01+ TTTTATGCCTCTGAGCAAGCAGTGCTGTCACTCTATGCTGTTGGGCGCATATCAGGATGC
____________________________________________________________
consensus TTTTATGCCTCTGAGCAAGCAGTGCTGTCACTCTATGCTGTTGGGCGCATATCAGGATGC
. : . : . : . : . : . :
rJMSF049J09+ GTTCAG
rJMSF039F01+ ACAGTTGACATTGGTCATGGAAAAATAGATATTGCACCAGTAATTGAGGGTGCTGTTCAG
____________________________________________________________
consensus ACAGTTGACATTGGTCATGGAAAAATAGATATTGCACCAGTAATTGAGGGTGCTGTTCAG
. : . : . : . : . : . :
rJMSF049J09+ CACATAGCTTCCAGAAGGTTGGAACTTGGCGGTGTAGATCTGACAAAGCTGCTGGCAGAA
rJMSF039F01+ CACATAGCTTCCAGAAGGTTGGAACTTGGCGGTGTAGATCTGACAAAGCTGCTGGCAGAA
rJMSF013D10+ TGACAAAGCTGCTGGCAGAA
____________________________________________________________
consensus CACATAGCTTCCAGAAGGTTGGAACTTGGCGGTGTAGATCTGACAAAGCTGCTGGCAGAA
. : . : . : . : . : . :
rJMSF049J09+ AAGCTCAGTAAATCAAATCCAATGGTGAAACTCAAGATGTCAGATGTTGAGAAGATAAAA
JMFN029M07- GTGAAACTCAAGATGTCAGATGTTGAGAAGATAAAA
rJMSF039F01+ AAGCTCAGTAAATCAAATCCAATGGTGAAACTCAAGATGTCAGATGTTGAGAAGATAAAA
rJMSF013D10+ AAGCTCAGTAAATCAAATCCAATGGTGAAACTCAAGATGTCAGATGTTGAGAAGATAAAA
____________________________________________________________
consensus AAGCTCAGTAAATCAAATCCAATGGTGAAACTCAAGATGTCAGATGTTGAGAAGATAAAA
. : . : . : . : . : . :
rJMSF049J09+ GAGCAATATGCATGCTGTGCTGAGGATGATATTGCTTATGAGAAGATGCAACAAACTTGC
JMFN029M07- GAGCAATATGCATGCTGTGCTGAGGATGATATTGCTTATGAGAAGATGCAACAAACTTGC
rJMSF039F01+ GAGCAATATGCATGCTGTGCTGAGGATGATATTGCTTATGAGAAGATGCAACAAACTTGC
rJMSF013D10+ GAGCAATATGCATGCTGTGCTGAGGATGATATTGCTTATGAGAAGATGCAACAAACTTGC
rJMSF030I22+ CTGAGGATGATATTGCTTATGAGAAGATGCAACAAACTTGC
____________________________________________________________
consensus GAGCAATATGCATGCTGTGCTGAGGATGATATTGCTTATGAGAAGATGCAACAAACTTGC
. : . : . : . : . : . :
rJMSF049J09+ CTAGAAGAGGAGCACACACTTCCTGATGGCCAGGTTATCAAAATTGGAAAAGAAAGATAT
JMFN029M07- CTAGAAGAGGAGCACACACTTCCTGATGGCCAGGTTATCAAAATTGGAAAAGAAAGATAT
rJMSF039F01+ CTAGAAGAGGAGCACACACTTCCTGATGGCCAGGTTATCAAAATTGGAAAAGAAAGATAT
rJMSF013D10+ CTAGAAGAGGAGCACACACTTCCTGATGGCCAGGTTATCAAAATTGGAAAAGAAAGATAT
rJMSF030I22+ CTAGAAGAGGAGCACACACTTCCTGATGGCCAGGTTATCAAAATTGGAAAAGAAAGATAT
____________________________________________________________
consensus CTAGAAGAGGAGCACACACTTCCTGATGGCCAGGTTATCAAAATTGGAAAAGAAAGATAT
. : . : . : . : . : . :
rJMSF049J09+ ACTATAGGGGAGGCCTTGTTCCAATCCTCTATTCTGGGTTTAGAAACACATGGAATTGTG
JMFN029M07- ACTATAGGGGAGGCCTTGTTCCAATCCTCTATTCTGGGTTTAGAAACACATGGAATTGTG
rJMSF039F01+ ACTATAGGGGAGGCCTTGTTCCAATCCTCTATTCTGGGTTTAGAAACACATGGAATTGTG
rJMSF013D10+ ACTATAGGGGAGGCCTTGTTCCAATCCTCTATTCTGGGTTTAGAAACACATGGAATTGTG
rJMSF030I22+ ACTATAGGGGAGGCCTTGTTCCAATCCTCTATTCTGGGTTTAGAAACACATGGAATTGTG
____________________________________________________________
consensus ACTATAGGGGAGGCCTTGTTCCAATCCTCTATTCTGGGTTTAGAAACACATGGAATTGTG
. : . : . : . : . : . :
rJMSF049J09+ GAGCAACTTGTTCATAGTATTTCAACTGTATCATCTGAAAATCACCGCCAACTGCTAGAA
JMFN029M07- GAGCAACTTGTTCATAGTATTTCAACTGTATCATCTGAAAATCACCGCCAACTGCTAGAA
rJMSF039F01+ GAGCAACTTGTTCATAGTATTTCAACTGTATCATCTGAAAATCACCGCCAACTGCTAGAA
rJMSF013D10+ GAGCAACTTGTTCATAGTATTTCAACTGTATCATCTGAAAATCACCGCCAACTGCTAGAG
rJMSF030I22+ GAGCAACTTGTTCATAGTATTTCAACTGTATCATCTGAAAATCACCGCCAACTGCTAGAA
____________________________________________________________
consensus GAGCAACTTGTTCATAGTATTTCAACTGTATCATCTGAAAATCACCGCCAACTGCTAGAA
. : . : . : . : . : . :
rJMSF049J09+ AACACTGTGCTTTGTGGTGGCACTACTTCAATGACTGGGTTTGAAGATCGATTCCAGAAA
JMFN029M07- AACACTGTGCTTTGTGGTGGCACTACTTCAATGACTGGGTTTGAAGATCGATTCCAGAAA
rJMSF039F01+ AACACTGTGCTTTGTGGTGGCACTACTTCAATGACTGGGTTTGAAGATCGATTCCAGAAA
rJMSF013D10+ AACACTGTGCTTTGTGGTGGCACTACTTCAATGACTGGGTTTGAAGATCGATTCCAGAAA
rJMSF030I22+ AACACTGTGCTTTGTGGTGGCACTACTTCAATGACTGGGTTTGAAGATCGATTCCAGAAA
____________________________________________________________
consensus AACACTGTGCTTTGTGGTGGCACTACTTCAATGACTGGGTTTGAAGATCGATTCCAGAAA
. : . : . : . : . : . :
rJMSF049J09+ GAAGCTAGCCTCTGCTCATCTGCTATCAGCCCTGCTCTAGTGAAGCCTCGGGAGTACATG
JMFN029M07- GAAGCTAGCCTCTGCTCATCTGCTATCAGCCCTGCTCTAGTGAAGCCTCCGGAGTACATG
rJMSF039F01+ GAAGCTAGCCTCTGCTCATCTGCTATCAGCCCTGCTCTAGTGAAGCCTCGGGAGTACATG
rJMSF013D10+ GAAGCTAGCCTCTGCTCATCTGCTATCAGCCCTGCTCTAGTGAAGCCTCCGGAGTACATG
rJMSF030I22+ GAAGCTAGCCTCTGCTCATCTGCTATCAGCCCTGCTCTAGTGAAGCCTCCGGAGTACATG
____________________________________________________________
consensus GAAGCTAGCCTCTGCTCATCTGCTATCAGCCCTGCTCTAGTGAAGCCTCCGGAGTACATG
. : . : . : . : . : . :
rJMSF049J09+ CCAGAGAACTTGGTTATGTATTCGGCATGGGTTGGTGGCGCCATACTTGCAAAAGTTGTG
JMFN029M07- CCAGAGAACTTGGTTATGTATTCGGCATGGGTTGGTGGCGCCATACTTGCAAAAGTTGTG
rJMSF039F01+ CCAGAGAACTTGGTTATGTATTCGGCATGGGTTGGTGGCGCCATACTTGCAAAAGTTGTG
rJMSF013D10+ CCAGAGAACTTGGTTATGTATTCGGCATGGGTTGGTGGCGCCATACTTGCAAAAGTTGTG
rJMSF030I22+ CCAGAGAACTTGGTTATGTATTCGGCATGGGTTGGTGGCGCCATACTTGCAAAAGTTGTG
____________________________________________________________
consensus CCAGAGAACTTGGTTATGTATTCGGCATGGGTTGGTGGCGCCATACTTGCAAAAGTTGTG
. : . : . : . : . : . :
rJMSF049J09+ TTCCCTCAAAACCAACACATAACCAAGGCAGACTATGATGAAAGCGGACCTTCCATTGTT
JMFN029M07- TTCCCTCAAAACCAACACATAACCAAGGCAGACTATGATGAAAGCGGACCTTCCATTGTT
rJMSF039F01+ TTCCCTCAAAACCAACACATAACCAAGGCAGACTATGATGAAAGCGGACCTTCCATTGTT
rJMSF013D10+ TTCCCTCAAAACCAACACATAACCAAGGCAGACTATGATGAAAGCGGACCTTCCATTGTT
rJMSF030I22+ TTCCCTCAAAACCAACACATAACCAAGGCAGACTATGATGAAAGCGGACCTTCCATTGTT
____________________________________________________________
consensus TTCCCTCAAAACCAACACATAACCAAGGCAGACTATGATGAAAGCGGACCTTCCATTGTT
. : . : . : . : . : . :
rJMSF049J09+ CACAAAAAATGTTTTTAGGGAATATCACATTAGCATCTGCTTGTTCGATCGCTTCATTCG
JMFN029M07- CACAAAAAATGTTTTTAGGGAATATCACATTAGCATCTGCTTGTTCGATCGCTTCATTCG
rJMSF039F01+ CACAAAAAATGTTTTTAGGGAATATCACATTAGCATCTGCTTGTTCGATCGCTTCATTCG
rJMSF013D10+ CACAAAAAATGTTTTTAGGGAATATCACATTAGCATCTGCTTGTTCGATCGCTTCATTCG
rJMSF030I22+ CACAAAAAATGTTTTTAGGGAATATCACATTAGCATCTGCTTGTTCGATCGCTTCATTCG
____________________________________________________________
consensus CACAAAAAATGTTTTTAGGGAATATCACATTAGCATCTGCTTGTTCGATCGCTTCATTCG
. : . : . : . : . : . :
rJMSF049J09+ TATATTATAATCTAACATGTATTATATAGTTGGTTGTTGTATTGTCGCTAGAACAGATAA
JMFN029M07- TATATTATAATCTAACATGTATTATATAGTTGGTTGTTGTATTGTCGCTAGAACAGATAA
rJMSF039F01+ TATATTATAATCTAACATGTATTATATAGTTGGTTGTTGTATTGTCGCTAGAACAGATAA
rJMSF013D10+ TATATTATAATCTAACATGTATTATATAGTTGGTTGTTGTATTGTCGCTAGAACAGATAA
rJMSF030I22+ TATATTATAATCTAACATGTATTATATAGTTGGTTGTTGTATTGTCGCTAGAACAGATAA
____________________________________________________________
consensus TATATTATAATCTAACATGTATTATATAGTTGGTTGTTGTATTGTCGCTAGAACAGATAA
. : . : . : . : . : . :
rJMSF049J09+ TTTGTTTTCGATCTTGTTATGTTCCTAGGT
JMFN029M07- TTTGTTTTCGATCTTGTTATG
rJMSF039F01+ TTTGTTTTCGATCTTGTTATGTTCCTAGGT
rJMSF013D10+ TTTGTTTTCGATCTTGTTATGTTCCTAGGTTGCAGCAATACTAATATCTAAATGTTACGT
rJMSF030I22+ TTTGTTTTCGATCTTGTTATGTTCCTAGGTTGCAGCAATACTAATATCTAAATGTTACGT
____________________________________________________________
consensus TTTGTTTTCGATCTTGTTATGTTCCTAGGTTGCAGCAATACTAATATCTAAATGTTACGT
. : . : . : . : . : . :
rJMSF013D10+ AGTACTAGTTGGTATGGAAGCTAACCAGCCGATACTGAAACTTTTTGCATGATTT
rJMSF030I22+ AGTACTAGTTGGTATGGAAGCTAA-CAGCCGATACTGAAACTTTTTGCATGATTTATGCT
____________________________________________________________
consensus AGTACTAGTTGGTATGGAAGCTAACCAGCCGATACTGAAACTTTTTGCATGATTTATGCT